Wall clock time and date at job start Tue Mar 31 2020 03:23:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.46767 * 124.34677 * 2 1
4 4 C 1.54479 * 105.46720 * 196.99443 * 3 2 1
5 5 C 1.54627 * 101.76935 * 334.58383 * 4 3 2
6 6 H 1.09002 * 110.59615 * 143.52979 * 5 4 3
7 7 C 1.50702 * 110.48658 * 266.12005 * 5 4 3
8 8 O 1.21285 * 119.99736 * 90.41613 * 7 5 4
9 9 N 1.34774 * 119.99904 * 270.41345 * 7 5 4
10 10 C 1.46922 * 120.63244 * 355.52094 * 9 7 5
11 11 C 1.53195 * 108.76599 * 126.36040 * 10 9 7
12 12 C 1.53045 * 109.30793 * 54.65591 * 11 10 9
13 13 C 1.53037 * 109.52963 * 298.61423 * 12 11 10
14 14 H 1.08997 * 109.49830 * 301.42158 * 13 12 11
15 15 N 1.46500 * 109.49681 * 181.32566 * 13 12 11
16 16 C 1.36933 * 120.00046 * 85.00132 * 15 13 12
17 17 H 1.07997 * 120.00331 * 359.97438 * 16 15 13
18 18 C 1.38812 * 119.99665 * 179.97438 * 16 15 13
19 19 N 1.31611 * 120.00556 * 359.97438 * 18 16 15
20 20 Si 1.86807 * 119.99610 * 179.97438 * 18 16 15
21 21 H 1.48497 * 109.46905 * 60.00423 * 20 18 16
22 22 H 1.48501 * 109.46856 * 179.97438 * 20 18 16
23 23 H 1.48499 * 109.47261 * 299.99830 * 20 18 16
24 24 C 1.46924 * 120.62953 * 175.50402 * 9 7 5
25 25 C 1.34417 * 124.34896 * 179.97438 * 2 1 3
26 26 O 1.21278 * 124.94160 * 359.57624 * 25 2 1
27 27 H 1.08995 * 109.46931 * 180.02562 * 1 2 3
28 28 H 1.09000 * 109.46856 * 299.99880 * 1 2 3
29 29 H 1.08998 * 109.47128 * 60.00009 * 1 2 3
30 30 H 1.08993 * 110.24531 * 315.99548 * 3 2 1
31 31 H 1.08996 * 110.24206 * 77.90927 * 3 2 1
32 32 H 1.09003 * 110.97057 * 216.46391 * 4 3 2
33 33 H 1.09005 * 110.96933 * 92.70756 * 4 3 2
34 34 H 1.09003 * 109.59089 * 246.15672 * 10 9 7
35 35 H 1.09004 * 109.59028 * 6.58382 * 10 9 7
36 36 H 1.08995 * 109.51023 * 294.70165 * 11 10 9
37 37 H 1.08997 * 109.48946 * 174.59921 * 11 10 9
38 38 H 1.09006 * 109.45399 * 178.59949 * 12 11 10
39 39 H 1.08996 * 109.45842 * 58.63409 * 12 11 10
40 40 H 0.97002 * 119.99849 * 264.99661 * 15 13 12
41 41 H 0.96997 * 120.00469 * 179.97438 * 19 18 16
42 42 H 1.08990 * 109.59076 * 113.84347 * 24 9 7
43 43 H 1.08999 * 109.58773 * 353.41225 * 24 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2931 1.2118 0.0000
4 6 3.7011 0.7486 -0.4352
5 6 3.6898 -0.7378 -0.0093
6 1 4.2333 -1.3477 -0.7310
7 6 4.2835 -0.8968 1.3668
8 8 3.5695 -0.8391 2.3455
9 7 5.6076 -1.1030 1.5097
10 6 6.4701 -1.2730 0.3325
11 6 7.6256 -0.2708 0.4193
12 6 8.3473 -0.4453 1.7575
13 6 7.3746 -0.1611 2.9043
14 1 6.9852 0.8524 2.8082
15 7 8.0744 -0.2974 4.1841
16 6 8.7793 0.7595 4.6950
17 1 8.8198 1.6935 4.1544
18 6 9.4419 0.6304 5.9080
19 7 9.3922 -0.5076 6.5672
20 14 10.4041 2.0721 6.6046
21 1 9.4887 3.2220 6.8165
22 1 11.0139 1.6801 7.9007
23 1 11.4741 2.4602 5.6509
24 6 6.2162 -1.1618 2.8457
25 6 2.2235 -1.1098 0.0005
26 8 1.7946 -2.2442 0.0084
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 1.8986 1.9382 -0.7104
31 1 2.3290 1.6440 1.0000
32 1 4.4754 1.3010 0.0973
33 1 3.8274 0.8445 -1.5136
34 1 6.8672 -2.2880 0.3138
35 1 5.8929 -1.0874 -0.5734
36 1 7.2337 0.7437 0.3469
37 1 8.3248 -0.4504 -0.3973
38 1 9.1853 0.2497 1.8113
39 1 8.7173 -1.4672 1.8399
40 1 8.0383 -1.1364 4.6696
41 1 9.8555 -0.5980 7.4146
42 1 6.5924 -2.1676 3.0319
43 1 5.4713 -0.9028 3.5982
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000999945327.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:23:43
Heat of formation + Delta-G solvation = -47.443391 kcal
Electronic energy + Delta-G solvation = -24648.769764 eV
Core-core repulsion = 21115.393203 eV
Total energy + Delta-G solvation = -3533.376561 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 295.168 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.22235 -39.39110 -37.27952 -36.53375 -34.59452 -33.19631 -32.13901 -31.27300
-28.87196 -27.84230 -26.97250 -25.20642 -23.91059 -22.56838 -22.10754 -20.68337
-19.61580 -18.83115 -17.73080 -17.21946 -16.85681 -16.32146 -15.66536 -15.29043
-14.93435 -14.67666 -14.16325 -14.08149 -13.87103 -13.73071 -13.52990 -13.36829
-13.03659 -12.96129 -12.78910 -12.63167 -12.41188 -12.26565 -11.77783 -11.72261
-11.10874 -10.98316 -10.91759 -10.69334 -10.46522 -10.39438 -10.14046 -10.03855
-9.78767 -9.62888 -8.93688 -8.93187 -8.47200 -7.01906 -5.79746 -3.09855
2.25925 2.54689 2.77027 3.16022 3.42054 3.46635 3.47732 3.98227
4.13692 4.33112 4.53673 4.56955 4.74623 4.86726 5.01884 5.07058
5.10900 5.17611 5.22197 5.30675 5.43259 5.48550 5.49884 5.52605
5.60557 5.64712 5.72401 5.77852 5.99654 6.11737 6.19724 6.25253
6.34627 6.50048 6.63860 6.82452 6.84425 7.00482 7.45843 7.65814
7.96417 8.17754 8.37970 9.49052 10.04207 10.39053 11.42600
Molecular weight = 295.17amu
Principal moments of inertia in cm(-1)
A = 0.024786 B = 0.003500 C = 0.003396
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1129.384543 B = 7997.262150 C = 8242.731664
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.095 3.905
2 N -0.618 5.618
3 C 0.103 3.897
4 C -0.119 4.119
5 C -0.151 4.151
6 H 0.128 0.872
7 C 0.533 3.467
8 O -0.531 6.531
9 N -0.599 5.599
10 C 0.103 3.897
11 C -0.132 4.132
12 C -0.138 4.138
13 C 0.170 3.830
14 H 0.050 0.950
15 N -0.721 5.721
16 C -0.241 4.241
17 H 0.070 0.930
18 C -0.011 4.011
19 N -0.931 5.931
20 Si 0.908 3.092
21 H -0.286 1.286
22 H -0.291 1.291
23 H -0.286 1.286
24 C 0.106 3.894
25 C 0.544 3.456
26 O -0.524 6.524
27 H 0.082 0.918
28 H 0.063 0.937
29 H 0.061 0.939
30 H 0.083 0.917
31 H 0.078 0.922
32 H 0.098 0.902
33 H 0.095 0.905
34 H 0.071 0.929
35 H 0.080 0.920
36 H 0.063 0.937
37 H 0.069 0.931
38 H 0.066 0.934
39 H 0.057 0.943
40 H 0.385 0.615
41 H 0.257 0.743
42 H 0.067 0.933
43 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.799 2.977 -19.586 23.058
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 N -0.352 5.352
3 C -0.020 4.020
4 C -0.157 4.157
5 C -0.176 4.176
6 H 0.146 0.854
7 C 0.319 3.681
8 O -0.407 6.407
9 N -0.333 5.333
10 C -0.020 4.020
11 C -0.171 4.171
12 C -0.179 4.179
13 C 0.059 3.941
14 H 0.068 0.932
15 N -0.362 5.362
16 C -0.372 4.372
17 H 0.088 0.912
18 C -0.207 4.207
19 N -0.579 5.579
20 Si 0.739 3.261
21 H -0.212 1.212
22 H -0.217 1.217
23 H -0.212 1.212
24 C -0.016 4.016
25 C 0.330 3.670
26 O -0.399 6.399
27 H 0.101 0.899
28 H 0.081 0.919
29 H 0.080 0.920
30 H 0.101 0.899
31 H 0.096 0.904
32 H 0.117 0.883
33 H 0.114 0.886
34 H 0.090 0.910
35 H 0.098 0.902
36 H 0.082 0.918
37 H 0.088 0.912
38 H 0.085 0.915
39 H 0.076 0.924
40 H 0.219 0.781
41 H 0.066 0.934
42 H 0.085 0.915
43 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -12.425 2.560 -18.957 22.810
hybrid contribution 0.742 0.535 0.542 1.063
sum -11.683 3.095 -18.415 22.027
Atomic orbital electron populations
1.21559 0.77718 1.03848 1.01503 1.47986 1.06625 1.07157 1.73449
1.22105 0.89947 0.87329 1.02601 1.22595 0.97686 0.92457 1.02950
1.22214 0.96248 1.00569 0.98557 0.85446 1.19651 0.82164 0.76919
0.89385 1.90751 1.59448 1.50280 1.40242 1.48039 1.06328 1.70628
1.08257 1.21888 0.92385 1.00257 0.87438 1.21935 0.96883 0.98964
0.99315 1.22299 0.99863 1.02052 0.93686 1.20467 0.90041 0.96392
0.87247 0.93235 1.42304 1.59373 1.14883 1.19648 1.19145 1.23530
0.92423 1.02144 0.91195 1.24753 1.01180 0.97168 0.97618 1.69644
1.47525 1.24196 1.16530 0.86264 0.79824 0.81805 0.78248 1.21226
1.21666 1.21245 1.22052 0.96649 1.00350 0.82557 1.20043 0.87687
0.84474 0.74781 1.90719 1.78061 1.21065 1.50083 0.89905 0.91855
0.92018 0.89876 0.90414 0.88312 0.88630 0.91024 0.90185 0.91780
0.91206 0.91479 0.92401 0.78149 0.93352 0.91477 0.88892
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.82 11.14 59.85 0.67 1.49 16
2 N -0.62 -6.81 3.33 -180.29 -0.60 -7.41 16
3 C 0.10 0.84 7.35 -3.12 -0.02 0.82 16
4 C -0.12 -0.90 6.70 -25.10 -0.17 -1.06 16
5 C -0.15 -1.71 2.47 -91.78 -0.23 -1.93 16
6 H 0.13 1.15 6.23 -51.93 -0.32 0.82 16
7 C 0.53 8.14 6.75 -10.99 -0.07 8.07 16
8 O -0.53 -10.42 15.75 5.55 0.09 -10.33 16
9 N -0.60 -8.62 2.97 -172.77 -0.51 -9.13 16
10 C 0.10 1.10 6.28 -3.71 -0.02 1.07 16
11 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16
12 C -0.14 -2.23 5.46 -26.69 -0.15 -2.38 16
13 C 0.17 3.25 2.92 -67.81 -0.20 3.05 16
14 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16
15 N -0.72 -17.68 5.12 -53.31 -0.27 -17.95 16
16 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16
17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16
18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16
19 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16
20 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16
21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
24 C 0.11 1.87 5.89 -3.71 -0.02 1.85 16
25 C 0.54 7.64 6.76 -10.86 -0.07 7.57 16
26 O -0.52 -9.34 17.35 5.56 0.10 -9.24 16
27 H 0.08 0.82 7.53 -51.93 -0.39 0.43 16
28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16
32 H 0.10 0.75 7.89 -51.93 -0.41 0.34 16
33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16
34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
35 H 0.08 0.61 5.46 -51.93 -0.28 0.33 16
36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
40 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16
41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
43 H 0.09 1.87 7.03 -51.93 -0.37 1.50 16
LS Contribution 347.42 15.07 5.24 5.24
Total: -1.00 -35.58 347.42 -7.67 -43.25
By element:
Atomic # 1 Polarization: 12.61 SS G_CDS: -6.71 Total: 5.91 kcal
Atomic # 6 Polarization: 10.47 SS G_CDS: -0.69 Total: 9.77 kcal
Atomic # 7 Polarization: -61.01 SS G_CDS: -0.66 Total: -61.67 kcal
Atomic # 8 Polarization: -19.76 SS G_CDS: 0.18 Total: -19.57 kcal
Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -35.58 -7.67 -43.25 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999945327.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.195 kcal
(2) G-P(sol) polarization free energy of solvation -35.579 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.774 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.443 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds