Wall clock time and date at job start Tue Mar 31 2020 03:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36935 * 120.00181 * 2 1 4 4 H 1.08003 * 119.99759 * 204.48701 * 3 2 1 5 5 C 1.38808 * 120.00188 * 24.48312 * 3 2 1 6 6 N 1.31625 * 119.99770 * 11.80038 * 5 3 2 7 7 Si 1.86801 * 120.00442 * 191.79376 * 5 3 2 8 8 H 1.48504 * 109.46809 * 60.00183 * 7 5 3 9 9 H 1.48495 * 109.47382 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46875 * 300.00519 * 7 5 3 11 11 C 1.46502 * 119.99892 * 180.02562 * 2 1 3 12 12 H 1.08993 * 109.50005 * 179.97438 * 11 2 1 13 13 C 1.53040 * 109.49509 * 300.00063 * 11 2 1 14 14 C 1.53043 * 109.53805 * 181.35134 * 13 11 2 15 15 C 1.53194 * 109.30858 * 298.63231 * 14 13 11 16 16 N 1.46927 * 108.77784 * 54.63345 * 15 14 13 17 17 C 1.34776 * 120.62789 * 126.36723 * 16 15 14 18 18 O 1.21283 * 119.99932 * 185.00881 * 17 16 15 19 19 C 1.50696 * 120.00522 * 5.00688 * 17 16 15 20 20 C 1.50700 * 115.55180 * 279.43118 * 19 17 16 21 21 N 1.34773 * 119.99908 * 328.05861 * 20 19 17 22 22 O 1.21285 * 119.99738 * 148.06815 * 20 19 17 23 23 C 1.53004 * 117.49615 * 65.09456 * 19 17 16 24 24 C 1.53001 * 60.03229 * 107.47947 * 23 19 17 25 25 C 1.46924 * 118.73937 * 306.64701 * 16 15 14 26 26 H 1.09004 * 109.47188 * 267.59256 * 1 2 3 27 27 H 1.09004 * 109.47006 * 27.58395 * 1 2 3 28 28 H 1.08996 * 109.47465 * 147.58696 * 1 2 3 29 29 H 0.97004 * 119.99952 * 180.02562 * 6 5 3 30 30 H 1.09001 * 109.46333 * 61.32603 * 13 11 2 31 31 H 1.09005 * 109.45953 * 301.36551 * 13 11 2 32 32 H 1.09000 * 109.49987 * 178.68594 * 14 13 11 33 33 H 1.08999 * 109.50237 * 58.57891 * 14 13 11 34 34 H 1.09006 * 109.58962 * 294.84947 * 15 14 13 35 35 H 1.09001 * 109.70338 * 174.49155 * 15 14 13 36 36 H 0.97002 * 119.99763 * 5.48908 * 21 20 19 37 37 H 0.96995 * 120.00217 * 185.47699 * 21 20 19 38 38 H 1.08996 * 117.50318 * 214.97911 * 23 19 17 39 39 H 1.08997 * 117.50048 * 359.97438 * 23 19 17 40 40 H 1.09003 * 117.49689 * 107.49943 * 24 23 19 41 41 H 1.08999 * 117.50272 * 252.52240 * 24 23 19 42 42 H 1.08997 * 109.58754 * 173.14453 * 25 16 15 43 43 H 1.09008 * 109.58257 * 293.56437 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1569 1.2279 -0.3877 5 6 1.5493 2.3340 0.4982 6 7 0.4254 2.2470 1.1777 7 14 2.3364 4.0024 0.2044 8 1 2.4339 4.2534 -1.2560 9 1 1.5055 5.0596 0.8344 10 1 3.6960 4.0204 0.8016 11 6 2.1975 -1.2688 -0.0006 12 1 3.2692 -1.0702 -0.0009 13 6 1.8281 -2.0723 1.2484 14 6 2.6181 -3.3830 1.2660 15 6 2.2508 -4.2123 0.0314 16 7 2.4665 -3.3937 -1.1695 17 6 3.2381 -3.8446 -2.1783 18 8 3.4827 -3.1246 -3.1232 19 6 3.7971 -5.2433 -2.1324 20 6 5.0305 -5.4229 -1.2853 21 7 5.9169 -4.4150 -1.1634 22 8 5.2254 -6.4745 -0.7134 23 6 2.8016 -6.4040 -2.1858 24 6 3.6793 -6.0934 -3.4000 25 6 1.8300 -2.0718 -1.2470 26 1 -0.3634 -0.0432 1.0268 27 1 -0.3633 0.9109 -0.4759 28 1 -0.3634 -0.8675 -0.5508 29 1 0.0057 3.0494 1.5256 30 1 0.7605 -2.2918 1.2365 31 1 2.0692 -1.4911 2.1386 32 1 2.3720 -3.9441 2.1675 33 1 3.6859 -3.1645 1.2529 34 1 1.2033 -4.5084 0.0884 35 1 2.8799 -5.1013 -0.0145 36 1 5.7231 -3.5488 -1.5546 37 1 6.7485 -4.5557 -0.6844 38 1 3.0390 -7.2976 -1.6086 39 1 1.7425 -6.1559 -2.2537 40 1 4.4941 -6.7827 -3.6215 41 1 3.1976 -5.6406 -4.2666 42 1 2.1833 -1.5477 -2.1350 43 1 0.7474 -2.1898 -1.2963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027557543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:09 Heat of formation + Delta-G solvation = -43.993098 kcal Electronic energy + Delta-G solvation = -25218.409885 eV Core-core repulsion = 21685.182940 eV Total energy + Delta-G solvation = -3533.226945 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 6.26 seconds Orbital eigenvalues (eV) -42.05154 -40.33412 -38.98306 -37.00369 -36.77936 -34.73346 -33.91004 -32.92836 -30.59602 -28.04976 -27.37708 -25.82246 -25.18707 -23.53679 -23.10255 -22.56479 -20.70213 -19.98401 -18.95645 -18.63001 -18.28173 -17.51705 -16.89682 -16.74523 -16.18198 -15.85585 -15.64894 -15.49826 -15.25939 -15.14730 -14.96838 -14.47359 -14.21148 -13.94858 -13.75581 -13.65755 -12.89054 -12.82775 -12.63257 -12.50718 -12.31560 -12.22525 -12.16386 -11.96891 -11.82399 -11.75144 -11.64663 -11.40481 -11.27717 -10.81131 -10.79134 -10.62841 -9.78826 -8.73741 -7.85545 -5.33281 1.24035 1.34660 1.45570 1.47767 1.54083 1.75847 2.32609 2.50091 2.74209 3.25012 3.29945 3.58587 3.62331 3.72814 3.79093 3.96472 4.00999 4.08473 4.20299 4.34464 4.55123 4.57611 4.64674 4.66905 4.76717 4.83294 4.86488 4.91268 4.98808 5.10168 5.12166 5.27198 5.37783 5.45993 5.47778 5.63051 5.70997 5.72803 6.16250 6.29872 6.33843 6.97133 7.10538 7.14744 7.85413 8.28863 9.18390 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.004117 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.202098 B = 6799.024790 C = 6965.666431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.607 5.607 3 C -0.267 4.267 4 H 0.063 0.937 5 C -0.045 4.045 6 N -0.934 5.934 7 Si 0.965 3.035 8 H -0.281 1.281 9 H -0.292 1.292 10 H -0.277 1.277 11 C 0.168 3.832 12 H 0.047 0.953 13 C -0.121 4.121 14 C -0.122 4.122 15 C 0.107 3.893 16 N -0.591 5.591 17 C 0.549 3.451 18 O -0.568 6.568 19 C -0.214 4.214 20 C 0.569 3.431 21 N -0.836 5.836 22 O -0.562 6.562 23 C -0.115 4.115 24 C -0.112 4.112 25 C 0.112 3.888 26 H 0.000 1.000 27 H 0.023 0.977 28 H 0.028 0.972 29 H 0.249 0.751 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.407 0.593 37 H 0.415 0.585 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.063 -18.517 -4.326 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.330 5.330 3 C -0.397 4.397 4 H 0.081 0.919 5 C -0.241 4.241 6 N -0.580 5.580 7 Si 0.793 3.207 8 H -0.207 1.207 9 H -0.218 1.218 10 H -0.203 1.203 11 C 0.060 3.940 12 H 0.065 0.935 13 C -0.161 4.161 14 C -0.161 4.161 15 C -0.015 4.015 16 N -0.323 5.323 17 C 0.337 3.663 18 O -0.447 6.447 19 C -0.221 4.221 20 C 0.354 3.646 21 N -0.399 5.399 22 O -0.441 6.441 23 C -0.152 4.152 24 C -0.150 4.150 25 C -0.012 4.012 26 H 0.018 0.982 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.236 0.764 37 H 0.247 0.753 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.084 0.916 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.050 -18.696 -4.444 19.870 hybrid contribution 0.508 2.058 0.163 2.126 sum 5.559 -16.638 -4.281 18.057 Atomic orbital electron populations 1.20497 0.82633 0.96666 0.96845 1.44036 1.02053 1.00872 1.86018 1.19435 0.99236 0.87146 1.33865 0.91920 1.25712 0.98616 1.01646 0.98081 1.70198 1.20860 1.27967 1.38981 0.85384 0.77773 0.79812 0.77713 1.20675 1.21821 1.20258 1.20601 0.95035 0.85374 0.92952 0.93475 1.21920 1.00175 0.95845 0.98120 1.21864 0.99999 0.95627 0.98593 1.21994 1.03385 0.93331 0.82746 1.48144 1.47994 1.17798 1.18348 1.19575 0.77901 0.87045 0.81796 1.90718 1.60112 1.58463 1.35388 1.21397 1.00394 0.92325 1.07946 1.18992 0.83002 0.83369 0.79279 1.43740 1.22738 1.14680 1.58736 1.90743 1.77252 1.28264 1.47864 1.23301 0.96460 0.95465 0.99956 1.23186 1.02966 0.98149 0.90652 1.21916 0.97338 0.82266 0.99723 0.98173 0.95795 0.95324 0.94185 0.92142 0.94006 0.88405 0.92342 0.89016 0.88574 0.76385 0.75250 0.85557 0.86072 0.86092 0.86923 0.91592 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.56 8.09 127.77 1.03 9.59 16 2 N -0.61 -29.76 2.81 -703.16 -1.98 -31.74 16 3 C -0.27 -14.63 9.57 84.03 0.80 -13.83 16 4 H 0.06 3.41 7.83 -2.91 -0.02 3.38 16 5 C -0.04 -2.50 5.07 84.86 0.43 -2.07 16 6 N -0.93 -54.52 10.78 21.65 0.23 -54.28 16 7 Si 0.96 45.06 29.57 68.60 2.03 47.09 16 8 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 9 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 C 0.17 6.59 2.73 44.92 0.12 6.72 16 12 H 0.05 1.98 7.87 -2.39 -0.02 1.96 16 13 C -0.12 -4.02 5.15 30.62 0.16 -3.86 16 14 C -0.12 -2.93 6.08 30.67 0.19 -2.75 16 15 C 0.11 2.28 5.98 86.36 0.52 2.79 16 16 N -0.59 -15.95 2.98 -819.73 -2.44 -18.39 16 17 C 0.55 15.02 5.89 87.66 0.52 15.54 16 18 O -0.57 -19.77 16.42 -3.04 -0.05 -19.82 16 19 C -0.21 -4.51 1.26 -53.65 -0.07 -4.58 16 20 C 0.57 12.75 6.78 87.66 0.59 13.35 16 21 N -0.84 -15.87 8.81 -173.53 -1.53 -17.40 16 22 O -0.56 -14.99 17.10 -3.05 -0.05 -15.04 16 23 C -0.11 -1.77 8.60 30.60 0.26 -1.50 16 24 C -0.11 -1.87 9.87 30.62 0.30 -1.57 16 25 C 0.11 3.82 5.78 86.22 0.50 4.32 16 26 H 0.00 0.00 7.74 -2.38 -0.02 -0.02 16 27 H 0.02 1.26 6.90 -2.39 -0.02 1.24 16 28 H 0.03 1.16 6.34 -2.39 -0.02 1.14 16 29 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 30 H 0.06 1.98 7.72 -2.39 -0.02 1.96 16 31 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.10 1.84 5.10 -2.39 -0.01 1.83 16 36 H 0.41 8.13 7.96 -92.71 -0.74 7.40 16 37 H 0.41 6.23 8.93 -92.71 -0.83 5.40 16 38 H 0.13 1.82 7.67 -2.39 -0.02 1.80 16 39 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 2.62 7.00 -2.39 -0.02 2.60 16 43 H 0.07 2.38 6.47 -2.38 -0.02 2.36 16 Total: -1.00 -69.20 343.45 1.05 -68.16 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -0.52 Total: 19.27 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: 5.36 Total: 22.15 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -5.71 Total: -121.81 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.10 Total: -34.86 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -69.20 1.05 -68.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027557543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.165 kcal (2) G-P(sol) polarization free energy of solvation -69.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.27 seconds