Wall clock time and date at job start Tue Mar 31 2020 03:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34563 * 124.43508 * 2 1 4 4 O 1.21287 * 124.91497 * 359.58883 * 3 2 1 5 5 C 1.51283 * 110.14625 * 179.64191 * 3 2 1 6 6 C 1.54625 * 104.19271 * 343.67846 * 5 3 2 7 7 C 1.46766 * 124.35462 * 179.97438 * 2 1 3 8 8 H 1.09000 * 110.24320 * 77.92871 * 7 2 1 9 9 C 1.50699 * 110.24545 * 316.02072 * 7 2 1 10 10 O 1.21281 * 120.00037 * 342.63320 * 9 7 2 11 11 N 1.34775 * 120.00296 * 162.62266 * 9 7 2 12 12 C 1.46498 * 120.00451 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47271 * 185.65368 * 12 11 9 14 14 H 1.08991 * 109.87392 * 304.77399 * 13 12 11 15 15 C 1.54324 * 110.01042 * 65.87368 * 13 12 11 16 16 C 1.55156 * 102.94622 * 141.68125 * 15 13 12 17 17 C 1.55128 * 101.48248 * 324.33197 * 16 15 13 18 18 N 1.47024 * 109.88200 * 183.75185 * 13 12 11 19 19 C 1.36939 * 125.64456 * 61.45535 * 18 13 12 20 20 H 1.08000 * 119.99887 * 14.65835 * 19 18 13 21 21 C 1.38806 * 119.99830 * 194.93308 * 19 18 13 22 22 N 1.31621 * 120.00373 * 359.72593 * 21 19 18 23 23 Si 1.86805 * 120.00009 * 179.72513 * 21 19 18 24 24 H 1.48503 * 109.46883 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47240 * 119.99835 * 23 21 19 26 26 H 1.48499 * 109.47106 * 240.00505 * 23 21 19 27 27 H 1.09008 * 109.47262 * 270.07442 * 1 2 3 28 28 H 1.08997 * 109.47406 * 30.07648 * 1 2 3 29 29 H 1.08997 * 109.47317 * 150.08000 * 1 2 3 30 30 H 1.08992 * 110.48734 * 224.99711 * 5 3 2 31 31 H 1.09002 * 110.59450 * 102.40782 * 5 3 2 32 32 H 1.08999 * 110.97034 * 266.68002 * 6 5 3 33 33 H 1.08995 * 110.97234 * 142.91330 * 6 5 3 34 34 H 0.97011 * 119.99558 * 0.02562 * 11 9 7 35 35 H 1.08998 * 109.46808 * 65.65175 * 12 11 9 36 36 H 1.09006 * 109.46726 * 305.65711 * 12 11 9 37 37 H 1.09002 * 110.71938 * 260.04706 * 15 13 12 38 38 H 1.09003 * 110.72590 * 23.31306 * 15 13 12 39 39 H 1.09002 * 111.00353 * 82.57067 * 16 15 13 40 40 H 1.09002 * 111.00494 * 206.38263 * 16 15 13 41 41 H 1.08997 * 110.49526 * 278.44840 * 17 16 15 42 42 H 1.09007 * 110.34376 * 156.05987 * 17 16 15 43 43 H 0.96991 * 120.00317 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2258 1.1098 0.0000 4 8 1.7981 2.2448 -0.0071 5 6 3.6918 0.7365 0.0089 6 6 3.7020 -0.7497 0.4355 7 6 2.2931 -1.2116 0.0005 8 1 2.3294 -1.6441 -0.9993 9 6 1.7475 -2.2159 0.9828 10 8 0.9708 -1.8613 1.8442 11 7 2.1223 -3.5080 0.9039 12 6 1.5915 -4.4844 1.8584 13 6 2.2770 -5.8348 1.6411 14 1 2.1622 -6.1458 0.6028 15 6 3.7754 -5.7294 1.9949 16 6 4.0669 -7.0897 2.6819 17 6 2.7375 -7.3440 3.4398 18 7 1.6879 -6.8439 2.5335 19 6 0.3795 -7.2481 2.5276 20 1 -0.2572 -7.0041 1.6901 21 6 -0.1298 -7.9663 3.6006 22 7 0.6461 -8.2637 4.6213 23 14 -1.9167 -8.5110 3.5960 24 1 -2.5703 -8.0539 2.3434 25 1 -1.9829 -9.9922 3.6774 26 1 -2.6176 -7.9192 4.7638 27 1 -0.3634 0.0013 1.0277 28 1 -0.3634 0.8893 -0.5150 29 1 -0.3634 -0.8907 -0.5126 30 1 4.2360 1.3445 0.7315 31 1 4.1226 0.8508 -0.9859 32 1 3.8288 -0.8452 1.5138 33 1 4.4752 -1.3033 -0.0973 34 1 2.7438 -3.7916 0.2151 35 1 0.5176 -4.5935 1.7071 36 1 1.7820 -4.1395 2.8748 37 1 4.3774 -5.6158 1.0933 38 1 3.9519 -4.9036 2.6841 39 1 4.2543 -7.8685 1.9426 40 1 4.9019 -7.0051 3.3774 41 1 2.7222 -6.7918 4.3794 42 1 2.6039 -8.4102 3.6233 43 1 0.2901 -8.7653 5.3712 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028079764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:36 Heat of formation + Delta-G solvation = -67.778966 kcal Electronic energy + Delta-G solvation = -24329.067650 eV Core-core repulsion = 20794.809272 eV Total energy + Delta-G solvation = -3534.258378 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92425 -40.31174 -39.20720 -37.30066 -35.79127 -34.41804 -33.71604 -31.50139 -30.78091 -28.96073 -27.65547 -26.67605 -25.48855 -23.44087 -22.05825 -21.62688 -21.19041 -20.44397 -18.99214 -18.37465 -17.87382 -17.28579 -17.06312 -16.57815 -16.34613 -16.12420 -15.71013 -15.43581 -14.88225 -14.78461 -14.60005 -14.51200 -13.94611 -13.65907 -13.64470 -13.51011 -13.34313 -13.13159 -12.98488 -12.85387 -12.78763 -12.67769 -12.03381 -11.98658 -11.86445 -11.69508 -11.45533 -11.35955 -11.14128 -10.91981 -10.69204 -10.08200 -9.77956 -8.85079 -7.89366 -5.26432 1.41480 1.43306 1.45202 1.52132 1.53817 1.86299 2.24703 2.49037 3.28491 3.31311 3.42560 3.66665 3.85333 3.99837 4.01974 4.03207 4.11879 4.27779 4.30998 4.39066 4.49105 4.56838 4.60949 4.76653 4.80529 4.85530 4.99698 5.01982 5.04794 5.08793 5.18860 5.25541 5.32771 5.38818 5.48847 5.60837 5.68663 5.80063 6.01101 6.23531 6.58986 7.03642 7.09131 7.27559 7.77106 8.42212 9.21636 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.003639 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.289035 B = 7691.694873 C = 8724.297623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.609 5.609 3 C 0.503 3.497 4 O -0.584 6.584 5 C -0.140 4.140 6 C -0.110 4.110 7 C 0.116 3.884 8 H 0.149 0.851 9 C 0.497 3.503 10 O -0.584 6.584 11 N -0.696 5.696 12 C 0.130 3.870 13 C 0.147 3.853 14 H 0.056 0.944 15 C -0.111 4.111 16 C -0.134 4.134 17 C 0.172 3.828 18 N -0.613 5.613 19 C -0.237 4.237 20 H 0.078 0.922 21 C -0.060 4.060 22 N -0.946 5.946 23 Si 0.968 3.032 24 H -0.266 1.266 25 H -0.289 1.289 26 H -0.298 1.298 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.074 0.926 33 H 0.153 0.847 34 H 0.421 0.579 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.081 0.919 41 H -0.011 1.011 42 H 0.034 0.966 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.495 11.150 -14.549 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.341 5.341 3 C 0.293 3.707 4 O -0.465 6.465 5 C -0.179 4.179 6 C -0.148 4.148 7 C 0.009 3.991 8 H 0.167 0.833 9 C 0.283 3.717 10 O -0.463 6.463 11 N -0.349 5.349 12 C 0.004 3.996 13 C 0.040 3.960 14 H 0.074 0.926 15 C -0.148 4.148 16 C -0.173 4.173 17 C 0.047 3.953 18 N -0.337 5.337 19 C -0.366 4.366 20 H 0.096 0.904 21 C -0.254 4.254 22 N -0.594 5.594 23 Si 0.797 3.203 24 H -0.190 1.190 25 H -0.216 1.216 26 H -0.225 1.225 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.161 0.839 32 H 0.093 0.907 33 H 0.171 0.829 34 H 0.259 0.741 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.131 0.869 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.007 0.993 42 H 0.052 0.948 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.481 11.823 -13.823 21.510 hybrid contribution -1.707 -0.649 0.819 2.002 sum 9.774 11.174 -13.004 19.736 Atomic orbital electron populations 1.21466 0.78303 1.02951 1.01378 1.48133 1.06790 1.06943 1.72280 1.21879 0.91522 0.83427 0.73856 1.90691 1.80137 1.22797 1.52875 1.22412 0.90816 0.97465 1.07232 1.22757 0.93328 0.95265 1.03479 1.22024 0.92398 0.84381 1.00302 0.83328 1.21381 0.81063 0.83698 0.85550 1.90747 1.37038 1.80035 1.38492 1.45750 1.47943 1.06846 1.34405 1.21657 0.97300 0.89234 0.91442 1.21386 0.93454 0.86316 0.94824 0.92595 1.22610 0.93428 0.96969 1.01808 1.22905 0.96795 0.97845 0.99726 1.21318 0.86243 0.97161 0.90600 1.44788 1.06235 1.42831 1.39855 1.19337 0.86761 1.29108 1.01397 0.90414 1.25658 1.01541 1.02290 0.95877 1.70140 1.35535 1.44646 1.09072 0.85165 0.80412 0.77303 0.77433 1.19026 1.21573 1.22505 0.94243 0.90792 0.90064 0.86923 0.83930 0.90743 0.82933 0.74102 0.95140 0.94851 0.86942 0.91629 0.91029 0.90088 0.99301 0.94801 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.49 9.59 127.77 1.23 3.71 16 2 N -0.61 -13.59 3.01 -822.81 -2.48 -16.07 16 3 C 0.50 11.76 8.03 87.88 0.71 12.46 16 4 O -0.58 -19.16 17.60 -3.05 -0.05 -19.22 16 5 C -0.14 -1.53 6.86 30.59 0.21 -1.32 16 6 C -0.11 -0.95 6.67 31.66 0.21 -0.74 16 7 C 0.12 1.73 3.71 44.71 0.17 1.90 16 8 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 9 C 0.50 12.35 6.71 87.66 0.59 12.94 16 10 O -0.58 -21.66 15.00 -3.03 -0.05 -21.71 16 11 N -0.70 -15.51 5.35 -463.07 -2.48 -17.99 16 12 C 0.13 4.53 5.09 86.38 0.44 4.97 16 13 C 0.15 5.05 3.19 45.34 0.14 5.19 16 14 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 15 C -0.11 -2.85 6.18 31.78 0.20 -2.65 16 16 C -0.13 -4.24 7.10 32.06 0.23 -4.01 16 17 C 0.17 8.04 5.42 86.93 0.47 8.51 16 18 N -0.61 -29.34 3.13 -667.85 -2.09 -31.43 16 19 C -0.24 -12.81 9.73 84.03 0.82 -12.00 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.06 -3.38 5.47 84.86 0.46 -2.91 16 22 N -0.95 -56.47 10.57 21.65 0.23 -56.25 16 23 Si 0.97 45.81 29.55 68.60 2.03 47.83 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 27 H 0.04 1.19 7.49 -2.38 -0.02 1.17 16 28 H 0.07 1.74 7.93 -2.39 -0.02 1.72 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.94 7.91 -2.39 -0.02 0.92 16 33 H 0.15 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.42 5.33 8.39 -92.70 -0.78 4.55 16 35 H 0.03 1.28 7.88 -2.39 -0.02 1.26 16 36 H 0.03 1.38 8.05 -2.38 -0.02 1.36 16 37 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.71 7.80 -2.39 -0.02 1.69 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H -0.01 -0.59 8.06 -2.39 -0.02 -0.61 16 42 H 0.03 1.81 6.92 -2.38 -0.02 1.79 16 43 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -83.95 349.11 1.21 -82.74 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 0.23 Total: 6.03 kcal Atomic # 6 Polarization: 20.18 SS G_CDS: 5.87 Total: 26.04 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -6.81 Total: -121.73 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.10 Total: -40.92 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -83.95 1.21 -82.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028079764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.964 kcal (2) G-P(sol) polarization free energy of solvation -83.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds