Wall clock time and date at job start Tue Mar 31 2020 03:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45758 * 117.94153 * 2 1 4 4 C 1.52921 * 110.31891 * 198.96869 * 3 2 1 5 5 H 1.09004 * 109.59806 * 69.27210 * 4 3 2 6 6 C 1.50699 * 109.60236 * 189.59210 * 4 3 2 7 7 O 1.21280 * 120.00283 * 120.00397 * 6 4 3 8 8 N 1.34776 * 120.00286 * 300.00029 * 6 4 3 9 9 C 1.46496 * 120.00259 * 180.02562 * 8 6 4 10 10 H 1.08997 * 110.88577 * 328.87489 * 9 8 6 11 11 C 1.55164 * 111.00321 * 205.00222 * 9 8 6 12 12 C 1.54320 * 102.94079 * 277.42499 * 11 9 8 13 13 N 1.47025 * 107.27392 * 337.80718 * 12 11 9 14 14 C 1.36940 * 125.64861 * 178.98531 * 13 12 11 15 15 H 1.08000 * 119.99596 * 179.97438 * 14 13 12 16 16 C 1.38805 * 120.00152 * 359.97438 * 14 13 12 17 17 N 1.31626 * 120.00143 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00011 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47063 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47151 * 120.00458 * 18 16 14 21 21 H 1.48506 * 109.47045 * 240.00404 * 18 16 14 22 22 C 1.47430 * 108.70104 * 358.94254 * 13 12 11 23 23 C 1.53336 * 108.67709 * 309.34996 * 4 3 2 24 24 C 1.53073 * 108.42581 * 67.53096 * 23 4 3 25 25 C 1.32957 * 117.64571 * 180.02562 * 2 1 3 26 26 O 1.21276 * 118.35755 * 357.79647 * 25 2 1 27 27 H 1.08999 * 109.47344 * 90.00389 * 1 2 3 28 28 H 1.09003 * 109.46913 * 210.00051 * 1 2 3 29 29 H 1.08997 * 109.47279 * 329.99813 * 1 2 3 30 30 H 1.09002 * 109.30363 * 78.76105 * 3 2 1 31 31 H 1.08998 * 109.30258 * 319.17671 * 3 2 1 32 32 H 0.97005 * 119.99703 * 0.02562 * 8 6 4 33 33 H 1.08995 * 110.72319 * 35.78898 * 11 9 8 34 34 H 1.09001 * 110.71702 * 158.88381 * 11 9 8 35 35 H 1.09004 * 109.88477 * 97.22726 * 12 11 9 36 36 H 1.08998 * 109.88470 * 218.39285 * 12 11 9 37 37 H 0.96999 * 119.99852 * 180.02562 * 17 16 14 38 38 H 1.09000 * 110.36198 * 265.28975 * 22 13 12 39 39 H 1.09001 * 110.36499 * 142.96624 * 22 13 12 40 40 H 1.08998 * 109.67812 * 187.26136 * 23 4 3 41 41 H 1.08998 * 109.67685 * 307.76219 * 23 4 3 42 42 H 1.08999 * 109.40436 * 71.22797 * 24 23 4 43 43 H 1.09001 * 109.40329 * 191.05831 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5949 1.1213 -0.4661 5 1 3.6108 0.8708 -1.5269 6 6 4.3502 2.4053 -0.2385 7 8 5.3228 2.4166 0.4859 8 7 3.9450 3.5413 -0.8401 9 6 4.6795 4.7894 -0.6192 10 1 5.1211 4.8093 0.3771 11 6 3.7638 6.0213 -0.8464 12 6 3.8019 6.2024 -2.3784 13 7 5.0266 5.5505 -2.8648 14 6 5.4221 5.4698 -4.1734 15 1 6.3433 4.9675 -4.4291 16 6 4.6389 6.0336 -5.1711 17 7 3.5164 6.6463 -4.8595 18 14 5.1787 5.9243 -6.9561 19 1 6.4678 5.1918 -7.0393 20 1 4.1465 5.2017 -7.7420 21 1 5.3513 7.2930 -7.5058 22 6 5.7590 4.9989 -1.7103 23 6 4.2446 -0.0080 0.3425 24 6 3.5754 -1.3285 -0.0466 25 6 2.0820 -1.1778 -0.0005 26 8 1.4046 -2.1829 0.0401 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 2.1397 1.6999 1.0090 31 1 1.6291 1.9707 -0.6725 32 1 3.1668 3.5324 -1.4192 33 1 2.7487 5.8149 -0.5075 34 1 4.1665 6.8993 -0.3414 35 1 2.9277 5.7324 -2.8291 36 1 3.8236 7.2637 -2.6259 37 1 2.9689 7.0399 -5.5568 38 1 6.5135 5.7065 -1.3666 39 1 6.2216 4.0478 -1.9738 40 1 5.3097 -0.0557 0.1161 41 1 4.1038 0.1754 1.4077 42 1 3.8801 -1.6052 -1.0559 43 1 3.8812 -2.1087 0.6505 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016345720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:15 Heat of formation + Delta-G solvation = -69.337181 kcal Electronic energy + Delta-G solvation = -24537.598500 eV Core-core repulsion = 21003.272553 eV Total energy + Delta-G solvation = -3534.325947 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.86288 -40.73019 -38.95920 -37.32514 -35.43139 -34.98863 -33.65102 -31.41007 -30.66830 -28.83968 -28.11676 -26.47351 -25.62423 -24.10144 -22.06877 -21.70118 -21.17696 -19.76715 -18.97740 -18.34863 -17.73017 -17.34437 -17.12947 -16.65816 -16.53488 -16.07971 -15.60732 -15.49356 -15.16778 -14.84318 -14.61949 -14.33142 -13.88541 -13.81515 -13.60429 -13.53306 -13.23637 -12.90007 -12.84410 -12.82101 -12.73753 -12.29980 -12.22919 -12.06518 -11.98361 -11.92330 -11.78943 -11.55442 -10.83605 -10.77995 -10.70821 -10.03566 -9.81987 -8.83825 -7.84214 -5.17596 1.46191 1.47895 1.54034 1.56886 1.59471 1.96271 2.24748 2.50042 3.35219 3.46151 3.52402 3.64058 3.69833 3.72103 3.86167 4.11986 4.22230 4.23503 4.34529 4.37113 4.41695 4.52203 4.61678 4.71921 4.73065 4.79387 4.85774 4.94284 4.94868 5.02384 5.04459 5.09314 5.18413 5.32968 5.47262 5.60831 5.71745 5.80641 6.22279 6.35036 6.60808 7.06785 7.14072 7.25463 7.79814 8.43099 9.25688 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.003851 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.511684 B = 7269.634960 C = 7730.565155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.602 5.602 3 C 0.126 3.874 4 C -0.119 4.119 5 H 0.115 0.885 6 C 0.528 3.472 7 O -0.572 6.572 8 N -0.699 5.699 9 C 0.142 3.858 10 H 0.105 0.895 11 C -0.133 4.133 12 C 0.183 3.817 13 N -0.621 5.621 14 C -0.239 4.239 15 H 0.073 0.927 16 C -0.057 4.057 17 N -0.945 5.945 18 Si 0.970 3.030 19 H -0.272 1.272 20 H -0.291 1.291 21 H -0.294 1.294 22 C 0.121 3.879 23 C -0.095 4.095 24 C -0.127 4.127 25 C 0.508 3.492 26 O -0.600 6.600 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.409 0.591 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.005 0.995 37 H 0.247 0.753 38 H 0.028 0.972 39 H 0.030 0.970 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.615 -9.645 11.987 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.333 5.333 3 C 0.004 3.996 4 C -0.141 4.141 5 H 0.133 0.867 6 C 0.314 3.686 7 O -0.451 6.451 8 N -0.349 5.349 9 C 0.036 3.964 10 H 0.123 0.877 11 C -0.172 4.172 12 C 0.058 3.942 13 N -0.348 5.348 14 C -0.368 4.368 15 H 0.091 0.909 16 C -0.251 4.251 17 N -0.594 5.594 18 Si 0.799 3.201 19 H -0.197 1.197 20 H -0.218 1.218 21 H -0.221 1.221 22 C -0.006 4.006 23 C -0.133 4.133 24 C -0.167 4.167 25 C 0.298 3.702 26 O -0.483 6.483 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.244 0.756 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.024 0.976 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.131 0.869 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.314 -10.047 12.332 16.481 hybrid contribution -0.016 0.357 -1.705 1.742 sum -4.329 -9.690 10.627 15.019 Atomic orbital electron populations 1.21856 0.78469 1.04017 1.02791 1.47181 1.08393 1.05925 1.71784 1.21450 0.90283 0.84404 1.03508 1.21621 0.95259 0.93238 1.03941 0.86670 1.20508 0.84245 0.84974 0.78866 1.90686 1.28744 1.86056 1.39636 1.45872 1.32230 1.08030 1.48785 1.21941 0.92682 0.83627 0.98179 0.87682 1.23071 1.00680 0.97002 0.96428 1.20969 0.88355 0.95052 0.89836 1.44726 1.23278 1.65195 1.01600 1.19374 1.04599 1.30010 0.82799 0.90893 1.25460 0.97474 1.00700 1.01416 1.70143 1.14940 1.42600 1.31738 0.85135 0.77499 0.76861 0.80578 1.19660 1.21764 1.22132 1.22081 0.94309 0.95915 0.88250 1.21412 1.00749 0.90951 1.00208 1.21682 0.89022 0.99834 1.06117 1.20571 0.92042 0.82519 0.75049 1.90690 1.67345 1.37328 1.52921 0.91991 0.91531 0.88435 0.89728 0.87873 0.75559 0.88454 0.89466 0.95911 0.97633 0.94402 0.95389 0.95186 0.89651 0.90557 0.86905 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 10.23 127.77 1.31 2.43 16 2 N -0.60 -11.02 3.20 -852.18 -2.73 -13.74 16 3 C 0.13 1.88 5.48 86.49 0.47 2.35 16 4 C -0.12 -2.17 2.60 -11.45 -0.03 -2.20 16 5 H 0.12 2.03 8.13 -2.38 -0.02 2.01 16 6 C 0.53 13.20 7.14 87.66 0.63 13.82 16 7 O -0.57 -18.13 15.53 -3.03 -0.05 -18.17 16 8 N -0.70 -18.18 5.09 -435.97 -2.22 -20.40 16 9 C 0.14 4.28 3.43 46.39 0.16 4.44 16 10 H 0.11 2.99 7.54 -2.39 -0.02 2.98 16 11 C -0.13 -4.00 6.55 31.78 0.21 -3.79 16 12 C 0.18 7.99 5.36 86.73 0.47 8.46 16 13 N -0.62 -29.72 3.40 -691.98 -2.35 -32.07 16 14 C -0.24 -12.87 10.28 84.03 0.86 -12.01 16 15 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 16 C -0.06 -3.11 5.49 84.86 0.47 -2.64 16 17 N -0.95 -53.59 10.31 21.65 0.22 -53.37 16 18 Si 0.97 44.41 29.55 68.60 2.03 46.44 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 C 0.12 4.74 6.93 86.85 0.60 5.35 16 23 C -0.10 -1.67 4.72 30.73 0.14 -1.53 16 24 C -0.13 -2.16 6.03 29.71 0.18 -1.98 16 25 C 0.51 11.46 7.46 87.77 0.65 12.12 16 26 O -0.60 -18.26 16.15 -3.02 -0.05 -18.31 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.28 7.11 -2.39 -0.02 1.26 16 29 H 0.10 1.01 8.01 -2.39 -0.02 0.99 16 30 H 0.08 1.15 8.11 -2.39 -0.02 1.13 16 31 H 0.10 1.23 7.80 -2.39 -0.02 1.21 16 32 H 0.41 9.87 8.29 -92.70 -0.77 9.10 16 33 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.40 16 35 H 0.02 1.09 7.38 -2.38 -0.02 1.07 16 36 H 0.01 0.28 7.50 -2.39 -0.02 0.26 16 37 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 38 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.62 7.89 -2.39 -0.02 1.60 16 41 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16 42 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -71.55 345.27 1.21 -70.33 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.24 Total: 14.48 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: 6.12 Total: 24.81 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -7.07 Total: -119.58 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.10 Total: -36.48 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -71.55 1.21 -70.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016345720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.998 kcal (2) G-P(sol) polarization free energy of solvation -71.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds