Wall clock time and date at job start Tue Mar 31 2020 03:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34413 * 124.35463 * 2 1 4 4 O 1.21283 * 124.94031 * 359.62849 * 3 2 1 5 5 C 1.51281 * 110.11648 * 179.59595 * 3 2 1 6 6 C 1.54619 * 104.19775 * 343.74848 * 5 3 2 7 7 C 1.46768 * 124.34381 * 180.02562 * 2 1 3 8 8 H 1.09000 * 110.25007 * 78.01166 * 7 2 1 9 9 C 1.50696 * 110.24547 * 316.00741 * 7 2 1 10 10 O 1.21286 * 120.00245 * 343.96078 * 9 7 2 11 11 N 1.34774 * 119.99793 * 163.95499 * 9 7 2 12 12 C 1.46504 * 119.99936 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47358 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.64165 * 305.70141 * 13 12 11 15 15 C 1.55153 * 110.72384 * 182.55898 * 13 12 11 16 16 C 1.54913 * 101.58463 * 206.13253 * 15 13 12 17 17 N 1.47428 * 104.83055 * 37.01120 * 16 15 13 18 18 C 1.36931 * 125.64990 * 155.91134 * 17 16 15 19 19 H 1.07998 * 120.00071 * 179.97438 * 18 17 16 20 20 C 1.38804 * 119.99866 * 359.97046 * 18 17 16 21 21 N 1.31616 * 120.00353 * 0.02562 * 20 18 17 22 22 Si 1.86811 * 120.00002 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46649 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47419 * 120.00018 * 22 20 18 25 25 H 1.48498 * 109.46678 * 240.00273 * 22 20 18 26 26 C 1.47324 * 108.73457 * 335.71392 * 17 16 15 27 27 H 1.09000 * 109.47056 * 270.00244 * 1 2 3 28 28 H 1.09002 * 109.46847 * 29.99341 * 1 2 3 29 29 H 1.08995 * 109.47674 * 149.99854 * 1 2 3 30 30 H 1.09007 * 110.48265 * 225.06772 * 5 3 2 31 31 H 1.09005 * 110.48391 * 102.43228 * 5 3 2 32 32 H 1.08996 * 110.97085 * 266.68176 * 6 5 3 33 33 H 1.08996 * 111.00482 * 142.92993 * 6 5 3 34 34 H 0.96998 * 120.00710 * 359.97438 * 11 9 7 35 35 H 1.09001 * 109.47243 * 299.99721 * 12 11 9 36 36 H 1.09007 * 109.47366 * 59.99984 * 12 11 9 37 37 H 1.09005 * 111.00264 * 324.20839 * 15 13 12 38 38 H 1.09006 * 111.00728 * 88.05836 * 15 13 12 39 39 H 1.09001 * 110.36785 * 155.84365 * 16 15 13 40 40 H 1.08995 * 110.36585 * 278.17050 * 16 15 13 41 41 H 0.97002 * 120.00328 * 179.97438 * 21 20 18 42 42 H 1.08999 * 110.06597 * 241.87286 * 26 17 16 43 43 H 1.08999 * 109.84873 * 120.60954 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2441 -0.0064 5 6 3.6898 0.7376 0.0100 6 6 3.7010 -0.7488 0.4355 7 6 2.2930 -1.2118 -0.0005 8 1 2.3304 -1.6427 -1.0011 9 6 1.7473 -2.2167 0.9810 10 8 0.9524 -1.8673 1.8278 11 7 2.1426 -3.5036 0.9178 12 6 1.6118 -4.4806 1.8717 13 6 2.2177 -5.8557 1.5839 14 1 2.0577 -6.1358 0.5427 15 6 1.6261 -6.9269 2.5377 16 6 2.7687 -7.9722 2.5784 17 7 4.0094 -7.1764 2.5516 18 6 5.2288 -7.5831 3.0234 19 1 6.0811 -6.9231 2.9570 20 6 5.3695 -8.8437 3.5871 21 7 4.3311 -9.6483 3.6676 22 14 7.0330 -9.3984 4.2314 23 1 8.0297 -8.3173 4.0238 24 1 6.9261 -9.7022 5.6810 25 1 7.4655 -10.6168 3.5008 26 6 3.7219 -5.8725 1.9289 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5138 30 1 4.2327 1.3457 0.7337 31 1 4.1194 0.8529 -0.9852 32 1 3.8268 -0.8450 1.5139 33 1 4.4753 -1.3017 -0.0964 34 1 2.7781 -3.7831 0.2404 35 1 1.8696 -4.1754 2.8859 36 1 0.5275 -4.5330 1.7727 37 1 1.4427 -6.5098 3.5280 38 1 0.7156 -7.3593 2.1229 39 1 2.7140 -8.5586 3.4957 40 1 2.7174 -8.6244 1.7066 41 1 4.4295 -10.5294 4.0612 42 1 4.3120 -5.7538 1.0201 43 1 3.9505 -5.0694 2.6294 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028748920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:53 Heat of formation + Delta-G solvation = -40.835947 kcal Electronic energy + Delta-G solvation = -23931.395143 eV Core-core repulsion = 20398.305102 eV Total energy + Delta-G solvation = -3533.090041 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.13943 -39.33606 -37.74292 -36.40162 -34.82333 -33.12015 -32.53889 -30.13505 -28.98970 -27.83132 -26.87531 -25.53536 -23.75764 -22.70188 -20.99261 -20.14975 -19.92949 -19.45793 -17.85970 -17.12712 -16.88046 -16.32822 -15.91028 -15.60471 -15.02803 -14.80092 -14.63788 -14.18526 -13.87773 -13.75149 -13.62478 -13.18714 -12.83744 -12.76328 -12.58325 -12.34709 -12.14204 -11.85410 -11.77124 -11.57963 -11.49763 -11.00407 -10.86606 -10.54015 -10.26764 -10.15118 -10.07354 -10.02594 -9.85360 -9.59251 -9.14210 -8.91750 -8.70955 -6.89766 -5.71080 -3.13019 2.26849 2.33807 2.61926 3.09947 3.35776 3.41230 3.43799 3.93917 4.02816 4.35251 4.43831 4.54092 4.66725 4.93436 5.03613 5.05147 5.16254 5.29759 5.31938 5.37051 5.42805 5.46443 5.54067 5.61155 5.69743 5.79546 5.96980 6.01259 6.11413 6.26349 6.29437 6.46489 6.51048 6.62938 6.77497 6.82013 7.34532 7.45041 7.56915 7.79814 7.86861 8.03660 8.30540 9.16294 9.77184 10.41517 11.32949 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.002952 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.320977 B = 9483.821777 C =10281.487561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.601 5.601 3 C 0.519 3.481 4 O -0.532 6.532 5 C -0.153 4.153 6 C -0.122 4.122 7 C 0.112 3.888 8 H 0.105 0.895 9 C 0.503 3.497 10 O -0.529 6.529 11 N -0.719 5.719 12 C 0.133 3.867 13 C -0.115 4.115 14 H 0.076 0.924 15 C -0.135 4.135 16 C 0.152 3.848 17 N -0.605 5.605 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.141 3.859 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.403 0.597 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.012 0.988 41 H 0.252 0.748 42 H 0.019 0.981 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 14.402 -10.087 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.335 5.335 3 C 0.307 3.693 4 O -0.408 6.408 5 C -0.193 4.193 6 C -0.160 4.160 7 C 0.004 3.996 8 H 0.123 0.877 9 C 0.287 3.713 10 O -0.405 6.405 11 N -0.370 5.370 12 C 0.009 3.991 13 C -0.134 4.134 14 H 0.095 0.905 15 C -0.175 4.175 16 C 0.027 3.973 17 N -0.331 5.331 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.570 5.570 22 Si 0.745 3.255 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.015 3.985 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.237 0.763 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.177 15.073 -9.362 18.483 hybrid contribution 1.113 -0.706 -0.081 1.320 sum -4.065 14.367 -9.443 17.666 Atomic orbital electron populations 1.21562 0.77283 1.02249 1.02966 1.47855 1.06824 1.05742 1.73094 1.20853 0.89281 0.84139 0.75055 1.90730 1.78757 1.20837 1.50520 1.22364 0.94732 0.97091 1.05109 1.22626 0.94013 0.95555 1.03804 1.21685 0.91990 0.86368 0.99551 0.87692 1.20585 0.82090 0.83071 0.85531 1.90734 1.33940 1.79085 1.36777 1.46065 1.47003 1.08179 1.35767 1.21498 0.97997 0.86921 0.92648 1.22453 0.97257 0.93327 1.00380 0.90549 1.23009 0.99313 0.97171 0.97962 1.21934 0.81661 0.91128 1.02573 1.44586 1.06927 1.11964 1.69642 1.19112 0.85934 0.98418 1.31718 0.90464 1.24794 0.97814 0.96575 1.01498 1.69800 1.27811 1.08939 1.50493 0.86004 0.82822 0.78324 0.78372 1.20516 1.21699 1.21743 1.21384 0.91611 0.90120 0.95367 0.91338 0.90911 0.91444 0.87493 0.87310 0.89119 0.87784 0.76279 0.91104 0.91557 0.91830 0.92105 0.87517 0.96999 0.93732 0.96341 0.95753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 9.56 59.85 0.57 1.61 16 2 N -0.60 -6.38 3.01 -174.02 -0.52 -6.90 16 3 C 0.52 6.00 8.02 -10.86 -0.09 5.91 16 4 O -0.53 -8.23 17.59 5.56 0.10 -8.13 16 5 C -0.15 -1.10 6.86 -26.75 -0.18 -1.28 16 6 C -0.12 -0.79 6.67 -25.09 -0.17 -0.96 16 7 C 0.11 0.92 3.71 -68.15 -0.25 0.67 16 8 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 9 C 0.50 5.66 6.73 -10.99 -0.07 5.58 16 10 O -0.53 -8.09 14.94 5.55 0.08 -8.01 16 11 N -0.72 -7.48 5.43 -60.29 -0.33 -7.80 16 12 C 0.13 1.72 5.00 -4.04 -0.02 1.70 16 13 C -0.11 -1.72 2.98 -88.79 -0.26 -1.99 16 14 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 15 C -0.14 -2.36 6.54 -24.58 -0.16 -2.52 16 16 C 0.15 3.51 5.89 -2.53 -0.01 3.50 16 17 N -0.60 -14.78 3.40 -169.83 -0.58 -15.35 16 18 C -0.22 -6.03 10.28 -15.06 -0.15 -6.19 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -26.26 10.09 55.49 0.56 -25.70 16 22 Si 0.91 21.54 29.55 -169.99 -5.02 16.51 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.14 2.64 6.67 -2.90 -0.02 2.62 16 27 H 0.07 0.82 7.46 -51.93 -0.39 0.43 16 28 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.71 7.91 -51.93 -0.41 0.30 16 33 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.40 3.24 8.40 -40.82 -0.34 2.90 16 35 H 0.07 1.05 8.00 -51.93 -0.42 0.64 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.11 2.82 5.88 -51.93 -0.31 2.52 16 40 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.46 7.73 -51.93 -0.40 0.06 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -34.45 348.63 -8.25 -42.69 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.87 Total: -0.83 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -0.92 Total: 8.27 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.87 Total: -55.76 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.18 Total: -16.13 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.45 -8.25 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028748920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.856 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds