Wall clock time and date at job start Tue Mar 31 2020 03:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 120.00129 * 2 1 4 4 O 1.21281 * 119.99810 * 4.33748 * 3 2 1 5 5 C 1.50694 * 120.00006 * 184.33460 * 3 2 1 6 6 H 1.09001 * 110.85864 * 309.70217 * 5 3 2 7 7 C 1.54633 * 110.96754 * 73.49459 * 5 3 2 8 8 C 1.51274 * 104.19598 * 93.32059 * 7 5 3 9 9 O 1.21287 * 124.94291 * 196.23003 * 8 7 5 10 10 N 1.34419 * 110.11770 * 16.25176 * 8 7 5 11 11 C 1.46500 * 124.34819 * 180.40780 * 10 8 7 12 12 C 1.46756 * 111.30078 * 0.67506 * 10 8 7 13 13 C 1.46503 * 119.99799 * 180.02562 * 2 1 3 14 14 C 1.53781 * 113.61463 * 37.49540 * 13 2 1 15 15 C 1.53778 * 87.08066 * 220.01602 * 14 13 2 16 16 N 1.46499 * 113.61109 * 139.97763 * 15 14 13 17 17 C 1.36938 * 119.99696 * 107.50527 * 16 15 14 18 18 H 1.08000 * 119.99947 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00173 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99832 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00228 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47052 * 60.00255 * 21 19 17 23 23 H 1.48501 * 109.47107 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47016 * 300.00486 * 21 19 17 25 25 C 1.53775 * 113.61454 * 299.99823 * 13 2 1 26 26 H 1.09000 * 109.46800 * 65.36262 * 1 2 3 27 27 H 1.08994 * 109.46939 * 185.36971 * 1 2 3 28 28 H 1.08998 * 109.46657 * 305.37037 * 1 2 3 29 29 H 1.08995 * 110.48808 * 334.63922 * 7 5 3 30 30 H 1.09005 * 110.48414 * 211.99591 * 7 5 3 31 31 H 1.09000 * 109.47694 * 0.02562 * 11 10 8 32 32 H 1.09000 * 109.47024 * 240.02067 * 11 10 8 33 33 H 1.09003 * 109.46707 * 120.02726 * 11 10 8 34 34 H 1.08996 * 110.25303 * 101.71413 * 12 10 8 35 35 H 1.08999 * 110.25036 * 223.72289 * 12 10 8 36 36 H 1.08996 * 112.84893 * 168.80083 * 13 2 1 37 37 H 1.09000 * 113.61473 * 334.57077 * 14 13 2 38 38 H 1.08999 * 113.61464 * 105.47166 * 14 13 2 39 39 H 1.08996 * 113.69312 * 270.87429 * 15 14 13 40 40 H 0.97000 * 120.00610 * 287.50316 * 16 15 14 41 41 H 0.97002 * 119.99550 * 179.97438 * 20 19 17 42 42 H 1.09002 * 113.61890 * 254.53169 * 25 13 2 43 43 H 1.09002 * 113.61826 * 25.42872 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5351 2.2160 0.0794 5 6 3.6427 1.1690 -0.0986 6 1 4.0804 0.4897 0.6328 7 6 4.1037 0.8121 -1.5308 8 6 4.2699 2.1526 -2.2120 9 8 4.3482 2.3175 -3.4110 10 7 4.3186 3.1342 -1.2950 11 6 4.4655 4.5565 -1.6138 12 6 4.2121 2.5975 0.0667 13 6 2.1975 -1.2688 -0.0006 14 6 1.5373 -2.3608 -0.8587 15 6 1.9129 -3.3527 0.2548 16 7 0.8716 -4.3450 0.5325 17 6 1.0454 -5.6467 0.1445 18 1 1.9503 -5.9418 -0.3658 19 6 0.0590 -6.5872 0.4081 20 7 -1.0437 -6.2276 1.0305 21 14 0.2964 -8.3630 -0.1205 22 1 1.5061 -8.9179 0.5379 23 1 -0.8926 -9.1602 0.2746 24 1 0.4640 -8.4224 -1.5949 25 6 1.8954 -2.1550 1.2193 26 1 -0.3633 0.4284 -0.9341 27 1 -0.3633 -1.0231 0.0962 28 1 -0.3632 0.5949 0.8380 29 1 3.3445 0.2175 -2.0389 30 1 5.0533 0.2776 -1.5038 31 1 4.5268 4.6823 -2.6948 32 1 5.3747 4.9405 -1.1512 33 1 3.6043 5.1051 -1.2324 34 1 5.1951 2.5625 0.5364 35 1 3.5311 3.2072 0.6604 36 1 3.2624 -1.1426 -0.1956 37 1 0.4623 -2.2291 -0.9819 38 1 2.0527 -2.5467 -1.8010 39 1 2.8998 -3.7982 0.1299 40 1 0.0590 -4.0800 0.9912 41 1 -1.7331 -6.8847 1.2144 42 1 2.6997 -2.1748 1.9546 43 1 0.9183 -1.9670 1.6644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998859266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:24 Heat of formation + Delta-G solvation = -23.054154 kcal Electronic energy + Delta-G solvation = -24313.792303 eV Core-core repulsion = 20781.473339 eV Total energy + Delta-G solvation = -3532.318964 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21781 -39.68398 -38.25657 -36.39281 -34.69731 -33.23780 -32.94223 -29.99618 -28.30743 -27.79034 -26.42268 -25.28697 -24.67142 -23.16958 -22.24607 -19.90131 -19.53099 -18.77604 -17.82121 -17.16997 -16.90502 -16.14145 -15.96042 -15.58756 -15.32878 -14.73432 -14.64855 -14.04307 -13.93955 -13.76647 -13.34964 -13.13303 -12.96209 -12.76113 -12.52766 -12.33263 -12.28473 -12.20144 -11.96196 -11.82036 -11.65129 -11.37571 -10.96270 -10.70668 -10.55027 -10.37600 -10.14548 -10.04599 -9.88243 -9.59601 -8.97239 -8.96490 -8.56105 -7.07443 -5.86826 -3.16580 2.36176 2.45245 2.78353 2.92911 3.38481 3.43543 3.44215 3.97257 4.07555 4.20246 4.51969 4.53572 4.84715 4.91787 4.97192 5.03100 5.04544 5.07312 5.24361 5.26984 5.35762 5.37798 5.46174 5.50514 5.51880 5.63397 5.73534 5.81981 5.86818 5.95099 6.17186 6.18558 6.22355 6.27467 6.43874 6.67262 6.84300 6.85919 7.41323 7.61169 7.94385 8.06464 8.31219 9.42736 9.98345 10.32226 11.35211 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.003104 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.995478 B = 9019.527945 C = 9442.191779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.593 5.593 3 C 0.518 3.482 4 O -0.540 6.540 5 C -0.127 4.127 6 H 0.125 0.875 7 C -0.146 4.146 8 C 0.519 3.481 9 O -0.533 6.533 10 N -0.618 5.618 11 C 0.095 3.905 12 C 0.119 3.881 13 C 0.101 3.899 14 C -0.177 4.177 15 C 0.170 3.830 16 N -0.709 5.709 17 C -0.248 4.248 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.163 4.163 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.385 0.615 41 H 0.257 0.743 42 H 0.066 0.934 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.496 17.381 0.160 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.323 5.323 3 C 0.305 3.695 4 O -0.418 6.418 5 C -0.149 4.149 6 H 0.143 0.857 7 C -0.186 4.186 8 C 0.306 3.694 9 O -0.410 6.410 10 N -0.352 5.352 11 C -0.047 4.047 12 C -0.004 4.004 13 C -0.003 4.003 14 C -0.219 4.219 15 C 0.056 3.944 16 N -0.347 5.347 17 C -0.379 4.379 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.204 4.204 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.220 17.895 -0.492 21.127 hybrid contribution -0.282 -0.962 -0.015 1.003 sum 10.938 16.932 -0.507 20.164 Atomic orbital electron populations 1.21643 0.78832 1.03384 1.01795 1.47834 1.07125 1.05710 1.71667 1.20166 0.89142 0.83607 0.76549 1.90688 1.70005 1.31244 1.49867 1.22360 0.94046 0.99099 0.99362 0.85682 1.22396 1.05216 0.96884 0.94103 1.20793 0.75231 0.87081 0.86267 1.90729 1.50847 1.85496 1.13943 1.48047 1.72645 1.07100 1.07437 1.21549 1.01314 0.79230 1.02592 1.22013 1.01256 0.93104 0.84059 1.22856 0.96391 0.81273 0.99742 1.24400 1.01469 0.96307 0.99728 1.21353 0.93866 0.87328 0.91806 1.42351 1.18464 1.05258 1.68617 1.19245 1.02162 0.85189 1.31339 0.91007 1.24777 0.96608 0.98342 1.00949 1.69647 1.08184 1.33904 1.46171 0.86259 0.76896 0.84687 0.78276 1.21167 1.21666 1.21159 1.23975 1.02284 0.97165 0.96933 0.92533 0.89431 0.91977 0.87211 0.86348 0.90021 0.92058 0.91829 0.90102 0.88725 0.87237 0.89510 0.91838 0.90148 0.78045 0.93307 0.91555 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.10 9.16 59.85 0.55 1.65 16 2 N -0.59 -7.37 3.08 -173.01 -0.53 -7.90 16 3 C 0.52 6.50 6.90 -10.99 -0.08 6.43 16 4 O -0.54 -8.52 15.60 5.56 0.09 -8.43 16 5 C -0.13 -1.11 2.47 -90.04 -0.22 -1.33 16 6 H 0.13 0.75 7.36 -51.93 -0.38 0.37 16 7 C -0.15 -1.36 5.41 -26.74 -0.14 -1.51 16 8 C 0.52 6.56 8.02 -10.86 -0.09 6.47 16 9 O -0.53 -8.82 17.35 5.55 0.10 -8.73 16 10 N -0.62 -6.46 3.33 -180.18 -0.60 -7.06 16 11 C 0.09 0.81 11.14 59.85 0.67 1.47 16 12 C 0.12 0.98 6.65 -3.03 -0.02 0.96 16 13 C 0.10 1.19 3.55 -67.12 -0.24 0.95 16 14 C -0.18 -2.61 7.25 -25.92 -0.19 -2.80 16 15 C 0.17 2.90 4.48 -67.12 -0.30 2.60 16 16 N -0.71 -16.34 5.40 -52.64 -0.28 -16.62 16 17 C -0.25 -6.49 9.97 -15.06 -0.15 -6.64 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 21 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 C -0.16 -2.25 7.35 -25.92 -0.19 -2.44 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.14 5.70 -51.93 -0.30 0.85 16 28 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 29 H 0.11 1.14 7.45 -51.93 -0.39 0.76 16 30 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.78 7.53 -51.93 -0.39 0.39 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.86 7.14 -51.93 -0.37 0.49 16 36 H 0.11 1.00 5.45 -51.93 -0.28 0.72 16 37 H 0.09 1.41 6.15 -51.93 -0.32 1.09 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.34 8.10 -51.93 -0.42 0.91 16 40 H 0.39 9.51 7.92 -40.82 -0.32 9.18 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.26 7.36 -51.93 -0.38 0.88 16 LS Contribution 347.93 15.07 5.24 5.24 Total: -1.00 -33.77 347.93 -7.27 -41.04 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.48 Total: 6.81 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -0.50 Total: 5.43 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.69 Total: -57.89 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.18 Total: -17.16 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.77 -7.27 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998859266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.984 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds