Wall clock time and date at job start Tue Mar 31 2020 03:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 120.00189 * 2 1 4 4 O 1.21278 * 119.99853 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99719 * 359.97438 * 3 2 1 6 6 H 1.09005 * 110.21957 * 320.47433 * 5 3 2 7 7 C 1.54484 * 110.24626 * 82.49978 * 5 3 2 8 8 C 1.54634 * 101.76240 * 144.41452 * 7 5 3 9 9 C 1.51283 * 104.19837 * 335.20184 * 8 7 5 10 10 O 1.21281 * 124.94110 * 196.27962 * 9 8 7 11 11 N 1.34419 * 110.11244 * 16.25081 * 9 8 7 12 12 C 1.46499 * 119.99546 * 179.97438 * 2 1 3 13 13 C 1.53037 * 109.45890 * 299.93052 * 12 2 1 14 14 C 1.53200 * 109.30883 * 181.38544 * 13 12 2 15 15 N 1.46916 * 108.77890 * 305.36816 * 14 13 12 16 16 C 1.36937 * 120.63495 * 233.58945 * 15 14 13 17 17 H 1.08000 * 120.00005 * 27.69412 * 16 15 14 18 18 C 1.38816 * 120.00323 * 207.69855 * 16 15 14 19 19 N 1.31620 * 119.99791 * 17.35473 * 18 16 15 20 20 Si 1.86800 * 120.00086 * 197.35012 * 18 16 15 21 21 H 1.48497 * 109.46819 * 59.99959 * 20 18 16 22 22 H 1.48496 * 109.46830 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47148 * 299.99810 * 20 18 16 24 24 C 1.46926 * 118.73800 * 53.60758 * 15 14 13 25 25 C 1.53034 * 109.46285 * 60.00385 * 12 2 1 26 26 H 1.08998 * 109.47401 * 270.00375 * 1 2 3 27 27 H 1.09006 * 109.46800 * 30.00375 * 1 2 3 28 28 H 1.08998 * 109.47211 * 149.99673 * 1 2 3 29 29 H 1.09000 * 110.96647 * 262.53183 * 7 5 3 30 30 H 1.08998 * 110.97111 * 26.29402 * 7 5 3 31 31 H 1.09000 * 110.48204 * 216.51939 * 8 7 5 32 32 H 1.08995 * 110.59823 * 93.93723 * 8 7 5 33 33 H 0.97005 * 124.35002 * 180.42961 * 11 9 8 34 34 H 1.08998 * 109.44316 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.50599 * 301.33666 * 13 12 2 36 36 H 1.09002 * 109.49611 * 61.44272 * 13 12 2 37 37 H 1.09002 * 109.58270 * 185.58185 * 14 13 12 38 38 H 1.09003 * 109.58603 * 65.15851 * 14 13 12 39 39 H 0.97002 * 119.99650 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.58743 * 186.60377 * 24 15 14 41 41 H 1.09001 * 109.58975 * 66.17759 * 24 15 14 42 42 H 1.09003 * 109.49951 * 298.56605 * 25 12 2 43 43 H 1.09008 * 109.49922 * 58.62535 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.5141 2.4039 -0.6519 7 6 0.9538 2.8410 1.4362 8 6 1.0928 4.3810 1.4217 9 6 2.1145 4.6511 0.3392 10 8 2.7134 5.6958 0.1944 11 7 2.2623 3.5647 -0.4384 12 6 2.1974 -1.2688 0.0006 13 6 1.8288 -2.0697 1.2514 14 6 2.6224 -3.3800 1.2661 15 7 2.3848 -4.0910 0.0026 16 6 1.9517 -5.3901 0.0036 17 1 1.3691 -5.7644 0.8324 18 6 2.2616 -6.2260 -1.0604 19 7 3.2318 -5.9038 -1.8895 20 14 1.3018 -7.8081 -1.3156 21 1 -0.1344 -7.4887 -1.5167 22 1 1.8241 -8.5164 -2.5116 23 1 1.4531 -8.6770 -0.1210 24 6 2.6212 -3.3818 -1.2623 25 6 1.8276 -2.0716 -1.2487 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5139 29 1 -0.0786 2.5442 1.6215 30 1 1.6241 2.3956 2.1713 31 1 1.4537 4.7404 2.3853 32 1 0.1406 4.8496 1.1731 33 1 2.8705 3.5097 -1.1921 34 1 3.2690 -1.0692 0.0000 35 1 2.0710 -1.4878 2.1407 36 1 0.7615 -2.2909 1.2403 37 1 2.2918 -3.9981 2.1009 38 1 3.6855 -3.1622 1.3686 39 1 3.4481 -6.4877 -2.6332 40 1 2.2898 -4.0011 -2.0959 41 1 3.6842 -3.1641 -1.3661 42 1 0.7603 -2.2927 -1.2363 43 1 2.0684 -1.4906 -2.1391 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005182145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:39 Heat of formation + Delta-G solvation = -67.737979 kcal Electronic energy + Delta-G solvation = -24594.670693 eV Core-core repulsion = 21060.414092 eV Total energy + Delta-G solvation = -3534.256600 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.96182 -40.55512 -39.01785 -37.24210 -36.60293 -34.30371 -32.31834 -31.99596 -31.44719 -29.26361 -27.89800 -26.76036 -24.24055 -23.88721 -23.05534 -21.57575 -20.95315 -20.23441 -18.80652 -18.53614 -18.35311 -17.25396 -16.77802 -16.73524 -16.26815 -15.86855 -15.44926 -15.38483 -14.91513 -14.74668 -14.63712 -14.37609 -14.15317 -14.04092 -13.91078 -13.51691 -13.19964 -13.07171 -12.99442 -12.80437 -12.56625 -12.53153 -12.07164 -12.06901 -12.01149 -11.89174 -11.46428 -11.33382 -11.12020 -10.97473 -10.55733 -10.12231 -9.59571 -8.72542 -7.87797 -5.33715 1.44028 1.48299 1.49458 1.51030 1.58318 1.87561 2.41241 2.52290 3.25408 3.28391 3.34954 3.62341 3.66376 3.89493 3.93786 4.06631 4.09617 4.30566 4.38196 4.45868 4.50692 4.65929 4.72390 4.79539 4.83647 4.85831 4.96931 5.03419 5.06248 5.07916 5.10628 5.15004 5.31138 5.45805 5.55891 5.63740 5.66974 5.69493 5.93503 6.37920 6.41843 7.06122 7.13368 7.16297 7.83897 8.36523 9.19155 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.040994 B = 0.003162 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.870308 B = 8852.748768 C = 9005.052118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.596 5.596 3 C 0.497 3.503 4 O -0.588 6.588 5 C 0.117 3.883 6 H 0.147 0.853 7 C -0.111 4.111 8 C -0.142 4.142 9 C 0.510 3.490 10 O -0.589 6.589 11 N -0.715 5.715 12 C 0.153 3.847 13 C -0.118 4.118 14 C 0.141 3.859 15 N -0.608 5.608 16 C -0.262 4.262 17 H 0.073 0.927 18 C -0.053 4.053 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.273 1.273 22 H -0.298 1.298 23 H -0.276 1.276 24 C 0.180 3.820 25 C -0.127 4.127 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.142 0.858 33 H 0.408 0.592 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.002 0.998 39 H 0.249 0.751 40 H 0.060 0.940 41 H -0.016 1.016 42 H 0.074 0.926 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.883 16.694 6.312 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.327 5.327 3 C 0.285 3.715 4 O -0.468 6.468 5 C 0.009 3.991 6 H 0.164 0.836 7 C -0.149 4.149 8 C -0.182 4.182 9 C 0.298 3.702 10 O -0.469 6.469 11 N -0.368 5.368 12 C 0.049 3.951 13 C -0.158 4.158 14 C 0.015 3.985 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.091 0.909 18 C -0.248 4.248 19 N -0.585 5.585 20 Si 0.798 3.202 21 H -0.198 1.198 22 H -0.225 1.225 23 H -0.202 1.202 24 C 0.054 3.946 25 C -0.167 4.167 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.166 0.834 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.160 0.840 33 H 0.246 0.754 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.002 0.998 42 H 0.093 0.907 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.995 17.129 6.224 22.384 hybrid contribution 0.976 -1.353 -1.026 1.959 sum -12.019 15.776 5.198 20.503 Atomic orbital electron populations 1.22291 0.76631 1.05005 1.04325 1.48072 1.08825 1.04487 1.71356 1.21380 0.87789 0.86554 0.75794 1.90732 1.16374 1.87761 1.51911 1.21981 0.93013 0.82931 1.01162 0.83595 1.22731 1.06166 0.94324 0.91695 1.22425 1.00078 0.97278 0.98373 1.21732 0.82845 0.82064 0.83539 1.90732 1.52768 1.29167 1.74275 1.46223 1.43469 1.13824 1.33284 1.20774 0.96003 0.82559 0.95724 1.22125 1.01444 0.95682 0.96506 1.21033 0.95663 0.92881 0.88950 1.44347 1.77919 1.10113 1.00798 1.19531 1.25830 0.87628 1.06242 0.90926 1.25854 0.97869 1.01046 1.00011 1.70205 1.30043 1.39736 1.18511 0.85306 0.78675 0.79373 0.76877 1.19839 1.22491 1.20183 1.20517 0.93955 0.90621 0.89542 1.22271 1.01362 0.96394 0.96625 0.89545 0.87584 0.90882 0.83413 0.90680 0.86906 0.84012 0.75410 0.92286 0.90823 0.90273 0.91769 0.98003 0.94157 0.92199 0.99763 0.90738 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 9.26 127.77 1.18 1.85 16 2 N -0.60 -13.09 2.76 -822.45 -2.27 -15.36 16 3 C 0.50 11.79 6.86 87.66 0.60 12.39 16 4 O -0.59 -20.72 15.91 -3.02 -0.05 -20.77 16 5 C 0.12 1.60 3.12 44.70 0.14 1.74 16 6 H 0.15 0.87 6.33 -2.38 -0.02 0.86 16 7 C -0.11 -0.86 6.56 31.65 0.21 -0.65 16 8 C -0.14 -1.38 6.86 30.59 0.21 -1.17 16 9 C 0.51 10.93 8.43 87.90 0.74 11.68 16 10 O -0.59 -18.55 18.03 -3.03 -0.05 -18.61 16 11 N -0.71 -14.16 5.47 -442.96 -2.42 -16.58 16 12 C 0.15 4.84 2.48 45.02 0.11 4.95 16 13 C -0.12 -3.56 5.34 30.67 0.16 -3.39 16 14 C 0.14 5.65 6.52 86.37 0.56 6.21 16 15 N -0.61 -29.73 2.99 -699.10 -2.09 -31.83 16 16 C -0.26 -13.95 9.59 84.03 0.81 -13.14 16 17 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 18 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 19 N -0.94 -55.41 11.19 21.65 0.24 -55.17 16 20 Si 0.97 43.59 29.59 68.60 2.03 45.62 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 24 C 0.18 8.62 5.31 86.36 0.46 9.08 16 25 C -0.13 -4.48 5.31 30.67 0.16 -4.32 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.11 0.43 5.95 -2.38 -0.01 0.42 16 28 H 0.07 1.04 6.45 -2.39 -0.02 1.02 16 29 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.07 0.87 7.90 -2.39 -0.02 0.85 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.41 9.04 8.96 -92.70 -0.83 8.21 16 34 H 0.06 2.33 6.90 -2.39 -0.02 2.31 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 2.17 7.72 -2.39 -0.02 2.15 16 37 H 0.06 2.45 7.93 -2.39 -0.02 2.44 16 38 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.06 3.23 6.04 -2.39 -0.01 3.21 16 41 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.07 2.43 6.72 -2.39 -0.02 2.41 16 43 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -80.49 340.04 1.34 -79.15 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.19 Total: 10.79 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 5.76 Total: 22.76 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -6.54 Total: -118.94 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.10 Total: -39.37 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -80.49 1.34 -79.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005182145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.413 kcal (2) G-P(sol) polarization free energy of solvation -80.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds