Wall clock time and date at job start Tue Mar 31 2020 03:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99951 * 2 1 4 4 H 1.07999 * 119.99902 * 203.71673 * 3 2 1 5 5 C 1.38811 * 120.00138 * 23.72661 * 3 2 1 6 6 N 1.31621 * 120.00002 * 15.16085 * 5 3 2 7 7 Si 1.86796 * 119.99948 * 195.15920 * 5 3 2 8 8 H 1.48505 * 109.47053 * 59.99849 * 7 5 3 9 9 H 1.48501 * 109.47198 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47452 * 299.99773 * 7 5 3 11 11 C 1.46500 * 119.99652 * 179.97438 * 2 1 3 12 12 H 1.08999 * 109.52069 * 180.08347 * 11 2 1 13 13 C 1.53041 * 109.49195 * 60.00735 * 11 2 1 14 14 C 1.53043 * 109.53699 * 178.67627 * 13 11 2 15 15 C 1.53198 * 109.30786 * 61.36442 * 14 13 11 16 16 N 1.46922 * 108.89431 * 305.29218 * 15 14 13 17 17 C 1.34779 * 120.63338 * 233.67824 * 16 15 14 18 18 O 1.21283 * 119.99788 * 354.31927 * 17 16 15 19 19 C 1.50693 * 119.99924 * 174.31270 * 17 16 15 20 20 H 1.08998 * 110.44059 * 315.12048 * 19 17 16 21 21 C 1.54632 * 110.48664 * 192.43935 * 19 17 16 22 22 C 1.54483 * 101.76529 * 266.12401 * 21 19 17 23 23 N 1.46768 * 105.47033 * 334.57861 * 22 21 19 24 24 C 1.34422 * 111.30121 * 17.02155 * 23 22 21 25 25 O 1.21278 * 124.94186 * 179.55521 * 24 23 22 26 26 C 1.47208 * 118.55543 * 53.54175 * 16 15 14 27 27 H 1.08997 * 109.47479 * 275.26544 * 1 2 3 28 28 H 1.09007 * 109.46932 * 35.26224 * 1 2 3 29 29 H 1.08997 * 109.47113 * 155.26437 * 1 2 3 30 30 H 0.97002 * 119.99873 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.46226 * 58.66069 * 13 11 2 32 32 H 1.08995 * 109.46189 * 298.69931 * 13 11 2 33 33 H 1.09003 * 109.49838 * 301.41879 * 14 13 11 34 34 H 1.08998 * 109.52828 * 181.32943 * 14 13 11 35 35 H 1.08998 * 109.58863 * 65.15478 * 15 14 13 36 36 H 1.09000 * 109.58589 * 185.43246 * 15 14 13 37 37 H 1.09007 * 110.97031 * 24.23710 * 21 19 17 38 38 H 1.08999 * 110.97544 * 148.00082 * 21 19 17 39 39 H 1.09002 * 110.24545 * 215.58747 * 22 21 19 40 40 H 1.08993 * 110.25097 * 93.58308 * 22 21 19 41 41 H 0.96995 * 124.34934 * 197.03931 * 23 22 21 42 42 H 1.08991 * 109.53291 * 186.67018 * 26 16 15 43 43 H 1.09005 * 109.67512 * 66.36196 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1613 1.2254 -0.3762 5 6 1.5437 2.3373 0.4837 6 7 0.4477 2.2498 1.2073 7 14 2.2836 4.0107 0.1077 8 1 2.3219 4.2160 -1.3626 9 1 1.4533 5.0710 0.7336 10 1 3.6634 4.0757 0.6527 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0706 0.0020 13 6 1.8282 -2.0721 -1.2486 14 6 2.6175 -3.3832 -1.2658 15 6 2.2495 -4.2123 -0.0313 16 7 2.4659 -3.3967 1.1714 17 6 3.2374 -3.8503 2.1792 18 8 3.6763 -4.9804 2.1454 19 6 3.5546 -2.9533 3.3478 20 1 3.8319 -1.9584 2.9997 21 6 4.6859 -3.5638 4.2072 22 6 3.8853 -4.3336 5.2810 23 7 2.5883 -3.6520 5.3658 24 6 2.3740 -2.8745 4.2905 25 8 1.3787 -2.2073 4.1029 26 6 1.8247 -2.0739 1.2493 27 1 -0.3634 0.0943 1.0233 28 1 -0.3633 0.8392 -0.5933 29 1 -0.3633 -0.9333 -0.4300 30 1 0.0244 3.0544 1.5456 31 1 2.0698 -1.4912 -2.1386 32 1 0.7605 -2.2912 -1.2370 33 1 3.6854 -3.1651 -1.2524 34 1 2.3721 -3.9445 -2.1673 35 1 1.2019 -4.5080 -0.0887 36 1 2.8782 -5.1016 0.0123 37 1 5.3006 -4.2436 3.6170 38 1 5.2961 -2.7828 4.6608 39 1 4.3996 -4.2864 6.2409 40 1 3.7471 -5.3711 4.9769 41 1 1.9658 -3.7499 6.1032 42 1 2.1749 -1.5510 2.1392 43 1 0.7423 -2.1930 1.2976 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027522789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:52 Heat of formation + Delta-G solvation = -40.280291 kcal Electronic energy + Delta-G solvation = -25502.723120 eV Core-core repulsion = 21969.657175 eV Total energy + Delta-G solvation = -3533.065946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.01702 -39.08581 -37.51070 -36.17507 -34.85201 -32.63564 -31.68752 -31.00354 -28.70372 -27.91523 -25.96020 -25.04579 -23.51257 -22.57792 -21.59080 -20.83373 -19.45491 -18.50797 -17.59258 -17.30348 -16.63325 -15.90543 -15.58330 -14.96710 -14.88118 -14.40484 -14.04032 -13.86199 -13.73794 -13.63423 -13.37437 -13.11111 -12.84122 -12.57124 -12.46849 -12.22438 -11.87404 -11.54082 -11.39084 -11.10472 -10.94912 -10.76576 -10.52520 -10.44945 -10.36427 -10.28310 -9.84738 -9.79764 -9.68782 -9.60929 -9.13854 -8.55835 -8.30476 -6.71096 -5.69408 -3.17094 2.39412 2.73560 3.19553 3.39505 3.40970 3.46028 3.46992 4.31464 4.33506 4.46919 4.61486 4.87255 5.03096 5.20945 5.26233 5.32431 5.38568 5.46665 5.50328 5.61508 5.72838 5.74275 5.78344 5.89116 5.97416 6.10303 6.19710 6.27846 6.39317 6.49656 6.70044 6.74398 6.82749 6.88852 6.94979 6.98912 7.38272 7.62683 7.78073 7.82977 8.22841 8.26272 8.42659 9.24823 9.88381 10.38316 11.34249 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.005453 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.174672 B = 5133.303207 C = 6133.521940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.588 5.588 3 C -0.260 4.260 4 H 0.067 0.933 5 C 0.006 3.994 6 N -0.899 5.899 7 Si 0.903 3.097 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.167 3.833 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.129 4.129 15 C 0.112 3.888 16 N -0.597 5.597 17 C 0.534 3.466 18 O -0.551 6.551 19 C -0.153 4.153 20 H 0.134 0.866 21 C -0.117 4.117 22 C 0.103 3.897 23 N -0.732 5.732 24 C 0.528 3.472 25 O -0.501 6.501 26 C 0.091 3.909 27 H 0.034 0.966 28 H 0.038 0.962 29 H 0.001 0.999 30 H 0.253 0.747 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.411 0.589 42 H 0.095 0.905 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.624 -13.800 4.388 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.310 5.310 3 C -0.390 4.390 4 H 0.085 0.915 5 C -0.193 4.193 6 N -0.543 5.543 7 Si 0.733 3.267 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.057 3.943 12 H 0.082 0.918 13 C -0.174 4.174 14 C -0.168 4.168 15 C -0.010 4.010 16 N -0.329 5.329 17 C 0.321 3.679 18 O -0.430 6.430 19 C -0.177 4.177 20 H 0.152 0.848 21 C -0.155 4.155 22 C -0.021 4.021 23 N -0.389 5.389 24 C 0.312 3.688 25 O -0.374 6.374 26 C -0.033 4.033 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.250 0.750 42 H 0.113 0.887 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.244 -13.830 4.231 15.753 hybrid contribution -0.025 1.066 0.254 1.096 sum 6.219 -12.764 4.485 14.890 Atomic orbital electron populations 1.20798 0.82691 0.95435 0.99678 1.43888 1.01764 0.99908 1.85437 1.19123 0.98995 0.85401 1.35484 0.91544 1.25038 0.98171 0.98474 0.97638 1.70076 1.21137 1.27458 1.35645 0.86376 0.78361 0.84024 0.77978 1.21097 1.21672 1.20957 1.20664 0.96369 0.86346 0.90896 0.91766 1.22103 0.99737 0.95032 1.00524 1.21894 1.00919 0.97156 0.96798 1.21595 1.01257 0.94245 0.83922 1.48368 1.47712 1.19593 1.17195 1.19694 0.78360 0.86900 0.82971 1.90632 1.54109 1.19079 1.79171 1.22154 0.97023 1.03255 0.95315 0.84847 1.22565 0.96295 1.00479 0.96119 1.22077 0.83271 0.97007 0.99764 1.46136 1.21864 1.47539 1.23363 1.20263 0.87324 0.78876 0.82345 1.90885 1.30196 1.40734 1.75573 1.22939 0.97881 0.80227 1.02255 0.94771 0.94345 0.98038 0.93651 0.91685 0.92264 0.91799 0.91250 0.91809 0.89568 0.87797 0.89306 0.90205 0.90553 0.74996 0.88724 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 7.93 59.85 0.47 4.38 16 2 N -0.59 -14.51 2.81 -173.35 -0.49 -14.99 16 3 C -0.26 -7.06 9.56 -15.06 -0.14 -7.20 16 4 H 0.07 1.76 7.84 -52.49 -0.41 1.34 16 5 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 6 N -0.90 -26.34 10.88 55.49 0.60 -25.74 16 7 Si 0.90 21.75 29.58 -169.99 -5.03 16.73 16 8 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.17 3.36 2.74 -67.81 -0.19 3.18 16 12 H 0.06 1.32 7.87 -51.93 -0.41 0.91 16 13 C -0.13 -2.28 5.13 -26.69 -0.14 -2.42 16 14 C -0.13 -1.78 6.08 -26.61 -0.16 -1.94 16 15 C 0.11 1.63 6.41 -3.71 -0.02 1.60 16 16 N -0.60 -9.93 2.98 -172.55 -0.51 -10.44 16 17 C 0.53 8.62 6.97 -10.99 -0.08 8.55 16 18 O -0.55 -9.41 15.09 5.55 0.08 -9.33 16 19 C -0.15 -2.17 2.35 -91.78 -0.22 -2.39 16 20 H 0.13 1.95 7.17 -51.93 -0.37 1.58 16 21 C -0.12 -1.18 6.41 -25.10 -0.16 -1.34 16 22 C 0.10 0.93 7.78 -3.12 -0.02 0.91 16 23 N -0.73 -8.45 6.24 -59.20 -0.37 -8.82 16 24 C 0.53 8.31 7.52 -10.86 -0.08 8.23 16 25 O -0.50 -10.13 15.91 5.56 0.09 -10.04 16 26 C 0.09 1.75 4.87 -3.56 -0.02 1.73 16 27 H 0.03 0.93 7.31 -51.93 -0.38 0.55 16 28 H 0.04 1.01 7.45 -51.93 -0.39 0.62 16 29 H 0.00 0.02 6.46 -51.93 -0.34 -0.31 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.22 7.04 -51.93 -0.37 0.85 16 37 H 0.10 1.07 7.18 -51.93 -0.37 0.69 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.41 3.97 8.96 -40.82 -0.37 3.60 16 42 H 0.09 1.99 4.42 -51.93 -0.23 1.76 16 43 H 0.07 1.42 7.51 -51.93 -0.39 1.03 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -32.84 334.85 -7.88 -40.72 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.46 Total: 3.51 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -0.84 Total: 13.36 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.77 Total: -60.00 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.17 Total: -19.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.84 -7.88 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027522789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.440 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds