Wall clock time and date at job start Tue Mar 31 2020 03:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 120.00129 * 2 1 4 4 O 1.21281 * 119.99810 * 4.33748 * 3 2 1 5 5 C 1.50694 * 120.00006 * 184.33460 * 3 2 1 6 6 H 1.09001 * 110.85864 * 309.70217 * 5 3 2 7 7 C 1.54633 * 110.96754 * 73.49459 * 5 3 2 8 8 C 1.51274 * 104.19598 * 93.32059 * 7 5 3 9 9 O 1.21287 * 124.94291 * 196.23003 * 8 7 5 10 10 N 1.34419 * 110.11770 * 16.25176 * 8 7 5 11 11 C 1.46500 * 124.34819 * 180.40780 * 10 8 7 12 12 C 1.46756 * 111.30078 * 0.67506 * 10 8 7 13 13 C 1.46503 * 119.99799 * 180.02562 * 2 1 3 14 14 C 1.53781 * 113.61463 * 37.49540 * 13 2 1 15 15 C 1.53778 * 87.08066 * 220.01602 * 14 13 2 16 16 N 1.46499 * 113.61109 * 139.97763 * 15 14 13 17 17 C 1.36938 * 119.99696 * 107.50527 * 16 15 14 18 18 H 1.08000 * 119.99947 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00173 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99832 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00228 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47052 * 60.00255 * 21 19 17 23 23 H 1.48501 * 109.47107 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47016 * 300.00486 * 21 19 17 25 25 C 1.53775 * 113.61454 * 299.99823 * 13 2 1 26 26 H 1.09000 * 109.46800 * 65.36262 * 1 2 3 27 27 H 1.08994 * 109.46939 * 185.36971 * 1 2 3 28 28 H 1.08998 * 109.46657 * 305.37037 * 1 2 3 29 29 H 1.08995 * 110.48808 * 334.63922 * 7 5 3 30 30 H 1.09005 * 110.48414 * 211.99591 * 7 5 3 31 31 H 1.09000 * 109.47694 * 0.02562 * 11 10 8 32 32 H 1.09000 * 109.47024 * 240.02067 * 11 10 8 33 33 H 1.09003 * 109.46707 * 120.02726 * 11 10 8 34 34 H 1.08996 * 110.25303 * 101.71413 * 12 10 8 35 35 H 1.08999 * 110.25036 * 223.72289 * 12 10 8 36 36 H 1.08996 * 112.84893 * 168.80083 * 13 2 1 37 37 H 1.09000 * 113.61473 * 334.57077 * 14 13 2 38 38 H 1.08999 * 113.61464 * 105.47166 * 14 13 2 39 39 H 1.08996 * 113.69312 * 270.87429 * 15 14 13 40 40 H 0.97000 * 120.00610 * 287.50316 * 16 15 14 41 41 H 0.97002 * 119.99550 * 179.97438 * 20 19 17 42 42 H 1.09002 * 113.61890 * 254.53169 * 25 13 2 43 43 H 1.09002 * 113.61826 * 25.42872 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5351 2.2160 0.0794 5 6 3.6427 1.1690 -0.0986 6 1 4.0804 0.4897 0.6328 7 6 4.1037 0.8121 -1.5308 8 6 4.2699 2.1526 -2.2120 9 8 4.3482 2.3175 -3.4110 10 7 4.3186 3.1342 -1.2950 11 6 4.4655 4.5565 -1.6138 12 6 4.2121 2.5975 0.0667 13 6 2.1975 -1.2688 -0.0006 14 6 1.5373 -2.3608 -0.8587 15 6 1.9129 -3.3527 0.2548 16 7 0.8716 -4.3450 0.5325 17 6 1.0454 -5.6467 0.1445 18 1 1.9503 -5.9418 -0.3658 19 6 0.0590 -6.5872 0.4081 20 7 -1.0437 -6.2276 1.0305 21 14 0.2964 -8.3630 -0.1205 22 1 1.5061 -8.9179 0.5379 23 1 -0.8926 -9.1602 0.2746 24 1 0.4640 -8.4224 -1.5949 25 6 1.8954 -2.1550 1.2193 26 1 -0.3633 0.4284 -0.9341 27 1 -0.3633 -1.0231 0.0962 28 1 -0.3632 0.5949 0.8380 29 1 3.3445 0.2175 -2.0389 30 1 5.0533 0.2776 -1.5038 31 1 4.5268 4.6823 -2.6948 32 1 5.3747 4.9405 -1.1512 33 1 3.6043 5.1051 -1.2324 34 1 5.1951 2.5625 0.5364 35 1 3.5311 3.2072 0.6604 36 1 3.2624 -1.1426 -0.1956 37 1 0.4623 -2.2291 -0.9819 38 1 2.0527 -2.5467 -1.8010 39 1 2.8998 -3.7982 0.1299 40 1 0.0590 -4.0800 0.9912 41 1 -1.7331 -6.8847 1.2144 42 1 2.6997 -2.1748 1.9546 43 1 0.9183 -1.9670 1.6644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998859266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:22 Heat of formation + Delta-G solvation = -47.150652 kcal Electronic energy + Delta-G solvation = -24314.837206 eV Core-core repulsion = 20781.473339 eV Total energy + Delta-G solvation = -3533.363867 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.10528 -40.70699 -39.40801 -37.33234 -36.11666 -34.59655 -33.94132 -31.79700 -29.22227 -28.53652 -27.27355 -26.57053 -26.20370 -24.39224 -23.31731 -20.76837 -20.71665 -19.85963 -19.00087 -18.71310 -17.77763 -17.10722 -16.99582 -16.58816 -16.32376 -16.19693 -15.93917 -15.36320 -14.95441 -14.70429 -14.58434 -14.40170 -14.15011 -13.53360 -13.47556 -13.37615 -13.24448 -13.14423 -13.09235 -12.94657 -12.76197 -12.72734 -12.44195 -12.28057 -12.10301 -11.87238 -11.57103 -11.45568 -10.98597 -10.82145 -10.75792 -9.74049 -9.63623 -8.94233 -7.91681 -5.19112 1.45190 1.50905 1.51525 1.52888 1.58453 1.94164 2.09696 2.59926 3.23714 3.34816 3.38109 3.40965 3.76696 3.79202 3.86400 4.00389 4.23752 4.34388 4.35686 4.37762 4.41397 4.47914 4.56060 4.65124 4.68521 4.72561 4.79256 4.81903 4.83327 4.86702 4.96175 4.99937 5.15715 5.25213 5.48955 5.50812 5.56441 5.63586 6.05922 6.30736 6.42732 7.07139 7.08848 7.37290 8.15620 8.35700 9.31467 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.003104 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.995478 B = 9019.527945 C = 9442.191779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.594 5.594 3 C 0.513 3.487 4 O -0.578 6.578 5 C -0.119 4.119 6 H 0.169 0.831 7 C -0.139 4.139 8 C 0.502 3.498 9 O -0.587 6.587 10 N -0.620 5.620 11 C 0.089 3.911 12 C 0.118 3.882 13 C 0.126 3.874 14 C -0.175 4.175 15 C 0.150 3.850 16 N -0.726 5.726 17 C -0.239 4.239 18 H 0.082 0.918 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.968 3.032 22 H -0.276 1.276 23 H -0.301 1.301 24 H -0.280 1.280 25 C -0.153 4.153 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.157 0.843 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.151 0.849 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.091 0.909 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.538 17.694 0.869 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.324 5.324 3 C 0.302 3.698 4 O -0.458 6.458 5 C -0.140 4.140 6 H 0.187 0.813 7 C -0.179 4.179 8 C 0.291 3.709 9 O -0.469 6.469 10 N -0.353 5.353 11 C -0.052 4.052 12 C -0.004 4.004 13 C 0.023 3.977 14 C -0.217 4.217 15 C 0.040 3.960 16 N -0.364 5.364 17 C -0.371 4.371 18 H 0.100 0.900 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.798 3.202 22 H -0.202 1.202 23 H -0.228 1.228 24 H -0.206 1.206 25 C -0.193 4.193 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.174 0.826 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.141 0.859 35 H 0.103 0.897 36 H 0.169 0.831 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.110 0.890 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.324 18.249 0.235 23.201 hybrid contribution -1.214 -0.923 -0.237 1.544 sum 13.110 17.326 -0.002 21.727 Atomic orbital electron populations 1.21550 0.79815 1.02798 1.01419 1.47892 1.06810 1.06219 1.71501 1.20928 0.90930 0.82692 0.75239 1.90680 1.71256 1.32461 1.51359 1.22491 0.90813 1.00613 1.00079 0.81346 1.22449 1.06789 0.95105 0.93524 1.21451 0.74670 0.88848 0.85915 1.90695 1.53513 1.86475 1.16176 1.48304 1.71235 1.07502 1.08248 1.21670 1.02874 0.78780 1.01877 1.22256 1.03207 0.92305 0.82680 1.22805 0.97881 0.80032 0.97012 1.24212 1.00740 0.96904 0.99808 1.21775 0.92799 0.87312 0.94151 1.42569 1.19490 1.05498 1.68796 1.19693 1.01716 0.86506 1.29174 0.90046 1.25529 0.96891 1.02103 1.02446 1.69804 1.09162 1.34567 1.48685 0.85283 0.76471 0.80455 0.77999 1.20198 1.22786 1.20602 1.23817 1.02429 0.95493 0.97558 0.93126 0.90102 0.92173 0.88272 0.82552 0.91749 0.89097 0.91640 0.85913 0.89717 0.83125 0.91582 0.90959 0.88979 0.79604 0.94222 0.89050 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.23 9.16 127.77 1.17 3.40 16 2 N -0.59 -13.51 3.08 -819.66 -2.53 -16.04 16 3 C 0.51 11.57 6.90 87.65 0.60 12.17 16 4 O -0.58 -17.55 15.60 -3.03 -0.05 -17.60 16 5 C -0.12 -1.53 2.47 -10.42 -0.03 -1.56 16 6 H 0.17 0.80 7.36 -2.39 -0.02 0.78 16 7 C -0.14 -2.06 5.41 30.59 0.17 -1.89 16 8 C 0.50 11.85 8.02 87.90 0.71 12.56 16 9 O -0.59 -19.46 17.35 -3.05 -0.05 -19.51 16 10 N -0.62 -11.55 3.33 -842.55 -2.81 -14.36 16 11 C 0.09 1.40 11.14 127.77 1.42 2.83 16 12 C 0.12 1.46 6.65 86.90 0.58 2.04 16 13 C 0.13 2.52 3.55 45.52 0.16 2.68 16 14 C -0.18 -4.84 7.25 31.12 0.23 -4.61 16 15 C 0.15 4.82 4.48 45.52 0.20 5.02 16 16 N -0.73 -33.30 5.40 -320.45 -1.73 -35.03 16 17 C -0.24 -12.37 9.97 84.03 0.84 -11.53 16 18 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 19 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 20 N -0.97 -57.73 13.06 21.65 0.28 -57.45 16 21 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 C -0.15 -3.78 7.35 31.12 0.23 -3.55 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 27 H 0.08 2.17 5.70 -2.39 -0.01 2.15 16 28 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 29 H 0.10 1.75 7.45 -2.39 -0.02 1.73 16 30 H 0.16 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.06 1.23 7.53 -2.39 -0.02 1.21 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 1.29 7.14 -2.39 -0.02 1.28 16 36 H 0.15 1.85 5.45 -2.39 -0.01 1.83 16 37 H 0.07 2.13 6.15 -2.39 -0.01 2.12 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.09 2.75 8.10 -2.39 -0.02 2.74 16 40 H 0.37 18.74 7.92 -92.71 -0.73 18.01 16 41 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.07 1.93 7.36 -2.39 -0.02 1.91 16 Total: -1.00 -77.01 347.93 2.18 -74.84 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.29 Total: 24.90 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 6.74 Total: 13.73 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -6.78 Total: -122.88 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -0.10 Total: -37.11 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -77.01 2.18 -74.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998859266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.687 kcal (2) G-P(sol) polarization free energy of solvation -77.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds