Wall clock time and date at job start Tue Mar 31 2020 03:23:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.46767 * 124.34677 * 2 1
4 4 C 1.54479 * 105.46720 * 196.99443 * 3 2 1
5 5 C 1.54627 * 101.76935 * 334.58383 * 4 3 2
6 6 H 1.09002 * 110.59615 * 143.52979 * 5 4 3
7 7 C 1.50702 * 110.48658 * 266.12005 * 5 4 3
8 8 O 1.21285 * 119.99736 * 90.41613 * 7 5 4
9 9 N 1.34774 * 119.99904 * 270.41345 * 7 5 4
10 10 C 1.46922 * 120.63244 * 355.52094 * 9 7 5
11 11 C 1.53195 * 108.76599 * 126.36040 * 10 9 7
12 12 C 1.53045 * 109.30793 * 54.65591 * 11 10 9
13 13 C 1.53037 * 109.52963 * 298.61423 * 12 11 10
14 14 H 1.08997 * 109.49830 * 301.42158 * 13 12 11
15 15 N 1.46500 * 109.49681 * 181.32566 * 13 12 11
16 16 C 1.36933 * 120.00046 * 85.00132 * 15 13 12
17 17 H 1.07997 * 120.00331 * 359.97438 * 16 15 13
18 18 C 1.38812 * 119.99665 * 179.97438 * 16 15 13
19 19 N 1.31611 * 120.00556 * 359.97438 * 18 16 15
20 20 Si 1.86807 * 119.99610 * 179.97438 * 18 16 15
21 21 H 1.48497 * 109.46905 * 60.00423 * 20 18 16
22 22 H 1.48501 * 109.46856 * 179.97438 * 20 18 16
23 23 H 1.48499 * 109.47261 * 299.99830 * 20 18 16
24 24 C 1.46924 * 120.62953 * 175.50402 * 9 7 5
25 25 C 1.34417 * 124.34896 * 179.97438 * 2 1 3
26 26 O 1.21278 * 124.94160 * 359.57624 * 25 2 1
27 27 H 1.08995 * 109.46931 * 180.02562 * 1 2 3
28 28 H 1.09000 * 109.46856 * 299.99880 * 1 2 3
29 29 H 1.08998 * 109.47128 * 60.00009 * 1 2 3
30 30 H 1.08993 * 110.24531 * 315.99548 * 3 2 1
31 31 H 1.08996 * 110.24206 * 77.90927 * 3 2 1
32 32 H 1.09003 * 110.97057 * 216.46391 * 4 3 2
33 33 H 1.09005 * 110.96933 * 92.70756 * 4 3 2
34 34 H 1.09003 * 109.59089 * 246.15672 * 10 9 7
35 35 H 1.09004 * 109.59028 * 6.58382 * 10 9 7
36 36 H 1.08995 * 109.51023 * 294.70165 * 11 10 9
37 37 H 1.08997 * 109.48946 * 174.59921 * 11 10 9
38 38 H 1.09006 * 109.45399 * 178.59949 * 12 11 10
39 39 H 1.08996 * 109.45842 * 58.63409 * 12 11 10
40 40 H 0.97002 * 119.99849 * 264.99661 * 15 13 12
41 41 H 0.96997 * 120.00469 * 179.97438 * 19 18 16
42 42 H 1.08990 * 109.59076 * 113.84347 * 24 9 7
43 43 H 1.08999 * 109.58773 * 353.41225 * 24 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2931 1.2118 0.0000
4 6 3.7011 0.7486 -0.4352
5 6 3.6898 -0.7378 -0.0093
6 1 4.2333 -1.3477 -0.7310
7 6 4.2835 -0.8968 1.3668
8 8 3.5695 -0.8391 2.3455
9 7 5.6076 -1.1030 1.5097
10 6 6.4701 -1.2730 0.3325
11 6 7.6256 -0.2708 0.4193
12 6 8.3473 -0.4453 1.7575
13 6 7.3746 -0.1611 2.9043
14 1 6.9852 0.8524 2.8082
15 7 8.0744 -0.2974 4.1841
16 6 8.7793 0.7595 4.6950
17 1 8.8198 1.6935 4.1544
18 6 9.4419 0.6304 5.9080
19 7 9.3922 -0.5076 6.5672
20 14 10.4041 2.0721 6.6046
21 1 9.4887 3.2220 6.8165
22 1 11.0139 1.6801 7.9007
23 1 11.4741 2.4602 5.6509
24 6 6.2162 -1.1618 2.8457
25 6 2.2235 -1.1098 0.0005
26 8 1.7946 -2.2442 0.0084
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 1.8986 1.9382 -0.7104
31 1 2.3290 1.6440 1.0000
32 1 4.4754 1.3010 0.0973
33 1 3.8274 0.8445 -1.5136
34 1 6.8672 -2.2880 0.3138
35 1 5.8929 -1.0874 -0.5734
36 1 7.2337 0.7437 0.3469
37 1 8.3248 -0.4504 -0.3973
38 1 9.1853 0.2497 1.8113
39 1 8.7173 -1.4672 1.8399
40 1 8.0383 -1.1364 4.6696
41 1 9.8555 -0.5980 7.4146
42 1 6.5924 -2.1676 3.0319
43 1 5.4713 -0.9028 3.5982
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000999945327.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:23:36
Heat of formation + Delta-G solvation = -73.855910 kcal
Electronic energy + Delta-G solvation = -24649.915097 eV
Core-core repulsion = 21115.393203 eV
Total energy + Delta-G solvation = -3534.521894 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 295.168 amu
Computer time = 6.76 seconds
Orbital eigenvalues (eV)
-42.22732 -40.53404 -38.63139 -37.52346 -36.25097 -34.28893 -33.49719 -32.75399
-30.33723 -28.89350 -27.78092 -26.40415 -25.73896 -23.46157 -23.35621 -21.88276
-20.78953 -19.94999 -19.15147 -18.77866 -17.79155 -17.39043 -16.82297 -16.54681
-16.21890 -16.04682 -15.49956 -15.36465 -15.14965 -14.77916 -14.72229 -14.61891
-14.42349 -13.99737 -13.80821 -13.59343 -13.51236 -13.19631 -12.92909 -12.83060
-12.50095 -12.42554 -12.31493 -12.17277 -12.11035 -11.81973 -11.70484 -11.61113
-11.07805 -10.89130 -10.87452 -9.76451 -9.73691 -9.03219 -7.94936 -5.24884
1.19379 1.40950 1.47343 1.50525 1.56440 1.91644 2.12096 2.56959
3.10927 3.37494 3.40837 3.45751 3.76839 3.88205 4.01868 4.08107
4.09432 4.17723 4.28067 4.33849 4.37764 4.41976 4.61014 4.62613
4.65796 4.78368 4.82373 4.83843 4.86885 4.92916 5.04265 5.11010
5.19806 5.40696 5.43490 5.49260 5.51247 5.62281 5.97999 6.26068
6.31843 6.96975 7.03119 7.31910 8.05277 8.28719 9.28418
Molecular weight = 295.17amu
Principal moments of inertia in cm(-1)
A = 0.024786 B = 0.003500 C = 0.003396
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1129.384543 B = 7997.262150 C = 8242.731664
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.617 5.617
3 C 0.095 3.905
4 C -0.108 4.108
5 C -0.143 4.143
6 H 0.158 0.842
7 C 0.527 3.473
8 O -0.587 6.587
9 N -0.596 5.596
10 C 0.097 3.903
11 C -0.120 4.120
12 C -0.130 4.130
13 C 0.170 3.830
14 H 0.039 0.961
15 N -0.738 5.738
16 C -0.239 4.239
17 H 0.078 0.922
18 C -0.076 4.076
19 N -0.971 5.971
20 Si 0.974 3.026
21 H -0.279 1.279
22 H -0.298 1.298
23 H -0.274 1.274
24 C 0.118 3.882
25 C 0.526 3.474
26 O -0.577 6.577
27 H 0.062 0.938
28 H 0.069 0.931
29 H 0.097 0.903
30 H 0.124 0.876
31 H 0.060 0.940
32 H 0.102 0.898
33 H 0.141 0.859
34 H 0.080 0.920
35 H 0.124 0.876
36 H 0.074 0.926
37 H 0.105 0.895
38 H 0.049 0.951
39 H 0.051 0.949
40 H 0.371 0.629
41 H 0.251 0.749
42 H 0.063 0.937
43 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.501 4.968 -23.298 26.453
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.053 4.053
2 N -0.349 5.349
3 C -0.027 4.027
4 C -0.146 4.146
5 C -0.167 4.167
6 H 0.175 0.825
7 C 0.315 3.685
8 O -0.467 6.467
9 N -0.328 5.328
10 C -0.024 4.024
11 C -0.159 4.159
12 C -0.170 4.170
13 C 0.061 3.939
14 H 0.058 0.942
15 N -0.378 5.378
16 C -0.370 4.370
17 H 0.096 0.904
18 C -0.268 4.268
19 N -0.621 5.621
20 Si 0.803 3.197
21 H -0.205 1.205
22 H -0.224 1.224
23 H -0.199 1.199
24 C -0.006 4.006
25 C 0.313 3.687
26 O -0.457 6.457
27 H 0.081 0.919
28 H 0.088 0.912
29 H 0.115 0.885
30 H 0.142 0.858
31 H 0.079 0.921
32 H 0.120 0.880
33 H 0.159 0.841
34 H 0.099 0.901
35 H 0.142 0.858
36 H 0.093 0.907
37 H 0.123 0.877
38 H 0.068 0.932
39 H 0.070 0.930
40 H 0.203 0.797
41 H 0.060 0.940
42 H 0.082 0.918
43 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -12.129 4.617 -22.761 26.201
hybrid contribution 0.552 -0.065 1.672 1.762
sum -11.577 4.552 -21.089 24.484
Atomic orbital electron populations
1.21742 0.76773 1.03237 1.03530 1.48263 1.07660 1.07448 1.71536
1.22385 0.90431 0.86850 1.03001 1.22775 0.97130 0.89025 1.05631
1.22247 0.94419 1.03969 0.96112 0.82485 1.20443 0.81909 0.75532
0.90618 1.90727 1.60762 1.52672 1.42533 1.48096 1.06728 1.70005
1.07933 1.22263 0.92181 1.00730 0.87199 1.21886 0.97188 0.99842
0.96953 1.22098 0.98679 1.01077 0.95187 1.20632 0.90804 0.96195
0.86298 0.94244 1.42526 1.59821 1.13783 1.21626 1.19540 1.22456
0.93104 1.01951 0.90449 1.25584 1.03076 0.99755 0.98397 1.69815
1.49155 1.26351 1.16824 0.85208 0.78615 0.78744 0.77179 1.20549
1.22411 1.19937 1.21606 0.95228 0.99520 0.84224 1.20605 0.89220
0.84395 0.74465 1.90679 1.79168 1.23132 1.52739 0.91885 0.91237
0.88497 0.85802 0.92129 0.87953 0.84139 0.90139 0.85785 0.90682
0.87702 0.93241 0.93036 0.79698 0.94043 0.91824 0.92310
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.41 11.14 127.77 1.42 2.83 16
2 N -0.62 -12.53 3.33 -842.91 -2.81 -15.34 16
3 C 0.10 1.24 7.35 86.83 0.64 1.88 16
4 C -0.11 -1.13 6.70 31.65 0.21 -0.92 16
5 C -0.14 -2.84 2.47 -11.55 -0.03 -2.87 16
6 H 0.16 2.09 6.23 -2.39 -0.01 2.08 16
7 C 0.53 15.70 6.75 87.66 0.59 16.29 16
8 O -0.59 -23.89 15.75 -3.04 -0.05 -23.94 16
9 N -0.60 -16.39 2.97 -818.91 -2.43 -18.82 16
10 C 0.10 1.68 6.28 86.36 0.54 2.22 16
11 C -0.12 -2.23 6.08 30.67 0.19 -2.04 16
12 C -0.13 -4.01 5.46 30.62 0.17 -3.85 16
13 C 0.17 6.57 2.92 45.07 0.13 6.70 16
14 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16
15 N -0.74 -37.29 5.12 -322.58 -1.65 -38.94 16
16 C -0.24 -13.17 9.93 84.03 0.83 -12.33 16
17 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16
18 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16
19 N -0.97 -59.98 13.06 21.65 0.28 -59.69 16
20 Si 0.97 45.95 29.55 68.60 2.03 47.98 16
21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
22 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16
23 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16
24 C 0.12 4.28 5.89 86.36 0.51 4.79 16
25 C 0.53 14.27 6.76 87.90 0.59 14.86 16
26 O -0.58 -20.94 17.35 -3.02 -0.05 -20.99 16
27 H 0.06 1.26 7.53 -2.39 -0.02 1.24 16
28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16
30 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16
31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
32 H 0.10 1.09 7.89 -2.39 -0.02 1.07 16
33 H 0.14 0.33 8.14 -2.38 -0.02 0.31 16
34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
35 H 0.12 1.13 5.46 -2.38 -0.01 1.12 16
36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
37 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16
38 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16
39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16
40 H 0.37 20.41 7.80 -92.71 -0.72 19.69 16
41 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16
42 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16
43 H 0.06 2.52 7.03 -2.39 -0.02 2.51 16
Total: -1.00 -84.11 347.42 1.87 -82.24
By element:
Atomic # 1 Polarization: 23.54 SS G_CDS: 0.29 Total: 23.83 kcal
Atomic # 6 Polarization: 17.42 SS G_CDS: 6.27 Total: 23.68 kcal
Atomic # 7 Polarization: -126.19 SS G_CDS: -6.61 Total: -132.80 kcal
Atomic # 8 Polarization: -44.83 SS G_CDS: -0.10 Total: -44.93 kcal
Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal
Total: -84.11 1.87 -82.24 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999945327.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.384 kcal
(2) G-P(sol) polarization free energy of solvation -84.112 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.728 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.240 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 6.76 seconds