Wall clock time and date at job start Tue Mar 31 2020 03:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34421 * 124.34690 * 2 1 4 4 O 1.21280 * 124.94566 * 359.56409 * 3 2 1 5 5 C 1.51286 * 110.11400 * 179.57127 * 3 2 1 6 6 C 1.54627 * 104.19334 * 343.74560 * 5 3 2 7 7 C 1.46755 * 124.35191 * 179.97438 * 2 1 3 8 8 H 1.09003 * 110.32312 * 77.99892 * 7 2 1 9 9 C 1.50702 * 110.24435 * 316.03677 * 7 2 1 10 10 O 1.21280 * 120.00247 * 343.95354 * 9 7 2 11 11 N 1.34782 * 119.99905 * 163.94672 * 9 7 2 12 12 C 1.46500 * 119.99799 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.50151 * 324.79657 * 12 11 9 14 14 C 1.53039 * 109.49806 * 204.72912 * 12 11 9 15 15 C 1.53043 * 109.54022 * 178.68680 * 14 12 11 16 16 C 1.53194 * 109.31251 * 61.36366 * 15 14 12 17 17 N 1.46925 * 108.77359 * 305.36932 * 16 15 14 18 18 C 1.36942 * 120.62710 * 233.60706 * 17 16 15 19 19 H 1.08001 * 120.00063 * 27.68182 * 18 17 16 20 20 C 1.38811 * 119.99990 * 207.68133 * 18 17 16 21 21 N 1.31621 * 120.00282 * 17.35980 * 20 18 17 22 22 Si 1.86795 * 120.00163 * 197.35909 * 20 18 17 23 23 H 1.48504 * 109.47474 * 59.99970 * 22 20 18 24 24 H 1.48503 * 109.47595 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47378 * 300.00166 * 22 20 18 26 26 C 1.46921 * 118.74426 * 53.60738 * 17 16 15 27 27 H 1.09003 * 109.46954 * 270.02878 * 1 2 3 28 28 H 1.09004 * 109.46923 * 30.02417 * 1 2 3 29 29 H 1.08994 * 109.46661 * 150.02398 * 1 2 3 30 30 H 1.08997 * 110.48633 * 225.06661 * 5 3 2 31 31 H 1.09003 * 110.60043 * 102.47720 * 5 3 2 32 32 H 1.09004 * 110.96563 * 266.67892 * 6 5 3 33 33 H 1.09001 * 111.00395 * 142.93649 * 6 5 3 34 34 H 0.97002 * 119.99895 * 359.73365 * 11 9 7 35 35 H 1.09002 * 109.45796 * 298.70759 * 14 12 11 36 36 H 1.09001 * 109.46066 * 58.66324 * 14 12 11 37 37 H 1.08997 * 109.49748 * 181.31381 * 15 14 12 38 38 H 1.09004 * 109.49576 * 301.41311 * 15 14 12 39 39 H 1.08999 * 109.58727 * 65.15446 * 16 15 14 40 40 H 1.09000 * 109.58611 * 185.58255 * 16 15 14 41 41 H 0.96998 * 120.00509 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.59053 * 186.60675 * 26 17 16 43 43 H 1.09003 * 109.58664 * 66.18034 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2443 -0.0076 5 6 3.6898 0.7379 0.0106 6 6 3.7009 -0.7485 0.4366 7 6 2.2931 -1.2116 0.0005 8 1 2.3313 -1.6445 -0.9991 9 6 1.7472 -2.2159 0.9825 10 8 0.9519 -1.8662 1.8288 11 7 2.1426 -3.5030 0.9202 12 6 1.6122 -4.4792 1.8752 13 1 1.4674 -3.9996 2.8433 14 6 2.6002 -5.6386 2.0222 15 6 2.0624 -6.6430 3.0442 16 6 0.7271 -7.2057 2.5472 17 7 -0.1820 -6.0864 2.2649 18 6 -1.4286 -6.0406 2.8299 19 1 -1.6091 -6.5221 3.7796 20 6 -2.4602 -5.3752 2.1819 21 7 -2.3564 -5.0880 0.9016 22 14 -3.9959 -4.8874 3.1269 23 1 -3.6243 -3.9763 4.2392 24 1 -4.9401 -4.1948 2.2136 25 1 -4.6446 -6.1036 3.6792 26 6 0.2718 -5.0174 1.3650 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3632 -0.8902 -0.5134 30 1 4.2324 1.3462 0.7343 31 1 4.1219 0.8531 -0.9834 32 1 3.8264 -0.8442 1.5151 33 1 4.4755 -1.3015 -0.0948 34 1 2.7756 -3.7835 0.2409 35 1 2.7260 -6.1329 1.0589 36 1 3.5624 -5.2550 2.3617 37 1 2.7774 -7.4566 3.1656 38 1 1.9130 -6.1433 4.0014 39 1 0.8898 -7.7827 1.6369 40 1 0.2917 -7.8453 3.3149 41 1 -3.0771 -4.6227 0.4489 42 1 -0.4640 -4.2132 1.3527 43 1 0.3974 -5.4159 0.3582 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008201176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:19 Heat of formation + Delta-G solvation = -71.363038 kcal Electronic energy + Delta-G solvation = -24978.090490 eV Core-core repulsion = 21443.676695 eV Total energy + Delta-G solvation = -3534.413795 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.95371 -40.42246 -38.93515 -37.26668 -35.83102 -34.49460 -33.71430 -31.93525 -30.96297 -28.80333 -27.69104 -27.23626 -24.25003 -23.86367 -23.02896 -21.58368 -21.05997 -20.36613 -18.77130 -18.58877 -17.88279 -17.24505 -16.89876 -16.77291 -16.08013 -15.94981 -15.56221 -15.26918 -14.98158 -14.84365 -14.70364 -14.54351 -14.15270 -13.99898 -13.70533 -13.49039 -13.44337 -13.16468 -12.94434 -12.83332 -12.68551 -12.49047 -12.26770 -12.08531 -12.02064 -11.68008 -11.58150 -11.25131 -11.07166 -10.88997 -10.56817 -10.07734 -9.79160 -8.69398 -7.91540 -5.36057 1.37921 1.41675 1.43824 1.47858 1.56368 1.88425 2.26228 2.47074 3.24176 3.27382 3.42116 3.67011 3.84317 4.00099 4.01059 4.12239 4.17904 4.24645 4.29706 4.35695 4.50111 4.57830 4.64965 4.77860 4.83232 4.84806 4.94395 4.99253 5.07381 5.11530 5.22497 5.24952 5.29036 5.36109 5.47722 5.53732 5.61376 5.79597 6.02628 6.34972 6.64037 7.02439 7.11209 7.34812 7.85025 8.32407 9.12611 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.005033 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.349822 B = 5562.061221 C = 7009.446716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.607 5.607 3 C 0.502 3.498 4 O -0.585 6.585 5 C -0.137 4.137 6 C -0.106 4.106 7 C 0.113 3.887 8 H 0.142 0.858 9 C 0.497 3.503 10 O -0.579 6.579 11 N -0.698 5.698 12 C 0.133 3.867 13 H 0.047 0.953 14 C -0.105 4.105 15 C -0.123 4.123 16 C 0.135 3.865 17 N -0.611 5.611 18 C -0.266 4.266 19 H 0.065 0.935 20 C -0.045 4.045 21 N -0.927 5.927 22 Si 0.956 3.044 23 H -0.288 1.288 24 H -0.294 1.294 25 H -0.267 1.267 26 C 0.177 3.823 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.078 0.922 33 H 0.153 0.847 34 H 0.418 0.582 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.023 0.977 40 H 0.051 0.949 41 H 0.247 0.753 42 H 0.042 0.958 43 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.551 3.025 -4.878 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.339 5.339 3 C 0.292 3.708 4 O -0.466 6.466 5 C -0.177 4.177 6 C -0.144 4.144 7 C 0.006 3.994 8 H 0.159 0.841 9 C 0.282 3.718 10 O -0.457 6.457 11 N -0.351 5.351 12 C 0.026 3.974 13 H 0.065 0.935 14 C -0.143 4.143 15 C -0.162 4.162 16 C 0.010 3.990 17 N -0.335 5.335 18 C -0.396 4.396 19 H 0.083 0.917 20 C -0.241 4.241 21 N -0.573 5.573 22 Si 0.784 3.216 23 H -0.215 1.215 24 H -0.220 1.220 25 H -0.193 1.193 26 C 0.050 3.950 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.161 0.839 32 H 0.096 0.904 33 H 0.171 0.829 34 H 0.256 0.744 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 18.545 3.883 -4.372 19.445 hybrid contribution -1.808 0.183 0.275 1.838 sum 16.737 4.066 -4.097 17.704 Atomic orbital electron populations 1.21379 0.78760 1.02455 1.01178 1.48095 1.06515 1.07200 1.72140 1.21910 0.91641 0.83324 0.73893 1.90683 1.80136 1.22774 1.52990 1.22415 0.90471 0.97480 1.07329 1.22743 0.92826 0.95204 1.03600 1.22029 0.92732 0.84510 1.00150 0.84093 1.21334 0.81133 0.83935 0.85369 1.90769 1.35601 1.80080 1.39268 1.45789 1.46711 1.07210 1.35374 1.21463 0.95090 0.89126 0.91720 0.93517 1.21637 0.97510 0.94467 1.00684 1.21909 0.97054 0.99180 0.98103 1.21187 0.90716 0.89444 0.97678 1.44249 1.13127 1.21015 1.55072 1.19449 0.87003 1.32580 1.00600 0.91699 1.25677 1.00198 1.02544 0.95696 1.70139 1.33611 1.44788 1.08772 0.85514 0.79819 0.78403 0.77843 1.21485 1.21969 1.19268 1.20824 0.92921 0.90813 0.90424 0.94433 0.90639 0.91194 0.86524 0.83927 0.90374 0.82861 0.74382 0.90349 0.89132 0.88435 0.93349 0.95876 0.93039 0.94387 0.93940 0.97948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.42 9.56 127.77 1.22 4.64 16 2 N -0.61 -16.89 3.01 -823.07 -2.48 -19.37 16 3 C 0.50 13.61 8.02 87.90 0.71 14.31 16 4 O -0.59 -21.23 17.59 -3.03 -0.05 -21.28 16 5 C -0.14 -1.84 6.86 30.59 0.21 -1.63 16 6 C -0.11 -1.17 6.67 31.65 0.21 -0.96 16 7 C 0.11 2.25 3.71 44.70 0.17 2.42 16 8 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 9 C 0.50 15.02 6.70 87.66 0.59 15.61 16 10 O -0.58 -25.09 14.60 -3.03 -0.04 -25.13 16 11 N -0.70 -18.31 5.08 -442.15 -2.25 -20.55 16 12 C 0.13 4.67 2.60 45.07 0.12 4.79 16 13 H 0.05 2.00 7.59 -2.39 -0.02 1.98 16 14 C -0.11 -2.69 5.35 30.62 0.16 -2.52 16 15 C -0.12 -3.56 6.08 30.67 0.19 -3.37 16 16 C 0.13 5.25 6.52 86.36 0.56 5.81 16 17 N -0.61 -30.72 2.99 -699.10 -2.09 -32.82 16 18 C -0.27 -15.13 9.59 84.03 0.81 -14.32 16 19 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 20 C -0.05 -2.64 4.91 84.86 0.42 -2.22 16 21 N -0.93 -56.53 11.19 21.65 0.24 -56.29 16 22 Si 0.96 47.52 29.59 68.60 2.03 49.55 16 23 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 24 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 26 C 0.18 8.45 4.88 86.36 0.42 8.87 16 27 H 0.04 1.44 7.46 -2.39 -0.02 1.43 16 28 H 0.07 2.31 7.92 -2.38 -0.02 2.29 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.14 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.09 7.91 -2.39 -0.02 1.07 16 33 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.42 6.72 8.60 -92.71 -0.80 5.93 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 41 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 42 H 0.04 2.47 6.04 -2.39 -0.01 2.46 16 43 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -86.03 346.04 1.34 -84.69 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.21 Total: 9.78 kcal Atomic # 6 Polarization: 25.65 SS G_CDS: 5.78 Total: 31.43 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -6.58 Total: -129.03 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -0.10 Total: -46.41 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -86.03 1.34 -84.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008201176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.329 kcal (2) G-P(sol) polarization free energy of solvation -86.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds