Wall clock time and date at job start Tue Mar 31 2020 03:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34421 * 124.34690 * 2 1 4 4 O 1.21280 * 124.94566 * 359.56409 * 3 2 1 5 5 C 1.51286 * 110.11400 * 179.57127 * 3 2 1 6 6 C 1.54627 * 104.19334 * 343.74560 * 5 3 2 7 7 C 1.46755 * 124.35191 * 179.97438 * 2 1 3 8 8 H 1.09003 * 110.32312 * 77.99892 * 7 2 1 9 9 C 1.50702 * 110.24435 * 316.03677 * 7 2 1 10 10 O 1.21280 * 120.00247 * 343.95354 * 9 7 2 11 11 N 1.34782 * 119.99905 * 163.94672 * 9 7 2 12 12 C 1.46500 * 119.99799 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.50151 * 324.79657 * 12 11 9 14 14 C 1.53039 * 109.49806 * 204.72912 * 12 11 9 15 15 C 1.53043 * 109.54022 * 178.68680 * 14 12 11 16 16 C 1.53194 * 109.31251 * 61.36366 * 15 14 12 17 17 N 1.46925 * 108.77359 * 305.36932 * 16 15 14 18 18 C 1.36942 * 120.62710 * 233.60706 * 17 16 15 19 19 H 1.08001 * 120.00063 * 27.68182 * 18 17 16 20 20 C 1.38811 * 119.99990 * 207.68133 * 18 17 16 21 21 N 1.31621 * 120.00282 * 17.35980 * 20 18 17 22 22 Si 1.86795 * 120.00163 * 197.35909 * 20 18 17 23 23 H 1.48504 * 109.47474 * 59.99970 * 22 20 18 24 24 H 1.48503 * 109.47595 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47378 * 300.00166 * 22 20 18 26 26 C 1.46921 * 118.74426 * 53.60738 * 17 16 15 27 27 H 1.09003 * 109.46954 * 270.02878 * 1 2 3 28 28 H 1.09004 * 109.46923 * 30.02417 * 1 2 3 29 29 H 1.08994 * 109.46661 * 150.02398 * 1 2 3 30 30 H 1.08997 * 110.48633 * 225.06661 * 5 3 2 31 31 H 1.09003 * 110.60043 * 102.47720 * 5 3 2 32 32 H 1.09004 * 110.96563 * 266.67892 * 6 5 3 33 33 H 1.09001 * 111.00395 * 142.93649 * 6 5 3 34 34 H 0.97002 * 119.99895 * 359.73365 * 11 9 7 35 35 H 1.09002 * 109.45796 * 298.70759 * 14 12 11 36 36 H 1.09001 * 109.46066 * 58.66324 * 14 12 11 37 37 H 1.08997 * 109.49748 * 181.31381 * 15 14 12 38 38 H 1.09004 * 109.49576 * 301.41311 * 15 14 12 39 39 H 1.08999 * 109.58727 * 65.15446 * 16 15 14 40 40 H 1.09000 * 109.58611 * 185.58255 * 16 15 14 41 41 H 0.96998 * 120.00509 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.59053 * 186.60675 * 26 17 16 43 43 H 1.09003 * 109.58664 * 66.18034 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2443 -0.0076 5 6 3.6898 0.7379 0.0106 6 6 3.7009 -0.7485 0.4366 7 6 2.2931 -1.2116 0.0005 8 1 2.3313 -1.6445 -0.9991 9 6 1.7472 -2.2159 0.9825 10 8 0.9519 -1.8662 1.8288 11 7 2.1426 -3.5030 0.9202 12 6 1.6122 -4.4792 1.8752 13 1 1.4674 -3.9996 2.8433 14 6 2.6002 -5.6386 2.0222 15 6 2.0624 -6.6430 3.0442 16 6 0.7271 -7.2057 2.5472 17 7 -0.1820 -6.0864 2.2649 18 6 -1.4286 -6.0406 2.8299 19 1 -1.6091 -6.5221 3.7796 20 6 -2.4602 -5.3752 2.1819 21 7 -2.3564 -5.0880 0.9016 22 14 -3.9959 -4.8874 3.1269 23 1 -3.6243 -3.9763 4.2392 24 1 -4.9401 -4.1948 2.2136 25 1 -4.6446 -6.1036 3.6792 26 6 0.2718 -5.0174 1.3650 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3632 -0.8902 -0.5134 30 1 4.2324 1.3462 0.7343 31 1 4.1219 0.8531 -0.9834 32 1 3.8264 -0.8442 1.5151 33 1 4.4755 -1.3015 -0.0948 34 1 2.7756 -3.7835 0.2409 35 1 2.7260 -6.1329 1.0589 36 1 3.5624 -5.2550 2.3617 37 1 2.7774 -7.4566 3.1656 38 1 1.9130 -6.1433 4.0014 39 1 0.8898 -7.7827 1.6369 40 1 0.2917 -7.8453 3.3149 41 1 -3.0771 -4.6227 0.4489 42 1 -0.4640 -4.2132 1.3527 43 1 0.3974 -5.4159 0.3582 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008201176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:20 Heat of formation + Delta-G solvation = -44.719454 kcal Electronic energy + Delta-G solvation = -24976.935137 eV Core-core repulsion = 21443.676695 eV Total energy + Delta-G solvation = -3533.258442 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.87461 -39.12320 -37.42698 -36.08513 -34.26194 -32.93876 -32.60112 -30.15554 -29.54837 -27.65475 -26.58221 -25.31379 -23.10667 -22.22602 -21.80292 -20.30465 -19.64648 -19.15451 -17.52806 -16.87482 -16.76983 -16.01454 -15.56047 -15.10522 -14.85240 -14.35089 -14.04322 -13.95754 -13.70198 -13.60474 -13.49382 -13.06733 -12.76224 -12.52338 -12.44986 -12.36019 -12.05176 -11.94659 -11.87139 -11.36000 -11.05635 -10.82146 -10.72929 -10.54288 -10.30201 -10.08025 -9.98154 -9.92106 -9.64290 -9.57191 -8.66114 -8.60876 -8.46428 -6.70196 -5.79722 -3.22671 2.49262 2.72154 2.94640 3.39446 3.43992 3.46808 3.49490 4.13173 4.21753 4.50426 4.57151 4.74897 4.93729 5.15061 5.29543 5.34870 5.35781 5.40846 5.49057 5.57510 5.58662 5.63042 5.66628 5.74498 6.01707 6.07965 6.11085 6.27041 6.36359 6.38665 6.42539 6.63306 6.71651 6.83616 6.90912 7.05340 7.23197 7.65880 7.75934 7.81720 8.10391 8.43242 8.49711 9.19192 9.83082 10.37435 11.28337 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.005033 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.349822 B = 5562.061221 C = 7009.446716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.597 5.597 3 C 0.517 3.483 4 O -0.535 6.535 5 C -0.152 4.152 6 C -0.120 4.120 7 C 0.111 3.889 8 H 0.103 0.897 9 C 0.502 3.498 10 O -0.517 6.517 11 N -0.715 5.715 12 C 0.117 3.883 13 H 0.082 0.918 14 C -0.115 4.115 15 C -0.131 4.131 16 C 0.142 3.858 17 N -0.588 5.588 18 C -0.258 4.258 19 H 0.066 0.934 20 C 0.008 3.992 21 N -0.900 5.900 22 Si 0.902 3.098 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.167 3.833 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.393 0.607 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.094 0.906 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.593 4.015 -4.140 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.330 5.330 3 C 0.304 3.696 4 O -0.412 6.412 5 C -0.193 4.193 6 C -0.158 4.158 7 C 0.003 3.997 8 H 0.121 0.879 9 C 0.285 3.715 10 O -0.391 6.391 11 N -0.367 5.367 12 C 0.012 3.988 13 H 0.100 0.900 14 C -0.153 4.153 15 C -0.171 4.171 16 C 0.016 3.984 17 N -0.311 5.311 18 C -0.387 4.387 19 H 0.084 0.916 20 C -0.191 4.191 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.040 3.960 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.226 0.774 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.113 0.887 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 14.509 4.935 -3.616 15.746 hybrid contribution -0.557 -0.067 0.024 0.562 sum 13.952 4.867 -3.591 15.207 Atomic orbital electron populations 1.21615 0.76828 1.02451 1.03316 1.47858 1.07039 1.05609 1.72498 1.20806 0.89178 0.84232 0.75346 1.90718 1.78752 1.20877 1.50890 1.22346 0.94997 0.97077 1.04845 1.22592 0.94281 0.95492 1.03438 1.21692 0.91616 0.86640 0.99744 0.87898 1.20463 0.82301 0.83112 0.85623 1.90778 1.32811 1.78991 1.36525 1.46056 1.46911 1.08158 1.35533 1.22013 0.96332 0.87507 0.92985 0.90018 1.21671 0.97337 0.96422 0.99909 1.22007 0.98712 0.97774 0.98627 1.20961 0.89437 0.90544 0.97495 1.43957 1.13138 1.18950 1.55060 1.19115 0.85550 1.33439 1.00622 0.91630 1.25007 0.97470 1.01705 0.94924 1.70002 1.33160 1.43633 1.07587 0.86383 0.82615 0.78553 0.79310 1.20878 1.21585 1.20863 1.21087 0.91368 0.92599 0.90954 0.91147 0.91062 0.90890 0.87758 0.87508 0.89361 0.88200 0.77386 0.92213 0.93064 0.92583 0.92128 0.96384 0.92610 0.93614 0.88740 0.96523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.51 9.56 59.85 0.57 2.08 16 2 N -0.60 -8.39 3.01 -174.02 -0.52 -8.91 16 3 C 0.52 7.25 8.02 -10.86 -0.09 7.16 16 4 O -0.54 -9.56 17.59 5.56 0.10 -9.46 16 5 C -0.15 -1.32 6.86 -26.74 -0.18 -1.51 16 6 C -0.12 -0.95 6.67 -25.10 -0.17 -1.11 16 7 C 0.11 1.26 3.71 -68.17 -0.25 1.00 16 8 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 9 C 0.50 7.75 6.70 -10.98 -0.07 7.67 16 10 O -0.52 -10.67 14.60 5.56 0.08 -10.59 16 11 N -0.72 -10.10 5.08 -53.69 -0.27 -10.37 16 12 C 0.12 2.10 2.60 -67.81 -0.18 1.93 16 13 H 0.08 1.72 7.59 -51.93 -0.39 1.33 16 14 C -0.12 -1.70 5.35 -26.69 -0.14 -1.84 16 15 C -0.13 -2.10 6.08 -26.61 -0.16 -2.27 16 16 C 0.14 2.84 6.52 -3.71 -0.02 2.82 16 17 N -0.59 -14.52 2.99 -172.32 -0.52 -15.04 16 18 C -0.26 -7.12 9.59 -15.06 -0.14 -7.26 16 19 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 20 C 0.01 0.23 4.91 -17.43 -0.09 0.14 16 21 N -0.90 -26.22 11.19 55.49 0.62 -25.60 16 22 Si 0.90 22.29 29.59 -169.99 -5.03 17.26 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.17 3.88 4.88 -3.71 -0.02 3.86 16 27 H 0.07 1.22 7.46 -51.93 -0.39 0.84 16 28 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.39 3.99 8.60 -40.82 -0.35 3.64 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.09 2.61 6.04 -51.93 -0.31 2.29 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 346.04 15.07 5.21 5.21 Total: -1.00 -35.24 346.04 -8.15 -43.39 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.88 Total: 1.43 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -0.95 Total: 12.67 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.69 Total: -59.92 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.18 Total: -20.05 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.24 -8.15 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008201176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.327 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds