Wall clock time and date at job start Tue Mar 31 2020 03:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34415 * 124.34746 * 2 1 4 4 O 1.21279 * 124.94734 * 359.57029 * 3 2 1 5 5 C 1.51283 * 110.11321 * 179.56617 * 3 2 1 6 6 C 1.54626 * 104.19824 * 343.74936 * 5 3 2 7 7 C 1.46764 * 124.34711 * 179.97438 * 2 1 3 8 8 H 1.09006 * 110.31533 * 78.00386 * 7 2 1 9 9 C 1.52994 * 110.24977 * 316.03993 * 7 2 1 10 10 C 1.50695 * 109.47197 * 178.11921 * 9 7 2 11 11 O 1.21279 * 120.00399 * 354.20916 * 10 9 7 12 12 N 1.34787 * 120.00091 * 174.20452 * 10 9 7 13 13 C 1.46497 * 119.99914 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.85246 * 23.80102 * 13 12 10 15 15 C 1.53774 * 113.61316 * 155.00157 * 13 12 10 16 16 C 1.53780 * 87.08293 * 89.11305 * 15 13 12 17 17 H 1.09000 * 113.61446 * 140.06191 * 16 15 13 18 18 N 1.46494 * 113.61515 * 270.88282 * 16 15 13 19 19 C 1.36937 * 120.00134 * 203.46895 * 18 16 15 20 20 H 1.07998 * 120.00342 * 0.02562 * 19 18 16 21 21 C 1.38820 * 119.99722 * 180.27530 * 19 18 16 22 22 N 1.31614 * 119.99583 * 179.73008 * 21 19 18 23 23 Si 1.86792 * 120.00275 * 359.72427 * 21 19 18 24 24 H 1.48505 * 109.47168 * 89.99821 * 23 21 19 25 25 H 1.48500 * 109.47537 * 209.99953 * 23 21 19 26 26 H 1.48498 * 109.47147 * 330.00222 * 23 21 19 27 27 C 1.53784 * 87.17336 * 25.47483 * 16 15 13 28 28 H 1.08995 * 109.47301 * 274.98221 * 1 2 3 29 29 H 1.09004 * 109.46876 * 34.98293 * 1 2 3 30 30 H 1.09002 * 109.46836 * 154.98101 * 1 2 3 31 31 H 1.08998 * 110.48984 * 225.06453 * 5 3 2 32 32 H 1.09008 * 110.59628 * 102.48436 * 5 3 2 33 33 H 1.08996 * 110.97075 * 266.67660 * 6 5 3 34 34 H 1.09005 * 110.97292 * 142.91403 * 6 5 3 35 35 H 1.09003 * 109.46808 * 58.12284 * 9 7 2 36 36 H 1.09000 * 109.47329 * 298.12431 * 9 7 2 37 37 H 0.96994 * 119.99284 * 0.02562 * 12 10 9 38 38 H 1.08999 * 113.61871 * 334.56256 * 15 13 12 39 39 H 1.09001 * 113.61409 * 203.66257 * 15 13 12 40 40 H 0.97006 * 119.99893 * 23.47026 * 18 16 15 41 41 H 0.97001 * 120.00356 * 180.02562 * 22 21 19 42 42 H 1.09003 * 113.61242 * 89.07507 * 27 16 15 43 43 H 1.08998 * 113.61404 * 219.97865 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7947 2.2442 -0.0075 5 6 3.6898 0.7378 0.0108 6 6 3.7009 -0.7486 0.4367 7 6 2.2931 -1.2117 0.0005 8 1 2.3312 -1.6445 -0.9992 9 6 1.7388 -2.2314 0.9974 10 6 2.5738 -3.4850 0.9504 11 8 3.4529 -3.5974 0.1224 12 7 2.3438 -4.4813 1.8285 13 6 3.1560 -5.6997 1.7832 14 1 4.1302 -5.5420 1.3204 15 6 3.2255 -6.4441 3.1269 16 6 1.9648 -7.2039 2.6817 17 1 1.9767 -8.2616 2.9449 18 7 0.7151 -6.5382 3.0572 19 6 -0.4391 -7.2655 3.1763 20 1 -0.4280 -8.3298 2.9938 21 6 -1.6245 -6.6336 3.5266 22 7 -2.7348 -7.3317 3.6359 23 14 -1.6436 -4.7928 3.8430 24 1 -1.9261 -4.0753 2.5738 25 1 -2.6984 -4.4724 4.8380 26 1 -0.3216 -4.3671 4.3685 27 6 2.4005 -6.9247 1.2335 28 1 -0.3633 0.0892 1.0237 29 1 -0.3633 0.8420 -0.5892 30 1 -0.3633 -0.9313 -0.4346 31 1 4.2324 1.3461 0.7344 32 1 4.1220 0.8531 -0.9833 33 1 3.8264 -0.8444 1.5151 34 1 4.4755 -1.3011 -0.0953 35 1 0.7081 -2.4715 0.7363 36 1 1.7705 -1.8112 2.0026 37 1 1.6406 -4.3915 2.4905 38 1 3.0646 -5.8002 3.9916 39 1 4.1051 -7.0796 3.2291 40 1 0.7051 -5.5822 3.2215 41 1 -3.5633 -6.8903 3.8803 42 1 3.0551 -7.6914 0.8189 43 1 1.5741 -6.6685 0.5706 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022531551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:12 Heat of formation + Delta-G solvation = -51.076831 kcal Electronic energy + Delta-G solvation = -24402.845763 eV Core-core repulsion = 20869.311644 eV Total energy + Delta-G solvation = -3533.534119 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.81460 -41.04937 -39.46396 -37.67261 -35.55027 -34.21206 -33.73553 -32.64223 -31.87143 -27.60865 -26.88289 -26.52297 -25.92344 -24.04351 -22.69903 -21.42559 -20.74631 -20.37706 -19.44893 -18.51159 -17.54497 -17.48036 -16.89084 -16.64408 -16.39963 -16.15850 -15.91958 -15.49458 -14.96223 -14.82640 -14.77359 -14.67117 -14.18015 -13.85928 -13.79557 -13.57943 -13.39890 -13.25397 -13.15723 -12.87831 -12.83685 -12.57799 -12.09909 -12.00775 -11.96397 -11.84880 -11.71536 -11.15982 -11.05371 -10.88046 -10.80634 -9.97921 -9.83534 -9.32402 -8.02901 -5.37935 1.29996 1.38749 1.46510 1.47190 1.58107 1.81704 2.27529 2.47003 3.27331 3.28591 3.44369 3.48531 3.65572 3.76547 3.80006 3.92063 4.02828 4.17078 4.28364 4.31817 4.33610 4.36636 4.45105 4.56482 4.76349 4.80594 4.83527 4.85349 4.91973 4.97419 5.05548 5.08742 5.15615 5.23715 5.33471 5.43358 5.64699 5.80596 6.02217 6.21267 6.47261 7.05442 7.05960 7.17342 7.80831 7.98368 9.18505 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015738 B = 0.004547 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.695494 B = 6156.482290 C = 7574.914366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.617 5.617 3 C 0.507 3.493 4 O -0.583 6.583 5 C -0.146 4.146 6 C -0.115 4.115 7 C 0.150 3.850 8 H 0.090 0.910 9 C -0.154 4.154 10 C 0.524 3.476 11 O -0.561 6.561 12 N -0.709 5.709 13 C 0.125 3.875 14 H 0.108 0.892 15 C -0.144 4.144 16 C 0.144 3.856 17 H 0.063 0.937 18 N -0.730 5.730 19 C -0.235 4.235 20 H 0.057 0.943 21 C -0.064 4.064 22 N -0.984 5.984 23 Si 0.942 3.058 24 H -0.267 1.267 25 H -0.299 1.299 26 H -0.242 1.242 27 C -0.178 4.178 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.398 0.602 38 H 0.072 0.928 39 H 0.128 0.872 40 H 0.362 0.638 41 H 0.257 0.743 42 H 0.106 0.894 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.586 12.182 -5.185 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.350 5.350 3 C 0.296 3.704 4 O -0.464 6.464 5 C -0.186 4.186 6 C -0.153 4.153 7 C 0.046 3.954 8 H 0.108 0.892 9 C -0.194 4.194 10 C 0.311 3.689 11 O -0.440 6.440 12 N -0.361 5.361 13 C 0.020 3.980 14 H 0.126 0.874 15 C -0.183 4.183 16 C 0.035 3.965 17 H 0.082 0.918 18 N -0.373 5.373 19 C -0.365 4.365 20 H 0.075 0.925 21 C -0.255 4.255 22 N -0.634 5.634 23 Si 0.768 3.232 24 H -0.192 1.192 25 H -0.226 1.226 26 H -0.166 1.166 27 C -0.219 4.219 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.234 0.766 38 H 0.091 0.909 39 H 0.146 0.854 40 H 0.197 0.803 41 H 0.066 0.934 42 H 0.124 0.876 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.742 12.491 -5.762 20.906 hybrid contribution -1.501 0.571 0.520 1.688 sum 14.241 13.063 -5.243 20.023 Atomic orbital electron populations 1.21721 0.77664 1.03748 1.02650 1.48404 1.07050 1.07199 1.72317 1.21541 0.91095 0.83642 0.74086 1.90689 1.79953 1.22830 1.52952 1.22393 0.92033 0.98014 1.06155 1.22661 0.95494 0.93996 1.03105 1.21449 0.90623 0.83708 0.99595 0.89164 1.22044 1.01061 0.93036 1.03299 1.20570 0.83712 0.84537 0.80080 1.90665 1.34175 1.81666 1.37497 1.45979 1.37386 1.17149 1.35600 1.21902 0.94761 0.83207 0.98102 0.87423 1.23762 0.99200 0.99203 0.96143 1.21487 0.84916 0.96305 0.93826 0.91835 1.42461 1.05121 1.06373 1.83358 1.19052 0.86589 0.92772 1.38134 0.92545 1.25539 0.94926 1.02777 1.02295 1.69885 0.99900 1.37133 1.56473 0.85619 0.78507 0.80787 0.78318 1.19225 1.22636 1.16574 1.24224 1.00060 0.98662 0.99004 0.91800 0.91441 0.89105 0.86738 0.86223 0.89440 0.87757 0.87505 0.86642 0.76612 0.90913 0.85412 0.80317 0.93371 0.87607 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.52 10.07 127.77 1.29 2.80 16 2 N -0.62 -12.30 3.18 -818.88 -2.61 -14.91 16 3 C 0.51 11.74 8.02 87.90 0.71 12.45 16 4 O -0.58 -18.52 17.66 -3.03 -0.05 -18.58 16 5 C -0.15 -2.19 6.86 30.59 0.21 -1.98 16 6 C -0.11 -1.69 5.75 31.65 0.18 -1.50 16 7 C 0.15 2.64 2.94 45.44 0.13 2.77 16 8 H 0.09 1.70 7.93 -2.38 -0.02 1.68 16 9 C -0.15 -2.81 4.98 29.84 0.15 -2.66 16 10 C 0.52 12.34 7.54 87.65 0.66 13.00 16 11 O -0.56 -15.37 14.53 -3.03 -0.04 -15.41 16 12 N -0.71 -17.84 5.14 -439.60 -2.26 -20.09 16 13 C 0.13 3.12 4.33 45.61 0.20 3.31 16 14 H 0.11 2.52 7.46 -2.39 -0.02 2.50 16 15 C -0.14 -3.38 7.58 31.12 0.24 -3.15 16 16 C 0.14 4.74 4.55 45.52 0.21 4.94 16 17 H 0.06 2.20 8.11 -2.39 -0.02 2.18 16 18 N -0.73 -30.20 4.97 -320.45 -1.59 -31.79 16 19 C -0.23 -12.53 10.45 84.04 0.88 -11.65 16 20 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 21 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 22 N -0.98 -60.80 13.97 21.65 0.30 -60.50 16 23 Si 0.94 40.68 27.73 68.60 1.90 42.59 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 26 H -0.24 -8.80 6.52 99.48 0.65 -8.16 16 27 C -0.18 -5.17 7.70 31.22 0.24 -4.93 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.31 8.03 -2.38 -0.02 1.29 16 30 H 0.09 1.36 7.64 -2.39 -0.02 1.34 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.09 1.17 7.86 -2.39 -0.02 1.15 16 34 H 0.10 1.54 7.69 -2.38 -0.02 1.52 16 35 H 0.11 1.91 7.28 -2.39 -0.02 1.89 16 36 H 0.12 1.76 8.07 -2.39 -0.02 1.74 16 37 H 0.40 10.34 6.15 -92.71 -0.57 9.77 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.36 13.73 3.22 -92.70 -0.30 13.43 16 41 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -72.61 347.04 1.30 -71.31 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: 0.10 Total: 37.06 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 5.55 Total: 10.32 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -6.15 Total: -127.29 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.10 Total: -33.99 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.90 Total: 42.59 kcal Total: -72.61 1.30 -71.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022531551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.236 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds