Wall clock time and date at job start Tue Mar 31 2020 03:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 120.00223 * 2 1 4 4 H 1.07997 * 120.00609 * 195.23806 * 3 2 1 5 5 C 1.38821 * 119.99618 * 15.24027 * 3 2 1 6 6 N 1.31616 * 120.00220 * 18.03853 * 5 3 2 7 7 Si 1.86803 * 119.99609 * 198.04443 * 5 3 2 8 8 H 1.48499 * 109.47314 * 59.99719 * 7 5 3 9 9 H 1.48504 * 109.46884 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47018 * 299.99396 * 7 5 3 11 11 C 1.46498 * 120.00075 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.49919 * 180.02562 * 11 2 1 13 13 C 1.53044 * 109.49658 * 60.00133 * 11 2 1 14 14 C 1.53040 * 109.53804 * 178.68433 * 13 11 2 15 15 C 1.53193 * 109.31476 * 61.36292 * 14 13 11 16 16 N 1.46932 * 108.89406 * 305.29540 * 15 14 13 17 17 C 1.34774 * 120.63148 * 233.67983 * 16 15 14 18 18 O 1.21277 * 120.00067 * 179.97438 * 17 16 15 19 19 C 1.50701 * 119.99788 * 359.97438 * 17 16 15 20 20 H 1.08996 * 115.55047 * 294.56015 * 19 17 16 21 21 C 1.53002 * 117.49761 * 80.23506 * 19 17 16 22 22 C 1.53001 * 59.99977 * 107.48558 * 21 19 17 23 23 H 1.09005 * 117.49541 * 107.49000 * 22 21 19 24 24 C 1.50701 * 117.49893 * 252.50712 * 22 21 19 25 25 N 1.34773 * 119.99977 * 156.77025 * 24 22 21 26 26 O 1.21281 * 119.99553 * 336.77299 * 24 22 21 27 27 C 1.47205 * 118.55460 * 53.53522 * 16 15 14 28 28 H 1.09001 * 109.47034 * 274.14027 * 1 2 3 29 29 H 1.08999 * 109.47089 * 34.13264 * 1 2 3 30 30 H 1.08998 * 109.47165 * 154.13819 * 1 2 3 31 31 H 0.97000 * 119.99822 * 180.02562 * 6 5 3 32 32 H 1.08995 * 109.46129 * 58.66390 * 13 11 2 33 33 H 1.09005 * 109.45703 * 298.70056 * 13 11 2 34 34 H 1.09001 * 109.49603 * 301.41106 * 14 13 11 35 35 H 1.08993 * 109.52649 * 181.32885 * 14 13 11 36 36 H 1.09000 * 109.58392 * 65.14951 * 15 14 13 37 37 H 1.08994 * 109.59186 * 185.43545 * 15 14 13 38 38 H 1.09000 * 117.49540 * 214.98057 * 21 19 17 39 39 H 1.09000 * 117.49907 * 359.96965 * 21 19 17 40 40 H 0.96996 * 119.99786 * 0.02562 * 25 24 22 41 41 H 0.96996 * 119.99868 * 179.97438 * 25 24 22 42 42 H 1.09001 * 109.53775 * 186.67298 * 27 16 15 43 43 H 1.09003 * 109.67426 * 66.37059 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2012 1.2024 -0.2458 5 6 1.4922 2.3669 0.3160 6 7 0.3388 2.3290 0.9488 7 14 2.2445 4.0100 -0.1570 8 1 2.4075 4.0737 -1.6317 9 1 1.3523 5.1099 0.2898 10 1 3.5714 4.1528 0.4944 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0700 0.0009 13 6 1.8282 -2.0723 -1.2485 14 6 2.6176 -3.3833 -1.2655 15 6 2.2497 -4.2123 -0.0310 16 7 2.4661 -3.3965 1.1717 17 6 3.2376 -3.8500 2.1794 18 8 3.4089 -3.1669 3.1668 19 6 3.8875 -5.2060 2.0793 20 1 3.2039 -6.0548 2.0616 21 6 5.1708 -5.3151 1.2534 22 6 5.2342 -5.3974 2.7799 23 1 5.4367 -6.3723 3.2233 24 6 5.8092 -4.2155 3.5172 25 7 5.4836 -4.0028 4.8076 26 8 6.5649 -3.4557 2.9493 27 6 1.8249 -2.0738 1.2495 28 1 -0.3633 0.0742 1.0250 29 1 -0.3633 0.8506 -0.5766 30 1 -0.3633 -0.9247 -0.4483 31 1 -0.1208 3.1543 1.1693 32 1 2.0698 -1.4914 -2.1386 33 1 0.7605 -2.2914 -1.2367 34 1 3.6855 -3.1652 -1.2523 35 1 2.3721 -3.9446 -2.1670 36 1 1.2021 -4.5079 -0.0883 37 1 2.8784 -5.1016 0.0127 38 1 5.3316 -6.2358 0.6926 39 1 5.5448 -4.4062 0.7821 40 1 4.8794 -4.6107 5.2618 41 1 5.8539 -3.2424 5.2823 42 1 2.1750 -1.5507 2.1394 43 1 0.7424 -2.1929 1.2979 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027579589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:48 Heat of formation + Delta-G solvation = -18.903624 kcal Electronic energy + Delta-G solvation = -25020.497460 eV Core-core repulsion = 21488.358476 eV Total energy + Delta-G solvation = -3532.138984 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.58167 -39.07638 -37.43394 -35.92580 -35.05583 -33.40763 -32.27534 -31.25190 -28.87961 -26.07303 -25.94197 -24.62632 -23.80342 -22.92044 -21.64280 -20.41408 -19.30013 -18.50095 -17.68202 -16.97634 -16.72656 -16.26120 -15.73657 -15.28589 -15.05326 -14.43363 -14.11502 -13.99470 -13.82305 -13.64617 -13.48122 -12.97666 -12.64227 -12.48221 -12.34780 -12.17488 -11.85275 -11.20314 -11.03271 -10.89361 -10.81134 -10.73406 -10.56441 -10.37417 -10.32109 -10.16842 -9.92673 -9.79929 -9.75343 -9.54593 -9.39512 -8.54518 -8.28395 -6.81274 -5.70422 -3.08404 2.60174 2.70772 3.08198 3.43874 3.45915 3.48702 3.50994 3.75014 4.40317 4.49253 4.53776 4.57420 4.91762 4.99602 5.07507 5.17039 5.30175 5.43189 5.46256 5.48835 5.55041 5.61127 5.77158 5.85303 5.91887 6.01392 6.15152 6.24549 6.39193 6.50794 6.67865 6.78679 6.92629 6.94004 6.99851 7.43127 7.48215 7.66878 7.70620 7.85817 8.35819 8.41134 8.42397 9.25933 9.89961 10.35583 11.35574 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.004533 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.700199 B = 6175.695392 C = 6982.271007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.593 5.593 3 C -0.254 4.254 4 H 0.071 0.929 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.109 3.891 16 N -0.599 5.599 17 C 0.533 3.467 18 O -0.530 6.530 19 C -0.163 4.163 20 H 0.136 0.864 21 C -0.128 4.128 22 C -0.165 4.165 23 H 0.134 0.866 24 C 0.559 3.441 25 N -0.835 5.835 26 O -0.546 6.546 27 C 0.099 3.901 28 H 0.023 0.977 29 H 0.051 0.949 30 H -0.001 1.001 31 H 0.252 0.748 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.399 0.601 41 H 0.401 0.599 42 H 0.089 0.911 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.466 -20.975 0.857 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.314 5.314 3 C -0.383 4.383 4 H 0.089 0.911 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.014 4.014 16 N -0.332 5.332 17 C 0.320 3.680 18 O -0.406 6.406 19 C -0.185 4.185 20 H 0.154 0.846 21 C -0.165 4.165 22 C -0.186 4.186 23 H 0.152 0.848 24 C 0.343 3.657 25 N -0.396 5.396 26 O -0.424 6.424 27 C -0.024 4.024 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.017 0.983 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.226 0.774 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.878 -20.019 0.922 20.625 hybrid contribution -0.055 0.827 0.287 0.877 sum 4.822 -19.192 1.209 19.826 Atomic orbital electron populations 1.20810 0.82402 0.95879 0.99134 1.44012 1.01960 1.00062 1.85385 1.19240 0.94547 0.84039 1.40461 0.91134 1.24853 0.97650 0.98047 0.99202 1.70123 1.17319 1.26292 1.41565 0.86337 0.78308 0.83588 0.78414 1.21147 1.21660 1.20959 1.20592 0.96478 0.86122 0.90820 0.91757 1.22089 0.99594 0.95011 1.00589 1.21900 1.01140 0.97229 0.96725 1.21723 1.01138 0.93711 0.84868 1.48249 1.48733 1.19007 1.17258 1.19564 0.78868 0.86474 0.83119 1.90730 1.61024 1.57956 1.30923 1.22321 0.91319 0.98314 1.06544 0.84649 1.23070 0.96693 1.05130 0.91637 1.22263 0.99967 0.99625 0.96764 0.84783 1.19256 0.79723 0.84752 0.81963 1.43484 1.50982 1.32345 1.12786 1.90741 1.36992 1.47423 1.67210 1.22598 0.96586 0.80814 1.02404 0.95820 0.93076 0.98281 0.93738 0.91644 0.92274 0.91672 0.91220 0.91627 0.90161 0.86856 0.87037 0.77384 0.76873 0.89229 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 7.93 59.85 0.47 4.46 16 2 N -0.59 -14.96 2.82 -173.34 -0.49 -15.45 16 3 C -0.25 -7.16 9.67 -15.06 -0.15 -7.30 16 4 H 0.07 1.98 7.78 -52.49 -0.41 1.57 16 5 C 0.00 0.01 5.02 -17.43 -0.09 -0.08 16 6 N -0.91 -26.89 10.57 55.49 0.59 -26.31 16 7 Si 0.90 22.49 29.59 -169.99 -5.03 17.46 16 8 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 C 0.17 3.52 2.74 -67.81 -0.19 3.34 16 12 H 0.06 1.46 7.82 -51.93 -0.41 1.05 16 13 C -0.13 -2.21 5.13 -26.69 -0.14 -2.34 16 14 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 15 C 0.11 1.24 6.34 -3.71 -0.02 1.22 16 16 N -0.60 -9.28 2.98 -172.54 -0.51 -9.80 16 17 C 0.53 8.33 7.13 -10.99 -0.08 8.26 16 18 O -0.53 -10.27 13.85 5.56 0.08 -10.19 16 19 C -0.16 -1.69 4.36 -91.77 -0.40 -2.09 16 20 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.13 -1.23 9.19 -26.73 -0.25 -1.47 16 22 C -0.16 -1.68 6.18 -91.77 -0.57 -2.25 16 23 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 24 C 0.56 8.03 5.69 -10.99 -0.06 7.97 16 25 N -0.84 -9.59 8.18 31.22 0.26 -9.33 16 26 O -0.55 -10.47 17.35 5.56 0.10 -10.37 16 27 C 0.10 1.94 5.80 -3.56 -0.02 1.92 16 28 H 0.02 0.63 7.59 -51.93 -0.39 0.23 16 29 H 0.05 1.36 6.87 -51.93 -0.36 1.01 16 30 H 0.00 -0.03 6.46 -51.93 -0.34 -0.36 16 31 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.97 6.71 -51.93 -0.35 0.62 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.69 5.87 -51.93 -0.30 0.38 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.11 1.41 7.86 -51.93 -0.41 1.00 16 40 H 0.40 3.38 8.83 -40.82 -0.36 3.02 16 41 H 0.40 4.52 8.93 -40.82 -0.36 4.16 16 42 H 0.09 2.09 7.02 -51.93 -0.36 1.72 16 43 H 0.06 1.20 7.51 -51.93 -0.39 0.81 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -35.94 342.48 -8.03 -43.97 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.54 Total: 5.01 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -1.64 Total: 9.83 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.16 Total: -60.89 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.17 Total: -20.56 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.94 -8.03 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027579589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.070 kcal (2) G-P(sol) polarization free energy of solvation -35.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds