Wall clock time and date at job start Tue Mar 31 2020 03:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36942 * 120.00125 * 2 1 4 4 H 1.07999 * 119.99826 * 145.92451 * 3 2 1 5 5 C 1.38810 * 120.00192 * 325.93305 * 3 2 1 6 6 N 1.31616 * 120.00144 * 154.48994 * 5 3 2 7 7 Si 1.86806 * 119.99830 * 334.48618 * 5 3 2 8 8 H 1.48500 * 109.47270 * 94.87120 * 7 5 3 9 9 H 1.48498 * 109.47064 * 214.87364 * 7 5 3 10 10 H 1.48510 * 109.47041 * 334.87322 * 7 5 3 11 11 C 1.46501 * 120.00045 * 180.02562 * 2 1 3 12 12 H 1.08998 * 109.49552 * 180.02562 * 11 2 1 13 13 C 1.53043 * 109.49722 * 59.99591 * 11 2 1 14 14 C 1.53038 * 109.53561 * 178.64924 * 13 11 2 15 15 C 1.53198 * 109.31097 * 61.36835 * 14 13 11 16 16 N 1.46921 * 108.77575 * 305.36367 * 15 14 13 17 17 C 1.34780 * 120.63143 * 233.58581 * 16 15 14 18 18 O 1.21278 * 120.00006 * 174.65936 * 17 16 15 19 19 C 1.50700 * 119.99758 * 354.66526 * 17 16 15 20 20 C 1.50702 * 115.55085 * 281.65733 * 19 17 16 21 21 N 1.34779 * 119.99589 * 320.66168 * 20 19 17 22 22 O 1.21275 * 120.00525 * 140.65485 * 20 19 17 23 23 C 1.52999 * 117.50218 * 67.32730 * 19 17 16 24 24 C 1.52999 * 60.03325 * 107.50127 * 23 19 17 25 25 C 1.46927 * 118.73859 * 53.85754 * 16 15 14 26 26 H 1.08995 * 109.46741 * 264.64991 * 1 2 3 27 27 H 1.08999 * 109.47209 * 24.64443 * 1 2 3 28 28 H 1.08995 * 109.46948 * 144.64848 * 1 2 3 29 29 H 0.97002 * 119.99778 * 179.97438 * 6 5 3 30 30 H 1.09004 * 109.45932 * 58.63308 * 13 11 2 31 31 H 1.08991 * 109.44810 * 298.66794 * 13 11 2 32 32 H 1.08999 * 109.50206 * 301.41472 * 14 13 11 33 33 H 1.08999 * 109.52347 * 181.32901 * 14 13 11 34 34 H 1.08998 * 109.58832 * 185.57440 * 15 14 13 35 35 H 1.08999 * 109.58181 * 65.15059 * 15 14 13 36 36 H 0.96994 * 120.00608 * 5.48960 * 21 20 19 37 37 H 0.97003 * 120.00041 * 185.49393 * 21 20 19 38 38 H 1.08999 * 117.49993 * 215.00259 * 23 19 17 39 39 H 1.09010 * 117.49738 * 359.97438 * 23 19 17 40 40 H 1.08993 * 117.49682 * 107.50072 * 24 23 19 41 41 H 1.08996 * 117.49965 * 252.52511 * 24 23 19 42 42 H 1.08998 * 109.58303 * 65.93294 * 25 16 15 43 43 H 1.09001 * 109.58635 * 186.35679 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.0907 1.2662 0.5240 5 6 1.6344 2.2850 -0.6734 6 7 1.9664 3.5019 -0.2979 7 14 0.4698 2.0366 -2.1127 8 1 -0.9335 2.1151 -1.6332 9 1 0.7057 3.0939 -3.1284 10 1 0.7113 0.7034 -2.7206 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8282 -2.0713 -1.2503 14 6 2.6182 -3.3818 -1.2689 15 6 2.2510 -4.2122 -0.0350 16 7 2.4667 -3.3947 1.1666 17 6 3.2376 -3.8467 2.1755 18 8 3.4872 -3.1254 3.1180 19 6 3.7897 -5.2483 2.1322 20 6 2.8192 -6.3408 2.5007 21 7 1.9443 -6.1531 3.5086 22 8 2.8252 -7.3886 1.8902 23 6 4.8341 -5.5635 1.0596 24 6 5.2562 -5.4432 2.5252 25 6 1.8210 -2.0775 1.2500 26 1 -0.3632 -0.0958 1.0232 27 1 -0.3633 0.9340 -0.4285 28 1 -0.3633 -0.8381 -0.5946 29 1 1.6066 4.2699 -0.7687 30 1 2.0692 -1.4893 -2.1399 31 1 0.7607 -2.2908 -1.2382 32 1 3.6860 -3.1633 -1.2557 33 1 2.3726 -3.9424 -2.1708 34 1 2.8819 -5.1000 0.0090 35 1 1.2036 -4.5083 -0.0923 36 1 1.8844 -5.2886 3.9443 37 1 1.3745 -6.8827 3.7984 38 1 4.8193 -6.5610 0.6204 39 1 5.1217 -4.7571 0.3847 40 1 5.5190 -6.3614 3.0502 41 1 5.8214 -4.5574 2.8151 42 1 0.7393 -2.2031 1.2955 43 1 2.1683 -1.5563 2.1422 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027557544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:16 Heat of formation + Delta-G solvation = -40.574825 kcal Electronic energy + Delta-G solvation = -25199.134360 eV Core-core repulsion = 21666.055643 eV Total energy + Delta-G solvation = -3533.078718 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.05507 -40.36303 -39.04093 -37.06533 -36.86370 -34.72647 -34.07162 -33.13336 -31.06866 -28.08180 -27.44623 -25.87668 -25.28571 -23.56658 -23.18231 -22.54463 -20.78970 -19.88155 -19.02930 -18.78913 -18.24721 -17.57156 -17.19801 -16.74829 -16.36524 -15.91462 -15.75167 -15.45014 -15.29142 -15.17969 -15.08121 -14.48337 -14.27151 -14.15573 -13.97642 -13.88704 -13.69973 -12.95303 -12.66020 -12.59009 -12.28053 -12.17216 -12.08973 -11.94451 -11.85208 -11.71299 -11.64715 -11.35412 -11.24365 -10.82733 -10.80436 -10.64644 -9.80670 -8.81765 -8.22310 -5.55916 1.22559 1.31119 1.34762 1.42512 1.54037 1.74118 2.29672 2.41598 2.72612 3.02221 3.23143 3.33703 3.61033 3.70703 3.76941 3.94476 3.99245 4.05806 4.15105 4.33374 4.50545 4.52055 4.56893 4.62770 4.65231 4.77281 4.81620 4.85758 4.86716 4.98856 4.99608 5.08818 5.13049 5.37065 5.41055 5.44938 5.73714 5.88691 6.13321 6.16920 6.28937 6.92194 6.98216 7.11243 7.60584 7.99594 8.97919 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.027616 B = 0.004159 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.650089 B = 6731.434143 C = 6920.436453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.613 5.613 3 C -0.264 4.264 4 H 0.035 0.965 5 C -0.021 4.021 6 N -0.948 5.948 7 Si 0.949 3.051 8 H -0.273 1.273 9 H -0.311 1.311 10 H -0.253 1.253 11 C 0.167 3.833 12 H 0.047 0.953 13 C -0.131 4.131 14 C -0.122 4.122 15 C 0.101 3.899 16 N -0.594 5.594 17 C 0.549 3.451 18 O -0.569 6.569 19 C -0.211 4.211 20 C 0.572 3.428 21 N -0.834 5.834 22 O -0.560 6.560 23 C -0.120 4.120 24 C -0.114 4.114 25 C 0.112 3.888 26 H 0.025 0.975 27 H 0.032 0.968 28 H 0.064 0.936 29 H 0.264 0.736 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.409 0.591 37 H 0.415 0.585 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 -23.326 1.444 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.337 5.337 3 C -0.394 4.394 4 H 0.053 0.947 5 C -0.218 4.218 6 N -0.592 5.592 7 Si 0.777 3.223 8 H -0.200 1.200 9 H -0.240 1.240 10 H -0.176 1.176 11 C 0.059 3.941 12 H 0.065 0.935 13 C -0.170 4.170 14 C -0.160 4.160 15 C -0.020 4.020 16 N -0.325 5.325 17 C 0.336 3.664 18 O -0.448 6.448 19 C -0.217 4.217 20 C 0.355 3.645 21 N -0.397 5.397 22 O -0.439 6.439 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.012 4.012 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.238 0.762 37 H 0.249 0.751 38 H 0.148 0.852 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.126 0.874 42 H 0.096 0.904 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.251 -23.372 1.432 23.417 hybrid contribution -0.741 1.193 -0.011 1.404 sum -0.490 -22.179 1.422 22.230 Atomic orbital electron populations 1.21433 0.83371 0.99871 0.99238 1.44104 1.01500 1.01390 1.86748 1.18639 1.05972 0.88052 1.26725 0.94743 1.26024 1.00903 0.94422 1.00438 1.70049 1.49097 0.98653 1.41375 0.85815 0.78593 0.77710 0.80143 1.19994 1.23958 1.17646 1.20869 0.95180 0.84735 0.93271 0.93503 1.22015 1.00889 0.96297 0.97832 1.21869 1.00482 0.95248 0.98406 1.22099 1.03109 0.93894 0.82934 1.48157 1.47824 1.18076 1.18473 1.19570 0.77787 0.87137 0.81866 1.90727 1.59593 1.58642 1.35792 1.21384 0.94131 0.91818 1.14396 1.18913 0.80022 0.86111 0.79429 1.43694 1.40793 1.18562 1.36672 1.90742 1.71425 1.28601 1.53156 1.23299 0.94924 1.05535 0.91938 1.23190 0.88477 1.05042 0.98507 1.22058 0.97244 0.82331 0.99565 0.95715 0.95005 0.91729 0.92749 0.93049 0.91124 0.91627 0.87739 0.87733 0.90004 0.76154 0.75149 0.85208 0.86568 0.85724 0.87392 0.90438 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.23 8.38 127.77 1.07 5.30 16 2 N -0.61 -28.19 2.43 -701.54 -1.70 -29.89 16 3 C -0.26 -15.09 9.83 84.03 0.83 -14.27 16 4 H 0.03 2.23 8.06 -2.91 -0.02 2.20 16 5 C -0.02 -1.24 5.24 84.86 0.44 -0.80 16 6 N -0.95 -59.55 13.97 21.65 0.30 -59.25 16 7 Si 0.95 45.22 25.14 68.60 1.72 46.95 16 8 H -0.27 -12.29 6.60 99.48 0.66 -11.63 16 9 H -0.31 -15.13 7.11 99.48 0.71 -14.42 16 10 H -0.25 -11.21 7.11 99.48 0.71 -10.50 16 11 C 0.17 6.23 2.76 45.21 0.12 6.36 16 12 H 0.05 1.99 7.89 -2.39 -0.02 1.97 16 13 C -0.13 -3.83 5.10 30.62 0.16 -3.68 16 14 C -0.12 -2.52 6.08 30.67 0.19 -2.33 16 15 C 0.10 2.00 6.20 86.37 0.54 2.54 16 16 N -0.59 -15.61 2.97 -818.07 -2.43 -18.04 16 17 C 0.55 14.96 6.14 87.66 0.54 15.50 16 18 O -0.57 -20.04 16.40 -3.02 -0.05 -20.09 16 19 C -0.21 -4.34 1.27 -53.65 -0.07 -4.41 16 20 C 0.57 11.77 7.50 87.66 0.66 12.42 16 21 N -0.83 -13.21 8.81 -173.53 -1.53 -14.74 16 22 O -0.56 -14.05 17.11 -3.02 -0.05 -14.10 16 23 C -0.12 -1.92 7.82 30.59 0.24 -1.68 16 24 C -0.11 -1.96 9.85 30.62 0.30 -1.66 16 25 C 0.11 3.70 5.82 86.51 0.50 4.20 16 26 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.03 1.41 3.31 -2.39 -0.01 1.40 16 28 H 0.06 2.13 6.48 -2.39 -0.02 2.12 16 29 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.89 6.76 -2.39 -0.02 1.88 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 1.80 4.85 -2.39 -0.01 1.79 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.41 6.52 8.19 -92.71 -0.76 5.76 16 37 H 0.42 4.84 8.93 -92.71 -0.83 4.01 16 38 H 0.13 1.86 7.68 -2.39 -0.02 1.84 16 39 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.08 2.34 7.53 -2.39 -0.02 2.32 16 43 H 0.06 2.44 7.00 -2.39 -0.02 2.42 16 Total: -1.00 -74.41 339.73 1.19 -73.21 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -0.59 Total: 18.45 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 5.52 Total: 17.50 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -5.36 Total: -121.92 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.10 Total: -34.19 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.72 Total: 46.95 kcal Total: -74.41 1.19 -73.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027557544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.637 kcal (2) G-P(sol) polarization free energy of solvation -74.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds