Wall clock time and date at job start Tue Mar 31 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.45762 * 117.94541 * 2 1 4 4 C 1.52980 * 110.51709 * 199.05502 * 3 2 1 5 5 H 1.08995 * 109.56745 * 69.02724 * 4 3 2 6 6 C 1.50703 * 109.65784 * 189.53253 * 4 3 2 7 7 O 1.21270 * 119.99982 * 119.19126 * 6 4 3 8 8 N 1.34770 * 119.99623 * 299.18663 * 6 4 3 9 9 C 1.46500 * 119.99849 * 180.02562 * 8 6 4 10 10 H 1.09002 * 110.88363 * 31.12311 * 9 8 6 11 11 C 1.55161 * 111.00251 * 154.99857 * 9 8 6 12 12 C 1.54329 * 102.93586 * 153.58080 * 11 9 8 13 13 N 1.47017 * 107.27521 * 337.80564 * 12 11 9 14 14 C 1.36935 * 125.64926 * 178.98981 * 13 12 11 15 15 H 1.07996 * 119.99995 * 179.97438 * 14 13 12 16 16 C 1.38815 * 120.00015 * 359.97222 * 14 13 12 17 17 N 1.31620 * 120.00058 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00052 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47060 * 90.00303 * 18 16 14 20 20 H 1.48499 * 109.47275 * 210.00350 * 18 16 14 21 21 H 1.48501 * 109.47287 * 330.00782 * 18 16 14 22 22 C 1.47424 * 108.70057 * 358.94522 * 13 12 11 23 23 C 1.53348 * 108.64659 * 309.30503 * 4 3 2 24 24 C 1.53069 * 108.45717 * 67.49790 * 23 4 3 25 25 C 1.33351 * 117.94905 * 180.02562 * 2 1 3 26 26 O 1.21283 * 118.24615 * 357.80516 * 25 2 1 27 27 H 1.09005 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47351 * 299.97921 * 1 2 3 29 29 H 1.09003 * 109.47435 * 59.98348 * 1 2 3 30 30 H 1.09001 * 109.29789 * 319.38298 * 3 2 1 31 31 H 1.08998 * 109.30421 * 78.96945 * 3 2 1 32 32 H 0.97000 * 120.00369 * 0.02562 * 8 6 4 33 33 H 1.09004 * 110.72226 * 271.93856 * 11 9 8 34 34 H 1.08989 * 110.72276 * 35.22032 * 11 9 8 35 35 H 1.08998 * 109.88187 * 97.23288 * 12 11 9 36 36 H 1.09005 * 109.87894 * 218.38963 * 12 11 9 37 37 H 0.97000 * 119.99974 * 179.97438 * 17 16 14 38 38 H 1.09001 * 110.36296 * 265.28771 * 22 13 12 39 39 H 1.09003 * 110.36330 * 142.96930 * 22 13 12 40 40 H 1.09002 * 109.67626 * 307.74280 * 23 4 3 41 41 H 1.09004 * 109.67030 * 187.24585 * 23 4 3 42 42 H 1.08995 * 109.40030 * 71.20205 * 24 23 4 43 43 H 1.08996 * 109.40535 * 190.95280 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5956 1.1267 -0.4678 5 1 3.6107 0.8738 -1.5279 6 6 4.3478 2.4126 -0.2405 7 8 5.3124 2.4291 0.4943 8 7 3.9485 3.5442 -0.8539 9 6 4.6801 4.7942 -0.6335 10 1 5.7366 4.5989 -0.4495 11 6 4.4941 5.7657 -1.8289 12 6 4.6963 7.1522 -1.1821 13 7 4.4331 7.0052 0.2569 14 6 4.5238 8.0026 1.1907 15 1 4.3087 7.7924 2.2280 16 6 4.8923 9.2840 0.8042 17 7 5.1541 9.5403 -0.4600 18 14 5.0154 10.6447 2.0780 19 1 6.3935 10.6830 2.6298 20 1 4.7007 11.9488 1.4412 21 1 4.0498 10.3840 3.1757 22 6 4.0544 5.6065 0.5277 23 6 4.2492 -0.0013 0.3397 24 6 3.5839 -1.3239 -0.0490 25 6 2.0899 -1.1780 -0.0005 26 8 1.4159 -2.1854 0.0399 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5135 0.8902 29 1 -0.3634 0.5141 -0.8898 30 1 1.6270 1.9718 -0.6697 31 1 2.1430 1.6982 1.0097 32 1 3.1768 3.5311 -1.4414 33 1 5.2482 5.5837 -2.5947 34 1 3.4908 5.6771 -2.2453 35 1 5.7212 7.4886 -1.3391 36 1 3.9984 7.8687 -1.6153 37 1 5.4112 10.4358 -0.7301 38 1 2.9696 5.4997 0.5238 39 1 4.4651 5.2805 1.4833 40 1 4.1087 0.1810 1.4051 41 1 5.3144 -0.0457 0.1124 42 1 3.8880 -1.5992 -1.0588 43 1 3.8943 -2.1036 0.6465 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016345718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:12 Heat of formation + Delta-G solvation = -45.472679 kcal Electronic energy + Delta-G solvation = -24129.153836 eV Core-core repulsion = 20595.862732 eV Total energy + Delta-G solvation = -3533.291104 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.02744 -39.65959 -37.47803 -36.43412 -34.35285 -34.10683 -32.03485 -30.37924 -29.13099 -27.51917 -27.09074 -24.98717 -24.51431 -23.07720 -20.71533 -20.43624 -19.97911 -19.01960 -17.65168 -16.97998 -16.82617 -16.55726 -16.08919 -15.58000 -15.06156 -14.72607 -14.62081 -14.25193 -14.00708 -13.76466 -13.56443 -12.98957 -12.94097 -12.52238 -12.48523 -12.30607 -12.09314 -12.03702 -11.85244 -11.56296 -11.29179 -11.06892 -10.94738 -10.80386 -10.43042 -10.13578 -9.97229 -9.95612 -9.81527 -9.69614 -9.09507 -8.85843 -8.63745 -6.88785 -5.75426 -3.09249 2.32961 2.45797 2.74514 3.14999 3.38941 3.44145 3.45678 4.17381 4.21983 4.32215 4.40231 4.49584 4.88027 4.91462 4.95094 5.03409 5.13508 5.18343 5.23551 5.35381 5.39218 5.47191 5.55996 5.57715 5.67031 5.68091 5.73556 5.86879 6.00802 6.10940 6.24551 6.35209 6.49798 6.61771 6.87931 7.06675 7.48233 7.52577 7.56794 7.77178 7.83127 8.19339 8.24843 9.17694 9.77603 10.41895 11.36434 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.030206 B = 0.002971 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.757492 B = 9422.987050 C = 9600.836000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.606 5.606 3 C 0.123 3.877 4 C -0.125 4.125 5 H 0.106 0.894 6 C 0.520 3.480 7 O -0.530 6.530 8 N -0.714 5.714 9 C 0.125 3.875 10 H 0.098 0.902 11 C -0.149 4.149 12 C 0.179 3.821 13 N -0.604 5.604 14 C -0.228 4.228 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.130 3.870 23 C -0.104 4.104 24 C -0.134 4.134 25 C 0.516 3.484 26 O -0.558 6.558 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.253 0.747 38 H 0.019 0.981 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.232 -18.152 -4.049 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.339 5.339 3 C -0.001 4.001 4 C -0.147 4.147 5 H 0.124 0.876 6 C 0.304 3.696 7 O -0.406 6.406 8 N -0.365 5.365 9 C 0.020 3.980 10 H 0.116 0.884 11 C -0.188 4.188 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.357 4.357 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.571 5.571 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.003 3.997 23 C -0.142 4.142 24 C -0.173 4.173 25 C 0.305 3.695 26 O -0.436 6.436 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.231 0.769 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.806 -18.404 -3.485 19.610 hybrid contribution -0.339 1.000 0.236 1.082 sum -6.145 -17.404 -3.249 18.741 Atomic orbital electron populations 1.21812 0.79203 1.04767 1.01674 1.47148 1.07684 1.05865 1.73169 1.21351 0.91051 0.84807 1.02849 1.21680 0.94881 0.95046 1.03051 0.87567 1.20119 0.84741 0.84459 0.80236 1.90741 1.27577 1.85624 1.36638 1.46063 1.33009 1.08893 1.48491 1.22360 0.96938 0.81490 0.97164 0.88433 1.23186 1.00780 0.98167 0.96704 1.21153 1.00820 0.89560 0.83104 1.44386 1.80631 1.03844 1.04200 1.19067 1.39877 0.87711 0.88999 0.90369 1.24806 1.01607 0.97472 0.96515 1.69943 1.52691 1.20315 1.14125 0.86095 0.77856 0.81458 0.80216 1.21528 1.21656 1.20669 1.21808 0.96228 0.85922 0.95791 1.21506 1.01032 0.90949 1.00752 1.21693 0.90628 0.99876 1.05129 1.20278 0.91174 0.82653 0.75370 1.90700 1.66471 1.35750 1.50726 0.88930 0.91944 0.91934 0.89745 0.90574 0.76897 0.91589 0.92044 0.93225 0.93557 0.93699 0.96335 0.93930 0.90234 0.89166 0.88021 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 10.47 59.84 0.63 1.15 16 2 N -0.61 -5.41 3.21 -182.81 -0.59 -5.99 16 3 C 0.12 0.94 5.57 -4.45 -0.02 0.92 16 4 C -0.12 -1.04 2.60 -91.60 -0.24 -1.28 16 5 H 0.11 0.69 8.12 -51.93 -0.42 0.27 16 6 C 0.52 6.37 7.13 -10.99 -0.08 6.29 16 7 O -0.53 -8.82 15.54 5.57 0.09 -8.73 16 8 N -0.71 -8.59 5.11 -51.73 -0.26 -8.85 16 9 C 0.13 2.08 3.42 -65.78 -0.23 1.86 16 10 H 0.10 1.83 7.54 -51.93 -0.39 1.44 16 11 C -0.15 -2.50 6.60 -24.89 -0.16 -2.66 16 12 C 0.18 4.13 5.37 -3.06 -0.02 4.12 16 13 N -0.60 -15.11 3.39 -170.08 -0.58 -15.68 16 14 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 16 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -26.63 10.31 55.49 0.57 -26.06 16 18 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.13 2.63 6.93 -2.53 -0.02 2.62 16 23 C -0.10 -0.89 4.71 -26.52 -0.12 -1.02 16 24 C -0.13 -1.05 6.03 -28.10 -0.17 -1.22 16 25 C 0.52 5.46 7.47 -11.87 -0.09 5.37 16 26 O -0.56 -7.88 15.95 5.55 0.09 -7.79 16 27 H 0.09 0.86 6.59 -51.93 -0.34 0.52 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.49 7.85 -51.93 -0.41 0.09 16 31 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 32 H 0.40 3.53 8.25 -40.82 -0.34 3.20 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 35 H 0.05 1.28 7.38 -51.93 -0.38 0.90 16 36 H 0.05 1.18 7.50 -51.93 -0.39 0.79 16 37 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 41 H 0.09 0.80 7.90 -51.93 -0.41 0.39 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -34.21 344.97 -8.12 -42.34 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.85 Total: -0.70 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -0.77 Total: 9.36 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.86 Total: -56.59 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.18 Total: -16.52 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.21 -8.12 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016345718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.135 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds