Wall clock time and date at job start Tue Mar 31 2020 03:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.45762 * 117.94541 * 2 1 4 4 C 1.52980 * 110.51709 * 199.05502 * 3 2 1 5 5 H 1.08995 * 109.56745 * 69.02724 * 4 3 2 6 6 C 1.50703 * 109.65784 * 189.53253 * 4 3 2 7 7 O 1.21270 * 119.99982 * 119.19126 * 6 4 3 8 8 N 1.34770 * 119.99623 * 299.18663 * 6 4 3 9 9 C 1.46500 * 119.99849 * 180.02562 * 8 6 4 10 10 H 1.09002 * 110.88363 * 31.12311 * 9 8 6 11 11 C 1.55161 * 111.00251 * 154.99857 * 9 8 6 12 12 C 1.54329 * 102.93586 * 153.58080 * 11 9 8 13 13 N 1.47017 * 107.27521 * 337.80564 * 12 11 9 14 14 C 1.36935 * 125.64926 * 178.98981 * 13 12 11 15 15 H 1.07996 * 119.99995 * 179.97438 * 14 13 12 16 16 C 1.38815 * 120.00015 * 359.97222 * 14 13 12 17 17 N 1.31620 * 120.00058 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00052 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47060 * 90.00303 * 18 16 14 20 20 H 1.48499 * 109.47275 * 210.00350 * 18 16 14 21 21 H 1.48501 * 109.47287 * 330.00782 * 18 16 14 22 22 C 1.47424 * 108.70057 * 358.94522 * 13 12 11 23 23 C 1.53348 * 108.64659 * 309.30503 * 4 3 2 24 24 C 1.53069 * 108.45717 * 67.49790 * 23 4 3 25 25 C 1.33351 * 117.94905 * 180.02562 * 2 1 3 26 26 O 1.21283 * 118.24615 * 357.80516 * 25 2 1 27 27 H 1.09005 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47351 * 299.97921 * 1 2 3 29 29 H 1.09003 * 109.47435 * 59.98348 * 1 2 3 30 30 H 1.09001 * 109.29789 * 319.38298 * 3 2 1 31 31 H 1.08998 * 109.30421 * 78.96945 * 3 2 1 32 32 H 0.97000 * 120.00369 * 0.02562 * 8 6 4 33 33 H 1.09004 * 110.72226 * 271.93856 * 11 9 8 34 34 H 1.08989 * 110.72276 * 35.22032 * 11 9 8 35 35 H 1.08998 * 109.88187 * 97.23288 * 12 11 9 36 36 H 1.09005 * 109.87894 * 218.38963 * 12 11 9 37 37 H 0.97000 * 119.99974 * 179.97438 * 17 16 14 38 38 H 1.09001 * 110.36296 * 265.28771 * 22 13 12 39 39 H 1.09003 * 110.36330 * 142.96930 * 22 13 12 40 40 H 1.09002 * 109.67626 * 307.74280 * 23 4 3 41 41 H 1.09004 * 109.67030 * 187.24585 * 23 4 3 42 42 H 1.08995 * 109.40030 * 71.20205 * 24 23 4 43 43 H 1.08996 * 109.40535 * 190.95280 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5956 1.1267 -0.4678 5 1 3.6107 0.8738 -1.5279 6 6 4.3478 2.4126 -0.2405 7 8 5.3124 2.4291 0.4943 8 7 3.9485 3.5442 -0.8539 9 6 4.6801 4.7942 -0.6335 10 1 5.7366 4.5989 -0.4495 11 6 4.4941 5.7657 -1.8289 12 6 4.6963 7.1522 -1.1821 13 7 4.4331 7.0052 0.2569 14 6 4.5238 8.0026 1.1907 15 1 4.3087 7.7924 2.2280 16 6 4.8923 9.2840 0.8042 17 7 5.1541 9.5403 -0.4600 18 14 5.0154 10.6447 2.0780 19 1 6.3935 10.6830 2.6298 20 1 4.7007 11.9488 1.4412 21 1 4.0498 10.3840 3.1757 22 6 4.0544 5.6065 0.5277 23 6 4.2492 -0.0013 0.3397 24 6 3.5839 -1.3239 -0.0490 25 6 2.0899 -1.1780 -0.0005 26 8 1.4159 -2.1854 0.0399 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5135 0.8902 29 1 -0.3634 0.5141 -0.8898 30 1 1.6270 1.9718 -0.6697 31 1 2.1430 1.6982 1.0097 32 1 3.1768 3.5311 -1.4414 33 1 5.2482 5.5837 -2.5947 34 1 3.4908 5.6771 -2.2453 35 1 5.7212 7.4886 -1.3391 36 1 3.9984 7.8687 -1.6153 37 1 5.4112 10.4358 -0.7301 38 1 2.9696 5.4997 0.5238 39 1 4.4651 5.2805 1.4833 40 1 4.1087 0.1810 1.4051 41 1 5.3144 -0.0457 0.1124 42 1 3.8880 -1.5992 -1.0588 43 1 3.8943 -2.1036 0.6465 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016345718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:10 Heat of formation + Delta-G solvation = -70.141980 kcal Electronic energy + Delta-G solvation = -24130.223578 eV Core-core repulsion = 20595.862732 eV Total energy + Delta-G solvation = -3534.360846 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.84107 -40.71132 -38.98079 -37.33157 -35.65025 -34.98182 -33.77757 -31.44501 -30.69105 -28.73607 -28.09731 -26.49340 -25.55607 -23.99510 -22.16164 -21.82909 -21.32900 -19.74678 -19.03062 -18.37831 -17.69348 -17.40925 -17.15150 -16.70550 -16.46838 -16.04060 -15.85399 -15.38797 -15.15079 -14.84250 -14.45635 -14.20266 -14.13704 -13.90572 -13.67459 -13.62033 -13.15847 -12.96232 -12.85055 -12.77519 -12.73543 -12.41293 -12.23349 -12.09204 -12.03280 -11.91774 -11.80304 -11.54367 -10.87273 -10.76038 -10.71349 -10.07616 -9.79933 -8.90606 -7.86254 -5.21858 1.46079 1.47951 1.53162 1.56171 1.57057 1.96908 2.14551 2.50627 3.32585 3.42945 3.53533 3.63679 3.68887 3.71639 3.89820 4.08611 4.20339 4.24690 4.27874 4.35958 4.45466 4.53548 4.63702 4.64549 4.74221 4.76578 4.88409 4.91157 4.98281 5.01140 5.02818 5.13002 5.20737 5.35068 5.43698 5.56051 5.66785 5.75726 6.19646 6.35185 6.59600 7.07588 7.10082 7.27904 7.76245 8.38663 9.23639 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.030206 B = 0.002971 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.757492 B = 9422.987050 C = 9600.836000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.603 5.603 3 C 0.123 3.877 4 C -0.111 4.111 5 H 0.138 0.862 6 C 0.524 3.476 7 O -0.576 6.576 8 N -0.699 5.699 9 C 0.146 3.854 10 H 0.075 0.925 11 C -0.128 4.128 12 C 0.182 3.818 13 N -0.627 5.627 14 C -0.246 4.246 15 H 0.078 0.922 16 C -0.063 4.063 17 N -0.948 5.948 18 Si 0.977 3.023 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.270 1.270 22 C 0.128 3.872 23 C -0.101 4.101 24 C -0.124 4.124 25 C 0.509 3.491 26 O -0.600 6.600 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.418 0.582 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.011 0.989 36 H 0.016 0.984 37 H 0.248 0.752 38 H 0.036 0.964 39 H 0.024 0.976 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 -19.127 -4.967 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.334 5.334 3 C 0.000 4.000 4 C -0.133 4.133 5 H 0.156 0.844 6 C 0.310 3.690 7 O -0.454 6.454 8 N -0.350 5.350 9 C 0.039 3.961 10 H 0.093 0.907 11 C -0.166 4.166 12 C 0.057 3.943 13 N -0.354 5.354 14 C -0.375 4.375 15 H 0.096 0.904 16 C -0.256 4.256 17 N -0.597 5.597 18 Si 0.805 3.195 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.195 1.195 22 C 0.001 3.999 23 C -0.139 4.139 24 C -0.163 4.163 25 C 0.299 3.701 26 O -0.483 6.483 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.256 0.744 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.029 0.971 36 H 0.034 0.966 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.141 0.859 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.914 -19.396 -4.416 21.060 hybrid contribution -0.020 1.286 0.573 1.408 sum -6.933 -18.110 -3.843 19.769 Atomic orbital electron populations 1.21909 0.78540 1.04035 1.03283 1.47222 1.08280 1.05852 1.72065 1.21441 0.90728 0.84581 1.03235 1.21620 0.94508 0.92290 1.04877 0.84428 1.20729 0.84088 0.85297 0.78844 1.90740 1.29809 1.86333 1.38560 1.45781 1.33280 1.07169 1.48816 1.21783 0.95907 0.82962 0.95424 0.90704 1.22990 1.03483 0.93624 0.96513 1.20951 0.97653 0.92911 0.82780 1.44679 1.80667 1.05332 1.04710 1.19417 1.39448 0.88845 0.89748 0.90433 1.25616 1.01886 0.99666 0.98418 1.70154 1.53565 1.20296 1.15694 0.85102 0.77793 0.78401 0.78174 1.21476 1.21757 1.19456 1.21955 0.97116 0.84231 0.96558 1.21449 1.01055 0.91447 0.99968 1.21661 0.88698 0.99479 1.06493 1.20738 0.92064 0.82519 0.74747 1.90688 1.67463 1.37181 1.52935 0.90839 0.91011 0.89622 0.86806 0.91383 0.74370 0.89399 0.88752 0.97112 0.96578 0.94273 0.94592 0.95741 0.91757 0.89348 0.85910 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.85 10.47 127.77 1.34 2.19 16 2 N -0.60 -9.18 3.21 -851.46 -2.73 -11.92 16 3 C 0.12 1.46 5.57 86.51 0.48 1.94 16 4 C -0.11 -1.48 2.60 -11.43 -0.03 -1.51 16 5 H 0.14 1.08 8.12 -2.39 -0.02 1.06 16 6 C 0.52 11.46 7.13 87.66 0.63 12.08 16 7 O -0.58 -18.56 15.54 -3.00 -0.05 -18.61 16 8 N -0.70 -14.42 5.11 -435.98 -2.23 -16.65 16 9 C 0.15 4.58 3.42 46.38 0.16 4.74 16 10 H 0.07 2.76 7.54 -2.39 -0.02 2.74 16 11 C -0.13 -3.96 6.60 31.79 0.21 -3.75 16 12 C 0.18 8.52 5.37 86.73 0.47 8.99 16 13 N -0.63 -31.73 3.39 -692.00 -2.35 -34.07 16 14 C -0.25 -13.82 10.28 84.03 0.86 -12.95 16 15 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 16 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 17 N -0.95 -56.17 10.31 21.65 0.22 -55.94 16 18 Si 0.98 45.63 29.55 68.60 2.03 47.65 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 C 0.13 5.09 6.93 86.85 0.60 5.69 16 23 C -0.10 -1.52 4.71 30.73 0.14 -1.37 16 24 C -0.12 -1.68 6.03 29.71 0.18 -1.50 16 25 C 0.51 9.86 7.47 87.72 0.66 10.51 16 26 O -0.60 -16.54 15.95 -3.04 -0.05 -16.59 16 27 H 0.07 1.30 6.59 -2.38 -0.02 1.28 16 28 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 0.74 7.85 -2.39 -0.02 0.72 16 31 H 0.07 0.97 8.11 -2.39 -0.02 0.95 16 32 H 0.42 5.32 8.25 -92.71 -0.76 4.55 16 33 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.09 2.35 8.00 -2.39 -0.02 2.33 16 35 H 0.01 0.57 7.38 -2.39 -0.02 0.55 16 36 H 0.02 0.83 7.50 -2.38 -0.02 0.82 16 37 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 41 H 0.09 1.40 7.90 -2.38 -0.02 1.38 16 42 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -78.05 344.97 1.25 -76.80 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.24 Total: 7.34 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 6.16 Total: 21.98 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -7.09 Total: -118.58 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.10 Total: -35.19 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -78.05 1.25 -76.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016345718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.659 kcal (2) G-P(sol) polarization free energy of solvation -78.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds