Wall clock time and date at job start Tue Mar 31 2020 03:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46772 * 124.34578 * 2 1 4 4 C 1.54471 * 105.47124 * 162.98302 * 3 2 1 5 5 C 1.54631 * 101.76736 * 25.41813 * 4 3 2 6 6 H 1.09004 * 110.48668 * 94.00953 * 5 4 3 7 7 C 1.50699 * 110.48780 * 216.52099 * 5 4 3 8 8 O 1.21285 * 120.00151 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00270 * 179.97438 * 7 5 4 10 10 C 1.46926 * 120.63420 * 180.02562 * 9 7 5 11 11 C 1.53197 * 108.77179 * 233.58711 * 10 9 7 12 12 C 1.53037 * 109.31584 * 305.36300 * 11 10 9 13 13 N 1.46498 * 109.46022 * 181.38483 * 12 11 10 14 14 C 1.36943 * 119.99752 * 154.72336 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.53042 * 109.53705 * 61.36870 * 12 11 10 23 23 C 1.46932 * 120.62703 * 359.97438 * 9 7 5 24 24 C 1.34415 * 124.35355 * 180.02562 * 2 1 3 25 25 O 1.21279 * 124.94098 * 0.43901 * 24 2 1 26 26 H 1.09002 * 109.46850 * 89.99801 * 1 2 3 27 27 H 1.08999 * 109.47025 * 209.99623 * 1 2 3 28 28 H 1.09000 * 109.47223 * 329.99626 * 1 2 3 29 29 H 1.09000 * 110.24042 * 43.98880 * 3 2 1 30 30 H 1.08995 * 110.32170 * 282.02395 * 3 2 1 31 31 H 1.09006 * 110.97327 * 267.29763 * 4 3 2 32 32 H 1.08997 * 111.00180 * 143.55197 * 4 3 2 33 33 H 1.08996 * 109.58577 * 113.80266 * 10 9 7 34 34 H 1.08995 * 109.58659 * 353.36898 * 10 9 7 35 35 H 1.08998 * 109.49241 * 185.41155 * 11 10 9 36 36 H 1.08999 * 109.49895 * 65.31886 * 11 10 9 37 37 H 1.09005 * 109.45755 * 301.36220 * 12 11 10 38 38 H 0.97001 * 120.00384 * 335.00692 * 13 12 11 39 39 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 40 40 H 1.08992 * 109.49989 * 58.58560 * 22 12 11 41 41 H 1.09002 * 109.49637 * 178.68355 * 22 12 11 42 42 H 1.09004 * 109.58497 * 246.19508 * 23 9 7 43 43 H 1.09002 * 109.58604 * 6.61995 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7009 0.7489 0.4357 5 6 3.6898 -0.7376 0.0101 6 1 4.1216 -0.8530 -0.9841 7 6 4.4404 -1.5784 1.0105 8 8 4.9456 -1.0578 1.9825 9 7 4.5495 -2.9089 0.8257 10 6 5.2776 -3.7418 1.7925 11 6 6.3370 -4.5557 1.0427 12 6 5.6660 -5.3429 -0.0852 13 7 6.6712 -6.1479 -0.7835 14 6 6.2964 -7.2849 -1.4486 15 1 5.2592 -7.5855 -1.4620 16 6 7.2496 -8.0508 -2.1055 17 7 6.8894 -9.1432 -2.7451 18 14 9.0437 -7.5311 -2.0816 19 1 9.7207 -8.1424 -0.9097 20 1 9.7075 -7.9863 -3.3296 21 1 9.1294 -6.0516 -1.9867 22 6 5.0165 -4.3701 -1.0721 23 6 3.9415 -3.5542 -0.3460 24 6 2.2235 -1.1097 -0.0005 25 8 1.7947 -2.2441 -0.0086 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.8983 1.9383 0.7103 30 1 2.3308 1.6445 -0.9997 31 1 3.8268 0.8449 1.5142 32 1 4.4757 1.3011 -0.0961 33 1 4.5818 -4.4177 2.2895 34 1 5.7623 -3.1044 2.5319 35 1 6.8193 -5.2481 1.7326 36 1 7.0832 -3.8817 0.6220 37 1 4.9026 -5.9985 0.3339 38 1 7.6028 -5.8780 -0.7714 39 1 7.5554 -9.6783 -3.2045 40 1 5.7750 -3.6978 -1.4729 41 1 4.5589 -4.9305 -1.8874 42 1 3.1370 -4.2149 -0.0228 43 1 3.5445 -2.7929 -1.0175 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996912367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:17 Heat of formation + Delta-G solvation = -67.504939 kcal Electronic energy + Delta-G solvation = -24743.027202 eV Core-core repulsion = 21208.780707 eV Total energy + Delta-G solvation = -3534.246495 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.23750 -40.44648 -38.87732 -37.53143 -36.22145 -34.18853 -33.72894 -32.08547 -31.54900 -29.04665 -27.73908 -26.55084 -24.42411 -24.28408 -22.98576 -21.82355 -21.07937 -20.00557 -19.39953 -18.53440 -17.92488 -17.60108 -16.87833 -16.71196 -16.18394 -15.90132 -15.76416 -15.16046 -15.08869 -14.88887 -14.75906 -14.47945 -14.29657 -14.09122 -13.84920 -13.58770 -13.40838 -13.20853 -13.04550 -12.92495 -12.67229 -12.64453 -12.20478 -12.14153 -12.01354 -11.96526 -11.79812 -11.37036 -11.12488 -10.90400 -10.83343 -9.73789 -9.71704 -9.31402 -8.01735 -5.35492 1.18899 1.38135 1.41364 1.48568 1.50754 1.93423 2.12870 2.48859 3.19368 3.21446 3.29329 3.49680 3.62251 3.86082 3.95141 4.04226 4.10272 4.15416 4.31755 4.36706 4.37618 4.41215 4.58591 4.64793 4.67915 4.73616 4.78588 4.86366 4.87890 4.98880 5.00038 5.04585 5.16124 5.23599 5.42281 5.50989 5.56466 5.77592 5.97347 6.22145 6.32308 6.98730 7.01311 7.07945 7.83479 8.03709 9.19910 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026998 B = 0.003618 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.850057 B = 7738.234960 C = 8177.550531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.619 5.619 3 C 0.102 3.898 4 C -0.111 4.111 5 C -0.150 4.150 6 H 0.152 0.848 7 C 0.528 3.472 8 O -0.569 6.569 9 N -0.598 5.598 10 C 0.119 3.881 11 C -0.128 4.128 12 C 0.176 3.824 13 N -0.750 5.750 14 C -0.228 4.228 15 H 0.056 0.944 16 C -0.065 4.065 17 N -0.985 5.985 18 Si 0.956 3.044 19 H -0.279 1.279 20 H -0.297 1.297 21 H -0.252 1.252 22 C -0.144 4.144 23 C 0.138 3.862 24 C 0.513 3.487 25 O -0.552 6.552 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.365 0.635 39 H 0.257 0.743 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 27.422 6.446 29.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.353 5.353 3 C -0.019 4.019 4 C -0.149 4.149 5 C -0.174 4.174 6 H 0.170 0.830 7 C 0.316 3.684 8 O -0.449 6.449 9 N -0.329 5.329 10 C -0.004 4.004 11 C -0.167 4.167 12 C 0.068 3.932 13 N -0.393 5.393 14 C -0.359 4.359 15 H 0.074 0.926 16 C -0.256 4.256 17 N -0.636 5.636 18 Si 0.784 3.216 19 H -0.205 1.205 20 H -0.224 1.224 21 H -0.177 1.177 22 C -0.185 4.185 23 C 0.015 3.985 24 C 0.300 3.700 25 O -0.430 6.430 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.140 0.860 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.198 0.802 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.063 26.941 6.881 29.570 hybrid contribution 0.946 -0.783 -0.434 1.302 sum -9.117 26.158 6.447 28.441 Atomic orbital electron populations 1.21735 0.76431 1.03849 1.02903 1.48310 1.07622 1.07410 1.71944 1.22447 0.88822 0.86337 1.04339 1.22664 0.98365 0.89934 1.03915 1.22231 0.93941 0.98852 1.02390 0.83033 1.20265 0.79868 0.82060 0.86245 1.90649 1.50225 1.72259 1.31804 1.48162 1.52848 1.06784 1.25106 1.21578 0.94063 0.93432 0.91277 1.22094 0.98100 0.98724 0.97769 1.20369 0.90863 0.90819 0.91194 1.42784 1.06196 1.27212 1.63110 1.19020 0.94158 0.99009 1.23739 0.92639 1.25494 1.02497 0.97293 1.00293 1.69886 1.34666 1.18304 1.40708 0.85392 0.80436 0.78911 0.76891 1.20504 1.22360 1.17707 1.22532 0.98391 0.98341 0.99235 1.21728 0.93812 0.96817 0.86103 1.20585 0.88753 0.84848 0.75855 1.90782 1.78704 1.22080 1.51482 0.91389 0.92451 0.87901 0.87608 0.87984 0.89785 0.85994 0.90907 0.88726 0.89818 0.91475 0.94024 0.80170 0.93381 0.91927 0.92422 0.91927 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 10.96 127.77 1.40 2.43 16 2 N -0.62 -9.32 3.33 -842.91 -2.81 -12.13 16 3 C 0.10 0.78 7.35 86.83 0.64 1.42 16 4 C -0.11 -1.33 6.48 31.65 0.21 -1.13 16 5 C -0.15 -2.88 2.39 -11.55 -0.03 -2.91 16 6 H 0.15 2.34 7.59 -2.38 -0.02 2.33 16 7 C 0.53 14.33 7.06 87.66 0.62 14.95 16 8 O -0.57 -17.89 14.90 -3.05 -0.05 -17.93 16 9 N -0.60 -17.20 2.96 -818.78 -2.42 -19.63 16 10 C 0.12 3.38 6.43 86.36 0.56 3.93 16 11 C -0.13 -3.94 5.55 30.67 0.17 -3.77 16 12 C 0.18 6.71 2.73 45.02 0.12 6.83 16 13 N -0.75 -35.11 4.92 -322.81 -1.59 -36.70 16 14 C -0.23 -13.10 10.41 84.03 0.87 -12.22 16 15 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 16 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 17 N -0.98 -63.76 13.97 21.65 0.30 -63.45 16 18 Si 0.96 45.83 27.74 68.60 1.90 47.74 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 20 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 21 H -0.25 -10.92 6.52 99.48 0.65 -10.27 16 22 C -0.14 -4.98 5.66 30.69 0.17 -4.80 16 23 C 0.14 4.12 4.49 86.38 0.39 4.51 16 24 C 0.51 11.51 6.98 87.90 0.61 12.12 16 25 O -0.55 -16.62 13.90 -3.03 -0.04 -16.66 16 26 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.89 7.93 -2.39 -0.02 0.87 16 28 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.08 1.36 7.00 -2.38 -0.02 1.34 16 32 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.09 2.62 7.01 -2.39 -0.02 2.61 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.04 1.72 8.08 -2.38 -0.02 1.70 16 38 H 0.37 16.38 5.66 -92.71 -0.52 15.85 16 39 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 2.06 7.71 -2.39 -0.02 2.04 16 43 H 0.09 2.52 4.71 -2.39 -0.01 2.51 16 Total: -1.00 -77.81 337.92 1.93 -75.88 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.43 Total: 24.88 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 6.20 Total: 18.00 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -6.52 Total: -131.91 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.09 Total: -34.59 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.90 Total: 47.74 kcal Total: -77.81 1.93 -75.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996912367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.377 kcal (2) G-P(sol) polarization free energy of solvation -77.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds