Wall clock time and date at job start Tue Mar 31 2020 03:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36942 * 120.00125 * 2 1 4 4 H 1.07999 * 119.99826 * 145.92451 * 3 2 1 5 5 C 1.38810 * 120.00192 * 325.93305 * 3 2 1 6 6 N 1.31616 * 120.00144 * 154.48994 * 5 3 2 7 7 Si 1.86806 * 119.99830 * 334.48618 * 5 3 2 8 8 H 1.48500 * 109.47270 * 94.87120 * 7 5 3 9 9 H 1.48498 * 109.47064 * 214.87364 * 7 5 3 10 10 H 1.48510 * 109.47041 * 334.87322 * 7 5 3 11 11 C 1.46501 * 120.00045 * 180.02562 * 2 1 3 12 12 H 1.08998 * 109.49552 * 180.02562 * 11 2 1 13 13 C 1.53043 * 109.49722 * 59.99591 * 11 2 1 14 14 C 1.53038 * 109.53561 * 178.64924 * 13 11 2 15 15 C 1.53198 * 109.31097 * 61.36835 * 14 13 11 16 16 N 1.46921 * 108.77575 * 305.36367 * 15 14 13 17 17 C 1.34780 * 120.63143 * 233.58581 * 16 15 14 18 18 O 1.21278 * 120.00006 * 174.65936 * 17 16 15 19 19 C 1.50700 * 119.99758 * 354.66526 * 17 16 15 20 20 C 1.50702 * 115.55085 * 281.65733 * 19 17 16 21 21 N 1.34779 * 119.99589 * 320.66168 * 20 19 17 22 22 O 1.21275 * 120.00525 * 140.65485 * 20 19 17 23 23 C 1.52999 * 117.50218 * 67.32730 * 19 17 16 24 24 C 1.52999 * 60.03325 * 107.50127 * 23 19 17 25 25 C 1.46927 * 118.73859 * 53.85754 * 16 15 14 26 26 H 1.08995 * 109.46741 * 264.64991 * 1 2 3 27 27 H 1.08999 * 109.47209 * 24.64443 * 1 2 3 28 28 H 1.08995 * 109.46948 * 144.64848 * 1 2 3 29 29 H 0.97002 * 119.99778 * 179.97438 * 6 5 3 30 30 H 1.09004 * 109.45932 * 58.63308 * 13 11 2 31 31 H 1.08991 * 109.44810 * 298.66794 * 13 11 2 32 32 H 1.08999 * 109.50206 * 301.41472 * 14 13 11 33 33 H 1.08999 * 109.52347 * 181.32901 * 14 13 11 34 34 H 1.08998 * 109.58832 * 185.57440 * 15 14 13 35 35 H 1.08999 * 109.58181 * 65.15059 * 15 14 13 36 36 H 0.96994 * 120.00608 * 5.48960 * 21 20 19 37 37 H 0.97003 * 120.00041 * 185.49393 * 21 20 19 38 38 H 1.08999 * 117.49993 * 215.00259 * 23 19 17 39 39 H 1.09010 * 117.49738 * 359.97438 * 23 19 17 40 40 H 1.08993 * 117.49682 * 107.50072 * 24 23 19 41 41 H 1.08996 * 117.49965 * 252.52511 * 24 23 19 42 42 H 1.08998 * 109.58303 * 65.93294 * 25 16 15 43 43 H 1.09001 * 109.58635 * 186.35679 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.0907 1.2662 0.5240 5 6 1.6344 2.2850 -0.6734 6 7 1.9664 3.5019 -0.2979 7 14 0.4698 2.0366 -2.1127 8 1 -0.9335 2.1151 -1.6332 9 1 0.7057 3.0939 -3.1284 10 1 0.7113 0.7034 -2.7206 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8282 -2.0713 -1.2503 14 6 2.6182 -3.3818 -1.2689 15 6 2.2510 -4.2122 -0.0350 16 7 2.4667 -3.3947 1.1666 17 6 3.2376 -3.8467 2.1755 18 8 3.4872 -3.1254 3.1180 19 6 3.7897 -5.2483 2.1322 20 6 2.8192 -6.3408 2.5007 21 7 1.9443 -6.1531 3.5086 22 8 2.8252 -7.3886 1.8902 23 6 4.8341 -5.5635 1.0596 24 6 5.2562 -5.4432 2.5252 25 6 1.8210 -2.0775 1.2500 26 1 -0.3632 -0.0958 1.0232 27 1 -0.3633 0.9340 -0.4285 28 1 -0.3633 -0.8381 -0.5946 29 1 1.6066 4.2699 -0.7687 30 1 2.0692 -1.4893 -2.1399 31 1 0.7607 -2.2908 -1.2382 32 1 3.6860 -3.1633 -1.2557 33 1 2.3726 -3.9424 -2.1708 34 1 2.8819 -5.1000 0.0090 35 1 1.2036 -4.5083 -0.0923 36 1 1.8844 -5.2886 3.9443 37 1 1.3745 -6.8827 3.7984 38 1 4.8193 -6.5610 0.6204 39 1 5.1217 -4.7571 0.3847 40 1 5.5190 -6.3614 3.0502 41 1 5.8214 -4.5574 2.8151 42 1 0.7393 -2.2031 1.2955 43 1 2.1683 -1.5563 2.1422 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027557544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:17 Heat of formation + Delta-G solvation = -15.452107 kcal Electronic energy + Delta-G solvation = -25198.044957 eV Core-core repulsion = 21666.055643 eV Total energy + Delta-G solvation = -3531.989315 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04241 -39.29156 -37.71703 -36.13851 -35.30148 -33.90343 -32.39174 -31.59577 -29.57762 -26.43822 -26.16773 -24.71046 -23.80306 -22.76193 -21.98716 -21.31568 -19.51747 -18.79076 -17.92827 -17.41875 -16.83884 -16.28599 -15.84775 -15.43167 -15.21737 -14.83913 -14.56261 -14.15987 -14.09668 -13.99439 -13.66505 -13.24361 -12.79997 -12.57173 -12.52869 -12.29016 -12.23358 -11.88158 -11.46151 -11.29809 -11.09731 -10.88243 -10.70779 -10.51895 -10.45712 -10.31990 -10.16913 -10.00458 -9.99899 -9.68839 -9.56982 -8.75259 -8.40120 -6.93026 -6.03521 -3.40333 2.12446 2.41429 2.83659 3.08798 3.28228 3.44403 3.48579 3.56946 4.22248 4.45535 4.48789 4.49450 4.56617 4.79685 5.06033 5.08374 5.23539 5.26469 5.30833 5.37197 5.45821 5.55064 5.59946 5.73918 5.80867 5.82187 5.97207 6.04644 6.18813 6.27638 6.31431 6.44070 6.48417 6.51665 6.68435 6.78551 6.83262 6.97569 7.40300 7.89939 7.97323 8.10082 8.32721 8.92778 9.67072 10.04696 11.12090 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.027616 B = 0.004159 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.650089 B = 6731.434143 C = 6920.436453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.600 5.600 3 C -0.271 4.271 4 H 0.081 0.919 5 C 0.036 3.964 6 N -0.895 5.895 7 Si 0.878 3.122 8 H -0.287 1.287 9 H -0.302 1.302 10 H -0.270 1.270 11 C 0.168 3.832 12 H 0.075 0.925 13 C -0.139 4.139 14 C -0.130 4.130 15 C 0.101 3.899 16 N -0.595 5.595 17 C 0.548 3.452 18 O -0.529 6.529 19 C -0.201 4.201 20 C 0.569 3.431 21 N -0.846 5.846 22 O -0.537 6.537 23 C -0.134 4.134 24 C -0.119 4.119 25 C 0.098 3.902 26 H 0.016 0.984 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.407 0.593 37 H 0.405 0.595 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.063 0.937 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 -20.076 2.852 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.323 5.323 3 C -0.399 4.399 4 H 0.098 0.902 5 C -0.165 4.165 6 N -0.536 5.536 7 Si 0.708 3.292 8 H -0.215 1.215 9 H -0.230 1.230 10 H -0.195 1.195 11 C 0.060 3.940 12 H 0.094 0.906 13 C -0.179 4.179 14 C -0.169 4.169 15 C -0.022 4.022 16 N -0.328 5.328 17 C 0.333 3.667 18 O -0.405 6.405 19 C -0.208 4.208 20 C 0.353 3.647 21 N -0.409 5.409 22 O -0.414 6.414 23 C -0.171 4.171 24 C -0.157 4.157 25 C -0.025 4.025 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.236 0.764 37 H 0.236 0.764 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.546 -20.051 2.837 20.310 hybrid contribution -1.216 0.190 -0.589 1.364 sum 0.330 -19.861 2.248 19.990 Atomic orbital electron populations 1.21357 0.84830 0.99479 0.98099 1.44052 1.00516 1.01484 1.86277 1.18806 1.07276 0.85907 1.27932 0.90161 1.25380 0.98113 0.95019 0.97986 1.69913 1.46269 0.97625 1.39826 0.86973 0.80253 0.77541 0.84446 1.21530 1.23031 1.19461 1.20798 0.97094 0.85608 0.90504 0.90636 1.22160 0.99524 0.95232 1.00971 1.21898 1.01200 0.97017 0.96737 1.21899 1.01699 0.94021 0.84558 1.48129 1.48173 1.19052 1.17411 1.19129 0.78605 0.86282 0.82670 1.90741 1.58295 1.57195 1.34252 1.21486 0.93374 0.93913 1.11995 1.18960 0.79933 0.86583 0.79262 1.43760 1.41460 1.18116 1.37581 1.90748 1.70671 1.27819 1.52124 1.23193 0.96976 1.04825 0.92123 1.23083 0.90092 1.04553 0.97974 1.22489 0.96526 0.81247 1.02281 0.96623 0.93097 0.95318 0.92667 0.91301 0.92462 0.91443 0.91007 0.89412 0.91577 0.76379 0.76402 0.86374 0.87068 0.87402 0.86752 0.91826 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.26 8.38 59.85 0.50 2.77 16 2 N -0.60 -13.79 2.43 -173.09 -0.42 -14.21 16 3 C -0.27 -7.46 9.83 -15.06 -0.15 -7.61 16 4 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 5 C 0.04 1.01 5.24 -17.43 -0.09 0.92 16 6 N -0.90 -27.10 13.97 55.49 0.78 -26.32 16 7 Si 0.88 21.77 25.14 -169.99 -4.27 17.50 16 8 H -0.29 -6.93 6.60 56.52 0.37 -6.56 16 9 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 C 0.17 3.18 2.76 -67.59 -0.19 2.99 16 12 H 0.08 1.54 7.89 -51.93 -0.41 1.13 16 13 C -0.14 -2.23 5.10 -26.69 -0.14 -2.36 16 14 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 15 C 0.10 1.18 6.20 -3.71 -0.02 1.16 16 16 N -0.60 -8.31 2.97 -172.51 -0.51 -8.82 16 17 C 0.55 7.73 6.14 -10.98 -0.07 7.66 16 18 O -0.53 -9.19 16.40 5.56 0.09 -9.10 16 19 C -0.20 -2.27 1.27 -156.77 -0.20 -2.47 16 20 C 0.57 6.55 7.50 -10.98 -0.08 6.46 16 21 N -0.85 -7.57 8.81 31.22 0.28 -7.29 16 22 O -0.54 -7.47 17.11 5.56 0.10 -7.37 16 23 C -0.13 -1.25 7.82 -26.73 -0.21 -1.46 16 24 C -0.12 -1.13 9.85 -26.69 -0.26 -1.40 16 25 C 0.10 1.64 5.82 -3.49 -0.02 1.62 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 1.18 3.31 -51.93 -0.17 1.01 16 28 H 0.03 0.53 6.48 -51.93 -0.34 0.19 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.89 6.76 -51.93 -0.35 0.54 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.93 4.85 -51.93 -0.25 0.68 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.41 3.56 8.19 -40.82 -0.33 3.22 16 37 H 0.40 2.80 8.93 -40.82 -0.36 2.44 16 38 H 0.12 1.05 7.68 -51.93 -0.40 0.65 16 39 H 0.11 0.99 8.14 -51.92 -0.42 0.57 16 40 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 43 H 0.09 1.82 7.00 -51.93 -0.36 1.46 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -33.01 339.73 -6.28 -39.29 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.34 Total: 4.69 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.09 Total: 6.53 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.12 Total: -56.65 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.19 Total: -16.48 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.27 Total: 17.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.01 -6.28 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027557544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.835 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds