Wall clock time and date at job start Tue Mar 31 2020 03:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34415 * 124.35113 * 2 1 4 4 O 1.21286 * 124.94332 * 359.56340 * 3 2 1 5 5 C 1.51285 * 110.11703 * 179.59720 * 3 2 1 6 6 C 1.54632 * 104.19213 * 343.74624 * 5 3 2 7 7 C 1.46765 * 124.34699 * 180.02562 * 2 1 3 8 8 H 1.09002 * 110.32077 * 316.05180 * 7 2 1 9 9 C 1.50698 * 110.24503 * 78.01351 * 7 2 1 10 10 O 1.21276 * 120.00564 * 16.04840 * 9 7 2 11 11 N 1.34784 * 119.99966 * 196.04538 * 9 7 2 12 12 C 1.46928 * 120.62829 * 359.97438 * 11 9 7 13 13 C 1.53191 * 108.77343 * 126.41175 * 12 11 9 14 14 C 1.53039 * 109.31416 * 54.63452 * 13 12 11 15 15 C 1.53070 * 109.65812 * 298.69913 * 14 13 12 16 16 H 1.08997 * 109.38860 * 301.27396 * 15 14 13 17 17 N 1.46498 * 109.62217 * 181.16721 * 15 14 13 18 18 C 1.36936 * 119.99993 * 85.10793 * 17 15 14 19 19 H 1.07997 * 119.99979 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00011 * 180.02562 * 18 17 15 21 21 N 1.31615 * 119.99945 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99971 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46882 * 89.99662 * 22 20 18 24 24 H 1.48492 * 109.47245 * 210.00037 * 22 20 18 25 25 H 1.48500 * 109.47169 * 330.00130 * 22 20 18 26 26 C 1.46919 * 120.63188 * 179.97438 * 11 9 7 27 27 H 1.09004 * 109.46664 * 269.99664 * 1 2 3 28 28 H 1.08999 * 109.47314 * 29.99144 * 1 2 3 29 29 H 1.08997 * 109.47143 * 150.00110 * 1 2 3 30 30 H 1.09003 * 110.48257 * 225.06996 * 5 3 2 31 31 H 1.08999 * 110.59698 * 102.48269 * 5 3 2 32 32 H 1.09002 * 110.97009 * 266.67803 * 6 5 3 33 33 H 1.08999 * 110.99506 * 142.92872 * 6 5 3 34 34 H 1.08998 * 109.58787 * 246.20220 * 12 11 9 35 35 H 1.09007 * 109.58600 * 6.48533 * 12 11 9 36 36 H 1.09002 * 109.49529 * 174.58688 * 13 12 11 37 37 H 1.09005 * 109.49968 * 294.64599 * 13 12 11 38 38 H 1.09007 * 109.45640 * 58.65727 * 14 13 12 39 39 H 1.09000 * 109.45893 * 178.62518 * 14 13 12 40 40 H 0.97005 * 120.00342 * 265.10679 * 17 15 14 41 41 H 0.97004 * 119.99948 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.58751 * 353.37646 * 26 11 9 43 43 H 1.08996 * 109.58750 * 113.65831 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2442 -0.0076 5 6 3.6899 0.7378 0.0100 6 6 3.7010 -0.7488 0.4356 7 6 2.2931 -1.2117 -0.0005 8 1 1.8990 -1.9398 0.7085 9 6 2.3449 -1.8073 -1.3839 10 8 2.0060 -1.1457 -2.3421 11 7 2.7678 -3.0754 -1.5562 12 6 3.1822 -3.8893 -0.4052 13 6 2.3956 -5.2037 -0.4221 14 6 2.5846 -5.8893 -1.7773 15 6 2.0434 -4.9883 -2.8901 16 1 0.9878 -4.7850 -2.7099 17 7 2.1993 -5.6571 -4.1841 18 6 1.2454 -6.5381 -4.6188 19 1 0.3783 -6.7403 -4.0075 20 6 1.3934 -7.1722 -5.8448 21 7 2.4503 -6.9263 -6.5895 22 14 0.0925 -8.3747 -6.4375 23 1 -0.9370 -7.6442 -7.2197 24 1 0.7268 -9.4068 -7.2962 25 1 -0.5467 -9.0288 -5.2675 26 6 2.8233 -3.6702 -2.8985 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5138 30 1 4.2327 1.3459 0.7337 31 1 4.1215 0.8533 -0.9842 32 1 3.8269 -0.8449 1.5140 33 1 4.4753 -1.3015 -0.0964 34 1 4.2492 -4.1011 -0.4726 35 1 2.9745 -3.3486 0.5183 36 1 2.7615 -5.8568 0.3702 37 1 1.3373 -4.9965 -0.2631 38 1 3.6455 -6.0740 -1.9459 39 1 2.0456 -6.8367 -1.7832 40 1 2.9783 -5.4758 -4.7331 41 1 2.5536 -7.3691 -7.4464 42 1 2.3767 -2.9860 -3.6200 43 1 3.8612 -3.8617 -3.1706 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999983037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:30 Heat of formation + Delta-G solvation = -47.619672 kcal Electronic energy + Delta-G solvation = -24682.295365 eV Core-core repulsion = 21148.911160 eV Total energy + Delta-G solvation = -3533.384205 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23093 -39.47930 -37.46996 -36.25360 -34.60914 -33.09228 -32.24166 -31.35728 -29.22875 -27.77116 -26.86385 -25.27502 -23.91752 -22.70080 -22.12168 -20.57090 -19.69231 -18.98625 -17.69654 -17.26146 -16.86482 -16.34263 -15.67566 -15.24688 -14.93497 -14.67061 -14.23205 -14.12272 -13.94320 -13.75104 -13.50497 -13.37913 -13.08988 -12.99487 -12.79835 -12.67622 -12.44678 -12.28012 -11.76012 -11.59766 -11.15968 -11.03298 -10.95499 -10.72873 -10.49023 -10.43840 -10.15610 -10.05891 -9.97385 -9.74574 -8.96770 -8.85755 -8.53354 -7.04739 -5.82654 -3.12679 2.33542 2.49349 2.66837 3.07950 3.40307 3.45532 3.46923 4.01204 4.08348 4.23036 4.44531 4.53976 4.69908 4.85281 4.96224 5.03375 5.10727 5.19492 5.29644 5.33842 5.42458 5.46225 5.47276 5.53451 5.59590 5.61255 5.67593 5.72038 5.93404 6.06744 6.14344 6.18198 6.30401 6.45790 6.58580 6.78872 6.85842 6.96453 7.41085 7.64305 7.96423 8.14161 8.35159 9.46490 10.01060 10.35848 11.39727 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026077 B = 0.003471 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.481916 B = 8064.958888 C = 8382.448445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.600 5.600 3 C 0.525 3.475 4 O -0.532 6.532 5 C -0.155 4.155 6 C -0.120 4.120 7 C 0.112 3.888 8 H 0.112 0.888 9 C 0.498 3.502 10 O -0.526 6.526 11 N -0.601 5.601 12 C 0.104 3.896 13 C -0.134 4.134 14 C -0.138 4.138 15 C 0.169 3.831 16 H 0.049 0.951 17 N -0.721 5.721 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.106 3.894 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.092 0.908 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.815 8.821 19.479 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.334 5.334 3 C 0.313 3.687 4 O -0.408 6.408 5 C -0.195 4.195 6 C -0.158 4.158 7 C 0.004 3.996 8 H 0.130 0.870 9 C 0.283 3.717 10 O -0.402 6.402 11 N -0.335 5.335 12 C -0.019 4.019 13 C -0.173 4.173 14 C -0.179 4.179 15 C 0.058 3.942 16 H 0.067 0.933 17 N -0.362 5.362 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.017 4.017 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.149 9.680 18.891 21.459 hybrid contribution -0.483 -1.009 -0.642 1.290 sum 2.666 8.671 18.249 20.379 Atomic orbital electron populations 1.21566 0.77418 1.03816 1.01528 1.47829 1.06573 1.05904 1.73074 1.20801 0.89200 0.84179 0.74514 1.90718 1.78746 1.20921 1.50460 1.22351 0.94966 0.96950 1.05252 1.22603 0.94332 0.95813 1.03052 1.21682 0.93619 0.88781 0.95534 0.86991 1.20838 0.77862 0.81818 0.91144 1.90744 1.47517 1.60083 1.41849 1.48143 1.64586 1.11867 1.08872 1.21868 0.99508 0.92537 0.87946 1.21937 1.00315 0.95705 0.99308 1.22296 1.01685 1.00339 0.93550 1.20450 0.97044 0.89354 0.87334 0.93323 1.42302 1.26372 1.50505 1.17001 1.19191 1.00544 1.16476 1.01021 0.91165 1.24749 0.97976 1.00713 0.97248 1.69657 1.28611 1.46579 1.13037 0.86190 0.80860 0.80655 0.78466 1.21641 1.21723 1.20742 1.22023 1.01077 0.96141 0.82451 0.92351 0.90410 0.90920 0.87577 0.87407 0.88507 0.88483 0.90931 0.90328 0.91160 0.91860 0.92392 0.91505 0.78169 0.93403 0.88961 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.03 10.96 59.85 0.66 1.69 16 2 N -0.60 -6.99 2.55 -174.01 -0.44 -7.43 16 3 C 0.52 6.85 8.02 -10.86 -0.09 6.76 16 4 O -0.53 -8.94 17.59 5.55 0.10 -8.84 16 5 C -0.16 -1.37 6.85 -26.74 -0.18 -1.56 16 6 C -0.12 -0.78 6.24 -25.09 -0.16 -0.94 16 7 C 0.11 1.05 2.53 -68.16 -0.17 0.88 16 8 H 0.11 0.75 6.70 -51.93 -0.35 0.40 16 9 C 0.50 6.69 6.87 -10.98 -0.08 6.61 16 10 O -0.53 -9.57 15.97 5.56 0.09 -9.49 16 11 N -0.60 -7.66 2.97 -172.79 -0.51 -8.17 16 12 C 0.10 0.94 6.18 -3.71 -0.02 0.92 16 13 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 14 C -0.14 -2.15 5.47 -26.67 -0.15 -2.30 16 15 C 0.17 3.17 2.92 -67.81 -0.20 2.98 16 16 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 17 N -0.72 -17.42 5.13 -53.31 -0.27 -17.69 16 18 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 22 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.11 1.75 5.90 -3.73 -0.02 1.72 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.91 7.92 -51.93 -0.41 0.50 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.57 7.89 -51.93 -0.41 0.16 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.46 5.37 -51.92 -0.28 0.18 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.38 9.88 7.80 -40.82 -0.32 9.56 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.09 1.78 7.01 -51.93 -0.36 1.42 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -35.11 348.06 -7.66 -42.77 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.75 Total: 5.38 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -0.82 Total: 8.10 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.51 Total: -60.19 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.19 Total: -18.33 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.11 -7.66 -42.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999983037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.846 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds