Wall clock time and date at job start Tue Mar 31 2020 03:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34413 * 124.35463 * 2 1 4 4 O 1.21283 * 124.94031 * 359.62849 * 3 2 1 5 5 C 1.51281 * 110.11648 * 179.59595 * 3 2 1 6 6 C 1.54619 * 104.19775 * 343.74848 * 5 3 2 7 7 C 1.46768 * 124.34381 * 180.02562 * 2 1 3 8 8 H 1.09000 * 110.25007 * 78.01166 * 7 2 1 9 9 C 1.50696 * 110.24547 * 316.00741 * 7 2 1 10 10 O 1.21286 * 120.00245 * 343.96078 * 9 7 2 11 11 N 1.34774 * 119.99793 * 163.95499 * 9 7 2 12 12 C 1.46504 * 119.99936 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47358 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.64165 * 305.70141 * 13 12 11 15 15 C 1.55153 * 110.72384 * 182.55898 * 13 12 11 16 16 C 1.54913 * 101.58463 * 206.13253 * 15 13 12 17 17 N 1.47428 * 104.83055 * 37.01120 * 16 15 13 18 18 C 1.36931 * 125.64990 * 155.91134 * 17 16 15 19 19 H 1.07998 * 120.00071 * 179.97438 * 18 17 16 20 20 C 1.38804 * 119.99866 * 359.97046 * 18 17 16 21 21 N 1.31616 * 120.00353 * 0.02562 * 20 18 17 22 22 Si 1.86811 * 120.00002 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46649 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47419 * 120.00018 * 22 20 18 25 25 H 1.48498 * 109.46678 * 240.00273 * 22 20 18 26 26 C 1.47324 * 108.73457 * 335.71392 * 17 16 15 27 27 H 1.09000 * 109.47056 * 270.00244 * 1 2 3 28 28 H 1.09002 * 109.46847 * 29.99341 * 1 2 3 29 29 H 1.08995 * 109.47674 * 149.99854 * 1 2 3 30 30 H 1.09007 * 110.48265 * 225.06772 * 5 3 2 31 31 H 1.09005 * 110.48391 * 102.43228 * 5 3 2 32 32 H 1.08996 * 110.97085 * 266.68176 * 6 5 3 33 33 H 1.08996 * 111.00482 * 142.92993 * 6 5 3 34 34 H 0.96998 * 120.00710 * 359.97438 * 11 9 7 35 35 H 1.09001 * 109.47243 * 299.99721 * 12 11 9 36 36 H 1.09007 * 109.47366 * 59.99984 * 12 11 9 37 37 H 1.09005 * 111.00264 * 324.20839 * 15 13 12 38 38 H 1.09006 * 111.00728 * 88.05836 * 15 13 12 39 39 H 1.09001 * 110.36785 * 155.84365 * 16 15 13 40 40 H 1.08995 * 110.36585 * 278.17050 * 16 15 13 41 41 H 0.97002 * 120.00328 * 179.97438 * 21 20 18 42 42 H 1.08999 * 110.06597 * 241.87286 * 26 17 16 43 43 H 1.08999 * 109.84873 * 120.60954 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2441 -0.0064 5 6 3.6898 0.7376 0.0100 6 6 3.7010 -0.7488 0.4355 7 6 2.2930 -1.2118 -0.0005 8 1 2.3304 -1.6427 -1.0011 9 6 1.7473 -2.2167 0.9810 10 8 0.9524 -1.8673 1.8278 11 7 2.1426 -3.5036 0.9178 12 6 1.6118 -4.4806 1.8717 13 6 2.2177 -5.8557 1.5839 14 1 2.0577 -6.1358 0.5427 15 6 1.6261 -6.9269 2.5377 16 6 2.7687 -7.9722 2.5784 17 7 4.0094 -7.1764 2.5516 18 6 5.2288 -7.5831 3.0234 19 1 6.0811 -6.9231 2.9570 20 6 5.3695 -8.8437 3.5871 21 7 4.3311 -9.6483 3.6676 22 14 7.0330 -9.3984 4.2314 23 1 8.0297 -8.3173 4.0238 24 1 6.9261 -9.7022 5.6810 25 1 7.4655 -10.6168 3.5008 26 6 3.7219 -5.8725 1.9289 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5138 30 1 4.2327 1.3457 0.7337 31 1 4.1194 0.8529 -0.9852 32 1 3.8268 -0.8450 1.5139 33 1 4.4753 -1.3017 -0.0964 34 1 2.7781 -3.7831 0.2404 35 1 1.8696 -4.1754 2.8859 36 1 0.5275 -4.5330 1.7727 37 1 1.4427 -6.5098 3.5280 38 1 0.7156 -7.3593 2.1229 39 1 2.7140 -8.5586 3.4957 40 1 2.7174 -8.6244 1.7066 41 1 4.4295 -10.5294 4.0612 42 1 4.3120 -5.7538 1.0201 43 1 3.9505 -5.0694 2.6294 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028748920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:52 Heat of formation + Delta-G solvation = -65.804661 kcal Electronic energy + Delta-G solvation = -23932.477867 eV Core-core repulsion = 20398.305102 eV Total energy + Delta-G solvation = -3534.172765 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.94311 -40.32201 -39.18618 -37.32365 -36.05452 -34.37199 -33.68163 -31.71257 -30.28431 -28.99792 -27.63434 -27.15517 -25.18157 -23.46153 -22.21954 -21.52816 -21.16664 -20.39679 -18.94959 -18.51546 -17.89338 -17.31873 -16.90556 -16.78110 -16.54590 -15.95627 -15.80186 -15.48747 -14.83735 -14.76499 -14.60190 -14.29846 -14.22705 -13.65533 -13.51586 -13.49848 -13.34349 -13.15180 -13.07618 -12.82955 -12.75802 -12.67947 -12.06227 -11.95889 -11.86026 -11.79119 -11.55273 -11.35553 -11.10426 -10.90767 -10.72653 -10.10881 -9.76611 -8.84705 -7.75340 -5.18794 1.42342 1.48526 1.49105 1.49793 1.59118 1.84297 2.26849 2.51474 3.27889 3.35066 3.41042 3.64519 3.72405 3.86911 4.00184 4.02670 4.06327 4.12284 4.30820 4.40065 4.49345 4.60711 4.67936 4.73657 4.83096 4.83798 4.86606 4.96085 4.98782 5.04839 5.09750 5.16270 5.34261 5.37381 5.45933 5.52204 5.68948 5.85834 5.99401 6.34660 6.53414 7.03232 7.13889 7.20768 7.82472 8.45367 9.26781 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.002952 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.320977 B = 9483.821777 C =10281.487561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.607 5.607 3 C 0.504 3.496 4 O -0.583 6.583 5 C -0.142 4.142 6 C -0.115 4.115 7 C 0.114 3.886 8 H 0.147 0.853 9 C 0.504 3.496 10 O -0.575 6.575 11 N -0.706 5.706 12 C 0.145 3.855 13 C -0.093 4.093 14 H 0.100 0.900 15 C -0.124 4.124 16 C 0.152 3.848 17 N -0.630 5.630 18 C -0.234 4.234 19 H 0.083 0.917 20 C -0.070 4.070 21 N -0.950 5.950 22 Si 0.977 3.023 23 H -0.265 1.265 24 H -0.295 1.295 25 H -0.293 1.293 26 C 0.137 3.863 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.139 0.861 32 H 0.074 0.926 33 H 0.144 0.856 34 H 0.419 0.581 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.067 0.933 40 H -0.010 1.010 41 H 0.245 0.755 42 H 0.037 0.963 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 15.066 -12.020 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.339 5.339 3 C 0.294 3.706 4 O -0.464 6.464 5 C -0.182 4.182 6 C -0.153 4.153 7 C 0.007 3.993 8 H 0.165 0.835 9 C 0.290 3.710 10 O -0.454 6.454 11 N -0.359 5.359 12 C 0.021 3.979 13 C -0.112 4.112 14 H 0.118 0.882 15 C -0.163 4.163 16 C 0.027 3.973 17 N -0.356 5.356 18 C -0.363 4.363 19 H 0.101 0.899 20 C -0.263 4.263 21 N -0.601 5.601 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.222 1.222 25 H -0.221 1.221 26 C 0.012 3.988 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.157 0.843 32 H 0.093 0.907 33 H 0.162 0.838 34 H 0.256 0.744 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.008 0.992 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.987 15.733 -11.333 19.796 hybrid contribution 0.723 -0.910 0.529 1.277 sum -3.264 14.823 -10.804 18.630 Atomic orbital electron populations 1.21514 0.77831 1.03061 1.01702 1.48073 1.07008 1.06649 1.72202 1.21707 0.91325 0.83547 0.73977 1.90695 1.79997 1.22806 1.52878 1.22411 0.91376 0.97401 1.07010 1.22728 0.93795 0.95328 1.03405 1.21980 0.92062 0.84675 1.00602 0.83523 1.21114 0.81208 0.83410 0.85284 1.90733 1.36089 1.79805 1.38766 1.45872 1.46981 1.07577 1.35429 1.21170 0.98255 0.86193 0.92265 1.22287 0.94359 0.93680 1.00870 0.88185 1.22843 0.98258 0.96312 0.98918 1.21710 0.83735 0.92293 0.99607 1.44917 1.06532 1.14073 1.70105 1.19500 0.87287 0.98503 1.30986 0.89943 1.25611 1.01044 0.97060 1.02542 1.70064 1.29521 1.08880 1.51602 0.85025 0.79432 0.77895 0.77094 1.18883 1.22231 1.22055 1.21594 0.94368 0.87351 0.95462 0.93665 0.91098 0.89619 0.87092 0.84310 0.90713 0.83837 0.74418 0.93143 0.90855 0.92235 0.89414 0.91468 0.99159 0.94494 0.94541 0.95902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.04 9.56 127.77 1.22 3.26 16 2 N -0.61 -11.86 3.01 -823.06 -2.48 -14.34 16 3 C 0.50 11.07 8.02 87.90 0.71 11.77 16 4 O -0.58 -18.22 17.59 -3.04 -0.05 -18.28 16 5 C -0.14 -1.59 6.86 30.58 0.21 -1.38 16 6 C -0.11 -1.04 6.67 31.65 0.21 -0.82 16 7 C 0.11 1.46 3.71 44.70 0.17 1.63 16 8 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 9 C 0.50 9.99 6.73 87.66 0.59 10.58 16 10 O -0.57 -16.98 14.94 -3.05 -0.05 -17.02 16 11 N -0.71 -12.17 5.43 -463.05 -2.51 -14.68 16 12 C 0.15 3.38 5.00 86.38 0.43 3.81 16 13 C -0.09 -2.51 2.98 -9.61 -0.03 -2.54 16 14 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.12 -4.15 6.54 31.99 0.21 -3.94 16 16 C 0.15 7.09 5.89 86.86 0.51 7.60 16 17 N -0.63 -30.52 3.40 -691.22 -2.35 -32.87 16 18 C -0.23 -12.57 10.28 84.03 0.86 -11.71 16 19 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 20 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 21 N -0.95 -55.66 10.09 21.65 0.22 -55.44 16 22 Si 0.98 44.54 29.55 68.60 2.03 46.56 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 24 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 26 C 0.14 4.81 6.67 86.67 0.58 5.39 16 27 H 0.04 1.12 7.46 -2.39 -0.02 1.10 16 28 H 0.07 1.42 7.92 -2.39 -0.02 1.40 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.14 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 0.96 7.91 -2.39 -0.02 0.94 16 33 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.42 4.70 8.40 -92.71 -0.78 3.92 16 35 H 0.05 1.42 8.00 -2.39 -0.02 1.40 16 36 H 0.07 1.67 8.14 -2.38 -0.02 1.66 16 37 H 0.06 2.03 8.05 -2.38 -0.02 2.02 16 38 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.07 3.69 5.88 -2.39 -0.01 3.67 16 40 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 43 H 0.02 0.82 7.73 -2.39 -0.02 0.80 16 Total: -1.00 -79.15 348.63 1.17 -77.99 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.23 Total: 7.87 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 6.13 Total: 20.21 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -7.12 Total: -117.33 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.10 Total: -35.30 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -79.15 1.17 -77.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028748920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.183 kcal (2) G-P(sol) polarization free energy of solvation -79.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds