Wall clock time and date at job start Tue Mar 31 2020 03:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 120.00189 * 2 1 4 4 O 1.21278 * 119.99853 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99719 * 359.97438 * 3 2 1 6 6 H 1.09005 * 110.21957 * 320.47433 * 5 3 2 7 7 C 1.54484 * 110.24626 * 82.49978 * 5 3 2 8 8 C 1.54634 * 101.76240 * 144.41452 * 7 5 3 9 9 C 1.51283 * 104.19837 * 335.20184 * 8 7 5 10 10 O 1.21281 * 124.94110 * 196.27962 * 9 8 7 11 11 N 1.34419 * 110.11244 * 16.25081 * 9 8 7 12 12 C 1.46499 * 119.99546 * 179.97438 * 2 1 3 13 13 C 1.53037 * 109.45890 * 299.93052 * 12 2 1 14 14 C 1.53200 * 109.30883 * 181.38544 * 13 12 2 15 15 N 1.46916 * 108.77890 * 305.36816 * 14 13 12 16 16 C 1.36937 * 120.63495 * 233.58945 * 15 14 13 17 17 H 1.08000 * 120.00005 * 27.69412 * 16 15 14 18 18 C 1.38816 * 120.00323 * 207.69855 * 16 15 14 19 19 N 1.31620 * 119.99791 * 17.35473 * 18 16 15 20 20 Si 1.86800 * 120.00086 * 197.35012 * 18 16 15 21 21 H 1.48497 * 109.46819 * 59.99959 * 20 18 16 22 22 H 1.48496 * 109.46830 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47148 * 299.99810 * 20 18 16 24 24 C 1.46926 * 118.73800 * 53.60758 * 15 14 13 25 25 C 1.53034 * 109.46285 * 60.00385 * 12 2 1 26 26 H 1.08998 * 109.47401 * 270.00375 * 1 2 3 27 27 H 1.09006 * 109.46800 * 30.00375 * 1 2 3 28 28 H 1.08998 * 109.47211 * 149.99673 * 1 2 3 29 29 H 1.09000 * 110.96647 * 262.53183 * 7 5 3 30 30 H 1.08998 * 110.97111 * 26.29402 * 7 5 3 31 31 H 1.09000 * 110.48204 * 216.51939 * 8 7 5 32 32 H 1.08995 * 110.59823 * 93.93723 * 8 7 5 33 33 H 0.97005 * 124.35002 * 180.42961 * 11 9 8 34 34 H 1.08998 * 109.44316 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.50599 * 301.33666 * 13 12 2 36 36 H 1.09002 * 109.49611 * 61.44272 * 13 12 2 37 37 H 1.09002 * 109.58270 * 185.58185 * 14 13 12 38 38 H 1.09003 * 109.58603 * 65.15851 * 14 13 12 39 39 H 0.97002 * 119.99650 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.58743 * 186.60377 * 24 15 14 41 41 H 1.09001 * 109.58975 * 66.17759 * 24 15 14 42 42 H 1.09003 * 109.49951 * 298.56605 * 25 12 2 43 43 H 1.09008 * 109.49922 * 58.62535 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.5141 2.4039 -0.6519 7 6 0.9538 2.8410 1.4362 8 6 1.0928 4.3810 1.4217 9 6 2.1145 4.6511 0.3392 10 8 2.7134 5.6958 0.1944 11 7 2.2623 3.5647 -0.4384 12 6 2.1974 -1.2688 0.0006 13 6 1.8288 -2.0697 1.2514 14 6 2.6224 -3.3800 1.2661 15 7 2.3848 -4.0910 0.0026 16 6 1.9517 -5.3901 0.0036 17 1 1.3691 -5.7644 0.8324 18 6 2.2616 -6.2260 -1.0604 19 7 3.2318 -5.9038 -1.8895 20 14 1.3018 -7.8081 -1.3156 21 1 -0.1344 -7.4887 -1.5167 22 1 1.8241 -8.5164 -2.5116 23 1 1.4531 -8.6770 -0.1210 24 6 2.6212 -3.3818 -1.2623 25 6 1.8276 -2.0716 -1.2487 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5139 29 1 -0.0786 2.5442 1.6215 30 1 1.6241 2.3956 2.1713 31 1 1.4537 4.7404 2.3853 32 1 0.1406 4.8496 1.1731 33 1 2.8705 3.5097 -1.1921 34 1 3.2690 -1.0692 0.0000 35 1 2.0710 -1.4878 2.1407 36 1 0.7615 -2.2909 1.2403 37 1 2.2918 -3.9981 2.1009 38 1 3.6855 -3.1622 1.3686 39 1 3.4481 -6.4877 -2.6332 40 1 2.2898 -4.0011 -2.0959 41 1 3.6842 -3.1641 -1.3661 42 1 0.7603 -2.2927 -1.2363 43 1 2.0684 -1.4906 -2.1391 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005182145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:40 Heat of formation + Delta-G solvation = -42.650648 kcal Electronic energy + Delta-G solvation = -24593.582824 eV Core-core repulsion = 21060.414092 eV Total energy + Delta-G solvation = -3533.168732 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.09133 -39.51175 -37.59684 -36.28788 -35.26918 -32.60524 -31.62025 -30.44508 -29.80675 -28.32072 -27.03094 -25.07374 -23.16277 -22.28312 -21.86318 -20.80634 -19.67664 -18.97111 -17.75220 -17.53938 -16.82804 -16.12104 -15.87598 -15.36480 -14.92674 -14.71127 -14.01175 -13.94531 -13.75423 -13.67574 -13.47342 -13.27328 -13.10191 -12.92129 -12.67856 -12.50519 -12.32357 -12.10445 -11.56141 -11.52287 -11.18050 -10.88948 -10.76399 -10.42625 -10.30743 -10.18432 -10.15949 -10.05613 -9.79026 -9.68481 -9.21410 -8.62766 -8.41648 -6.75231 -5.84254 -3.26829 2.30433 2.41799 2.78553 3.22759 3.34602 3.40796 3.41329 3.96105 3.99887 4.26634 4.44761 4.46736 4.63761 4.91393 5.05229 5.21812 5.25371 5.28660 5.35585 5.36619 5.42811 5.51182 5.56062 5.61454 5.77788 5.99463 6.11553 6.24137 6.39305 6.42439 6.48225 6.54296 6.69727 6.73634 6.79151 6.88860 7.26394 7.37552 7.58870 7.73973 7.95630 8.09613 8.38986 9.15179 9.78455 10.34990 11.24482 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.040994 B = 0.003162 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.870308 B = 8852.748768 C = 9005.052118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.601 5.601 3 C 0.501 3.499 4 O -0.531 6.531 5 C 0.111 3.889 6 H 0.106 0.894 7 C -0.120 4.120 8 C -0.154 4.154 9 C 0.523 3.477 10 O -0.534 6.534 11 N -0.708 5.708 12 C 0.144 3.856 13 C -0.136 4.136 14 C 0.147 3.853 15 N -0.592 5.592 16 C -0.256 4.256 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.174 3.826 25 C -0.145 4.145 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.416 0.584 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.020 0.980 39 H 0.255 0.745 40 H 0.091 0.909 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.936 15.736 4.848 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.334 5.334 3 C 0.287 3.713 4 O -0.407 6.407 5 C 0.002 3.998 6 H 0.124 0.876 7 C -0.158 4.158 8 C -0.194 4.194 9 C 0.309 3.691 10 O -0.411 6.411 11 N -0.364 5.364 12 C 0.042 3.958 13 C -0.177 4.177 14 C 0.020 3.980 15 N -0.315 5.315 16 C -0.385 4.385 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.047 3.953 25 C -0.185 4.185 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.256 0.744 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.976 16.174 4.725 19.092 hybrid contribution -0.326 -1.041 -0.587 1.239 sum -9.302 15.133 4.138 18.238 Atomic orbital electron populations 1.21889 0.79916 1.03471 1.02042 1.48169 1.07058 1.06230 1.71906 1.20581 0.88251 0.85243 0.77264 1.90743 1.13594 1.86951 1.49433 1.21707 0.93331 0.86314 0.98475 0.87635 1.22589 1.03894 0.95172 0.94138 1.22369 1.00346 0.96642 1.00089 1.20827 0.82596 0.82859 0.82844 1.90767 1.50452 1.27055 1.72790 1.45984 1.43513 1.13224 1.33706 1.21255 0.97297 0.80692 0.96546 1.22358 1.01440 0.98031 0.95833 1.20871 0.95820 0.90924 0.90397 1.44087 1.77784 1.10212 0.99391 1.19137 1.26456 0.86620 1.06290 0.91630 1.25055 0.96902 0.97710 0.99914 1.70024 1.28176 1.38503 1.17900 0.86362 0.79771 0.83189 0.77391 1.21030 1.21628 1.20863 1.20762 0.95311 0.88646 0.90575 1.22567 1.01665 0.99009 0.95286 0.92261 0.91396 0.90007 0.88083 0.89237 0.87560 0.87336 0.74433 0.88669 0.92962 0.91994 0.92401 0.96231 0.93486 0.89055 0.96159 0.92283 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 9.26 59.85 0.55 1.14 16 2 N -0.60 -7.48 2.76 -173.89 -0.48 -7.96 16 3 C 0.50 6.45 6.86 -10.99 -0.08 6.38 16 4 O -0.53 -9.25 15.91 5.56 0.09 -9.16 16 5 C 0.11 0.97 3.12 -68.16 -0.21 0.75 16 6 H 0.11 0.64 6.33 -51.93 -0.33 0.31 16 7 C -0.12 -0.76 6.56 -25.09 -0.16 -0.93 16 8 C -0.15 -1.06 6.86 -26.74 -0.18 -1.24 16 9 C 0.52 5.96 8.43 -10.86 -0.09 5.87 16 10 O -0.53 -8.34 18.03 5.56 0.10 -8.24 16 11 N -0.71 -7.51 5.47 -53.88 -0.29 -7.81 16 12 C 0.14 2.34 2.48 -67.89 -0.17 2.17 16 13 C -0.14 -2.20 5.34 -26.61 -0.14 -2.34 16 14 C 0.15 2.96 6.52 -3.71 -0.02 2.93 16 15 N -0.59 -14.24 2.99 -172.32 -0.52 -14.76 16 16 C -0.26 -6.76 9.59 -15.06 -0.14 -6.91 16 17 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 18 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 19 N -0.90 -25.64 11.19 55.49 0.62 -25.02 16 20 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 25 C -0.15 -2.59 5.31 -26.62 -0.14 -2.73 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.37 5.95 -51.93 -0.31 0.06 16 28 H 0.08 0.78 6.45 -51.93 -0.34 0.44 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.69 7.90 -51.93 -0.41 0.28 16 31 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.42 4.58 8.96 -40.82 -0.37 4.22 16 34 H 0.10 1.82 6.90 -51.93 -0.36 1.46 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 37 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 43 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -33.79 340.04 -7.80 -41.58 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.51 Total: 1.15 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -0.90 Total: 9.06 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.67 Total: -55.54 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.19 Total: -17.40 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.79 -7.80 -41.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005182145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.066 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds