Wall clock time and date at job start Tue Mar 31 2020 03:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21278 * 120.00043 * 2 1 4 4 N 1.34779 * 119.99938 * 179.97438 * 2 1 3 5 5 C 1.47425 * 125.64788 * 359.96205 * 4 2 1 6 6 C 1.54915 * 104.83207 * 204.16530 * 5 4 2 7 7 C 1.55159 * 101.57946 * 322.99064 * 6 5 4 8 8 H 1.08999 * 110.87337 * 277.06463 * 7 6 5 9 9 C 1.50703 * 110.71819 * 153.86440 * 7 6 5 10 10 O 1.21285 * 120.00008 * 5.02631 * 9 7 6 11 11 N 1.34776 * 119.99890 * 185.01991 * 9 7 6 12 12 C 1.46495 * 119.99803 * 180.02562 * 11 9 7 13 13 H 1.09000 * 110.78470 * 36.79251 * 12 11 9 14 14 C 1.55405 * 110.85076 * 160.08868 * 12 11 9 15 15 C 1.54914 * 101.66697 * 153.69955 * 14 12 11 16 16 N 1.47426 * 104.82992 * 323.07703 * 15 14 12 17 17 C 1.36936 * 125.64483 * 204.16378 * 16 15 14 18 18 H 1.08004 * 119.99836 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00358 * 359.95842 * 17 16 15 20 20 N 1.31619 * 119.99732 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46852 * 89.99788 * 21 19 17 23 23 H 1.48497 * 109.47226 * 209.99639 * 21 19 17 24 24 H 1.48500 * 109.46864 * 330.00142 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 16 15 14 26 26 C 1.47027 * 125.64911 * 180.02562 * 4 2 1 27 27 H 1.08992 * 109.47829 * 270.00572 * 1 2 3 28 28 H 1.08997 * 109.46770 * 30.01099 * 1 2 3 29 29 H 1.09003 * 109.46643 * 150.00464 * 1 2 3 30 30 H 1.09001 * 110.36987 * 322.99670 * 5 4 2 31 31 H 1.08994 * 110.36984 * 85.21571 * 5 4 2 32 32 H 1.08997 * 111.00631 * 204.91573 * 6 5 4 33 33 H 1.09004 * 111.00510 * 81.06349 * 6 5 4 34 34 H 0.96997 * 119.99763 * 0.02562 * 11 9 7 35 35 H 1.09000 * 110.89538 * 35.62760 * 14 12 11 36 36 H 1.09000 * 111.06973 * 271.84603 * 14 12 11 37 37 H 1.08999 * 110.37121 * 204.23438 * 15 14 12 38 38 H 1.09003 * 110.36718 * 81.91343 * 15 14 12 39 39 H 0.96996 * 119.99954 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.88241 * 118.36067 * 25 16 15 41 41 H 1.09000 * 109.88049 * 239.37196 * 25 16 15 42 42 H 1.08998 * 109.88525 * 59.48146 * 26 4 2 43 43 H 1.09007 * 110.00569 * 298.38717 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5729 -2.5103 0.0019 6 6 2.6545 -3.4345 0.6151 7 6 3.9549 -2.8233 0.0295 8 1 4.1412 -3.1979 -0.9770 9 6 5.1301 -3.1088 0.9286 10 8 4.9902 -3.8175 1.9029 11 7 6.3366 -2.5767 0.6500 12 6 7.4792 -2.8547 1.5238 13 1 7.4430 -3.8794 1.8935 14 6 8.8193 -2.5845 0.7847 15 6 9.7682 -2.2596 1.9653 16 7 8.9371 -1.5041 2.9204 17 6 9.4022 -0.6232 3.8600 18 1 8.7089 -0.1172 4.5157 19 6 10.7645 -0.3808 3.9701 20 7 11.6093 -0.9973 3.1710 21 14 11.3988 0.8215 5.2515 22 1 11.6779 0.0951 6.5164 23 1 12.6477 1.4563 4.7593 24 1 10.3748 1.8685 5.4975 25 6 7.5265 -1.8524 2.6963 26 6 3.6440 -1.3120 0.0011 27 1 -0.3634 0.0001 1.0275 28 1 -0.3633 0.8899 -0.5140 29 1 -0.3633 -0.8901 -0.5138 30 1 0.6734 -2.5190 0.6175 31 1 1.3383 -2.8216 -1.0159 32 1 2.5227 -4.4642 0.2827 33 1 2.6496 -3.3732 1.7034 34 1 6.4484 -2.0097 -0.1290 35 1 8.7271 -1.7322 0.1116 36 1 9.1552 -3.4706 0.2460 37 1 10.6037 -1.6488 1.6235 38 1 10.1320 -3.1791 2.4238 39 1 12.5613 -0.8282 3.2482 40 1 7.1110 -2.3115 3.5934 41 1 6.9595 -0.9570 2.4417 42 1 4.0638 -0.8303 0.8842 43 1 4.0634 -0.8643 -0.8999 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016120449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:28 Heat of formation + Delta-G solvation = -68.484132 kcal Electronic energy + Delta-G solvation = -24031.647939 eV Core-core repulsion = 20497.358983 eV Total energy + Delta-G solvation = -3534.288956 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.58477 -40.53981 -39.07894 -37.99524 -35.67408 -33.90936 -33.12796 -31.11431 -30.75766 -29.90275 -28.63205 -26.52659 -24.97853 -23.42948 -22.29044 -21.67747 -20.92963 -20.36549 -19.07671 -18.45482 -18.03801 -17.46431 -17.11384 -16.67711 -16.42750 -16.14995 -15.79983 -15.41517 -15.06572 -14.57030 -14.43632 -14.25802 -13.91536 -13.71126 -13.60067 -13.48842 -13.28554 -13.05026 -12.97112 -12.76587 -12.65181 -12.60057 -12.32550 -12.21019 -12.04827 -11.88200 -11.86073 -11.45776 -11.09831 -10.87542 -10.79809 -10.15729 -9.75106 -8.95949 -7.82951 -5.28176 1.43755 1.45832 1.49371 1.54879 1.56610 1.93536 2.16517 2.46977 3.26878 3.27839 3.44052 3.63685 3.71882 3.84790 3.87175 4.01371 4.16516 4.19219 4.26818 4.33225 4.48613 4.54886 4.59287 4.63158 4.71476 4.74943 4.81412 4.86070 4.96775 4.97832 5.01859 5.07702 5.20960 5.26023 5.39794 5.50212 5.58041 5.74355 6.26118 6.46194 6.52579 7.06059 7.08782 7.20200 7.71082 8.33916 9.18665 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.003335 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.991784 B = 8394.063083 C = 9279.205818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.513 3.487 3 O -0.606 6.606 4 N -0.621 5.621 5 C 0.100 3.900 6 C -0.112 4.112 7 C -0.108 4.108 8 H 0.153 0.847 9 C 0.519 3.481 10 O -0.576 6.576 11 N -0.704 5.704 12 C 0.149 3.851 13 H 0.084 0.916 14 C -0.126 4.126 15 C 0.152 3.848 16 N -0.624 5.624 17 C -0.248 4.248 18 H 0.072 0.928 19 C -0.061 4.061 20 N -0.945 5.945 21 Si 0.982 3.018 22 H -0.286 1.286 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.129 3.871 26 C 0.113 3.887 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.062 0.938 34 H 0.415 0.585 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.082 0.918 38 H -0.009 1.009 39 H 0.250 0.750 40 H 0.004 0.996 41 H 0.021 0.979 42 H 0.038 0.962 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.960 -6.432 -13.873 27.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.305 3.695 3 O -0.488 6.488 4 N -0.355 5.355 5 C -0.021 4.021 6 C -0.151 4.151 7 C -0.129 4.129 8 H 0.171 0.829 9 C 0.306 3.694 10 O -0.455 6.455 11 N -0.355 5.355 12 C 0.043 3.957 13 H 0.102 0.898 14 C -0.165 4.165 15 C 0.027 3.973 16 N -0.351 5.351 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.254 4.254 20 N -0.594 5.594 21 Si 0.809 3.191 22 H -0.213 1.213 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.002 3.998 26 C -0.011 4.011 27 H 0.125 0.875 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.252 0.748 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.009 0.991 39 H 0.060 0.940 40 H 0.022 0.978 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.623 -6.231 -13.119 26.884 hybrid contribution 1.072 0.977 0.972 1.746 sum -21.551 -5.255 -12.147 25.290 Atomic orbital electron populations 1.21911 0.87204 1.06574 1.06127 1.21508 0.92346 0.81275 0.74410 1.90731 1.72296 1.32936 1.52834 1.48722 1.06675 1.07418 1.72711 1.22721 0.96987 0.78861 1.03534 1.22736 0.90782 1.00737 1.00814 1.22438 0.93178 0.95491 1.01813 0.82941 1.20957 0.84332 0.78703 0.85418 1.90710 1.84731 1.39762 1.30345 1.45936 1.08458 1.51546 1.29596 1.21688 0.85972 0.97833 0.90217 0.89831 1.23164 0.93090 1.02545 0.97671 1.21793 0.94350 0.93561 0.87637 1.44732 1.01427 1.49138 1.39762 1.19400 0.91694 1.16411 1.10144 0.90982 1.25613 0.95770 1.02130 1.01837 1.69999 1.01728 1.46629 1.41016 0.85039 0.77557 0.78345 0.78122 1.21278 1.21230 1.19835 1.21673 0.86342 0.95753 0.96056 1.21762 0.82402 0.94874 1.02034 0.87512 0.88693 0.86798 0.87777 0.87371 0.86601 0.91922 0.74779 0.90039 0.88346 0.89992 0.99091 0.93981 0.97807 0.96140 0.94300 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.67 71.24 0.69 -0.88 16 2 C 0.51 10.86 7.96 87.66 0.70 11.56 16 3 O -0.61 -19.98 17.43 -3.02 -0.05 -20.04 16 4 N -0.62 -10.76 3.33 -811.78 -2.70 -13.46 16 5 C 0.10 0.83 6.27 86.86 0.54 1.37 16 6 C -0.11 -1.47 6.14 31.99 0.20 -1.27 16 7 C -0.11 -1.70 3.34 -10.35 -0.03 -1.74 16 8 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 9 C 0.52 13.58 7.01 87.66 0.61 14.19 16 10 O -0.58 -20.23 15.49 -3.04 -0.05 -20.28 16 11 N -0.70 -18.64 5.08 -436.51 -2.22 -20.86 16 12 C 0.15 5.28 3.24 46.27 0.15 5.43 16 13 H 0.08 3.15 7.70 -2.39 -0.02 3.13 16 14 C -0.13 -4.38 6.71 32.08 0.22 -4.17 16 15 C 0.15 7.48 5.89 86.86 0.51 7.99 16 16 N -0.62 -33.83 3.39 -691.97 -2.35 -36.18 16 17 C -0.25 -14.63 10.27 84.03 0.86 -13.77 16 18 H 0.07 4.19 7.83 -2.91 -0.02 4.16 16 19 C -0.06 -3.52 5.49 84.86 0.47 -3.06 16 20 N -0.94 -56.55 10.09 21.65 0.22 -56.33 16 21 Si 0.98 46.91 29.55 68.60 2.03 48.93 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 25 C 0.13 5.90 6.98 86.73 0.61 6.51 16 26 C 0.11 2.25 6.40 86.73 0.55 2.80 16 27 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.11 0.34 7.18 -2.39 -0.02 0.32 16 30 H 0.10 0.47 7.55 -2.39 -0.02 0.45 16 31 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.23 7.49 -2.39 -0.02 1.21 16 34 H 0.42 8.44 8.51 -92.71 -0.79 7.65 16 35 H 0.08 2.60 8.01 -2.39 -0.02 2.58 16 36 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.08 4.53 5.87 -2.39 -0.01 4.52 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 40 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.02 0.95 8.03 -2.39 -0.02 0.93 16 42 H 0.04 1.06 7.81 -2.39 -0.02 1.04 16 43 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -83.87 348.62 1.17 -82.69 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.22 Total: 10.54 kcal Atomic # 6 Polarization: 18.90 SS G_CDS: 6.07 Total: 24.97 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -7.05 Total: -126.82 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -0.10 Total: -40.31 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Total: -83.87 1.17 -82.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016120449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.208 kcal (2) G-P(sol) polarization free energy of solvation -83.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds