Wall clock time and date at job start Tue Mar 31 2020 03:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47010 * 111.00249 * 2 1 4 4 C 1.53096 * 109.25719 * 182.39594 * 3 2 1 5 5 O 1.43015 * 109.25414 * 303.14871 * 4 3 2 6 6 C 1.43007 * 113.74190 * 58.67770 * 5 4 3 7 7 C 1.47009 * 110.99862 * 123.63633 * 2 1 3 8 8 H 1.08997 * 109.54508 * 297.56420 * 7 2 1 9 9 C 1.50701 * 109.50850 * 57.67003 * 7 2 1 10 10 O 1.21286 * 119.99958 * 28.26976 * 9 7 2 11 11 N 1.34774 * 120.00482 * 208.26635 * 9 7 2 12 12 C 1.49959 * 126.74179 * 355.29898 * 11 9 7 13 13 C 1.56016 * 104.10299 * 182.13111 * 12 11 9 14 14 H 1.09003 * 116.24799 * 159.11528 * 13 12 11 15 15 C 1.57082 * 100.41630 * 32.48868 * 13 12 11 16 16 C 1.49286 * 126.94960 * 174.93920 * 11 9 7 17 17 H 1.09010 * 116.14984 * 15.84991 * 16 11 9 18 18 C 1.56011 * 104.09629 * 246.70185 * 16 11 9 19 19 N 1.47867 * 105.10636 * 288.76842 * 18 16 11 20 20 C 1.36940 * 126.94710 * 182.03943 * 19 18 16 21 21 H 1.07999 * 119.99967 * 179.97438 * 20 19 18 22 22 C 1.38812 * 119.99901 * 359.96815 * 20 19 18 23 23 N 1.31615 * 119.99922 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99928 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47107 * 90.00103 * 24 22 20 26 26 H 1.48497 * 109.47478 * 210.00212 * 24 22 20 27 27 H 1.48505 * 109.47296 * 330.00484 * 24 22 20 28 28 H 1.08999 * 109.46899 * 300.67155 * 1 2 3 29 29 H 1.09005 * 109.46717 * 60.67027 * 1 2 3 30 30 H 1.08995 * 109.47087 * 180.66890 * 1 2 3 31 31 H 1.08996 * 109.50552 * 62.45398 * 3 2 1 32 32 H 1.09003 * 109.50481 * 302.32512 * 3 2 1 33 33 H 1.09006 * 109.50455 * 183.21650 * 4 3 2 34 34 H 1.08990 * 109.51024 * 63.08692 * 4 3 2 35 35 H 1.08997 * 109.51124 * 181.39260 * 6 5 4 36 36 H 1.09001 * 109.51005 * 61.25431 * 6 5 4 37 37 H 1.09004 * 111.27793 * 63.31910 * 12 11 9 38 38 H 1.09002 * 110.40383 * 300.51921 * 12 11 9 39 39 H 1.09006 * 112.36796 * 191.50830 * 15 13 12 40 40 H 1.08998 * 112.36811 * 64.06533 * 15 13 12 41 41 H 1.08999 * 110.31496 * 47.67502 * 18 16 11 42 42 H 1.08999 * 110.31638 * 169.75885 * 18 16 11 43 43 H 0.97003 * 119.99710 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 -0.0604 5 8 4.0175 0.5572 1.0402 6 6 3.5250 -0.7850 1.0709 7 6 1.9958 -0.7602 1.1427 8 1 1.6828 -0.2850 2.0723 9 6 1.4670 -2.1706 1.0956 10 8 1.1799 -2.6754 0.0308 11 7 1.3130 -2.8711 2.2367 12 6 1.7089 -2.4367 3.6163 13 6 1.3465 -3.6574 4.5179 14 1 1.8553 -3.7138 5.4802 15 6 1.6089 -4.8383 3.5158 16 6 0.7090 -4.2286 2.3818 17 1 0.6033 -4.8079 1.4644 18 6 -0.5991 -3.9776 3.1940 19 7 -0.1457 -3.6464 4.5620 20 6 -0.9351 -3.3837 5.6497 21 1 -0.4820 -3.1533 6.6026 22 6 -2.3175 -3.4133 5.5275 23 7 -2.8695 -3.6944 4.3662 24 14 -3.3942 -3.0542 7.0110 25 1 -3.6796 -1.5983 7.0748 26 1 -4.6703 -3.8039 6.8897 27 1 -2.6887 -3.4749 8.2482 28 1 -0.3633 0.5242 0.8839 29 1 -0.3633 0.5034 -0.8960 30 1 -0.3633 -1.0276 0.0120 31 1 1.6828 1.8825 0.9109 32 1 1.6135 1.9091 -0.8682 33 1 3.9223 2.3397 -0.0030 34 1 3.8385 0.8643 -0.9965 35 1 3.9222 -1.2986 1.9464 36 1 3.8384 -1.3085 0.1676 37 1 1.1488 -1.5555 3.9295 38 1 2.7799 -2.2388 3.6598 39 1 1.2238 -5.7889 3.8850 40 1 2.6562 -4.9079 3.2219 41 1 -1.1553 -3.1430 2.7673 42 1 -1.2159 -4.8762 3.2053 43 1 -3.8356 -3.7155 4.2809 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032364796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:53 Heat of formation + Delta-G solvation = -0.007455 kcal Electronic energy + Delta-G solvation = -25584.862944 eV Core-core repulsion = 22053.543359 eV Total energy + Delta-G solvation = -3531.319584 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.49803 -39.34906 -37.63578 -35.50842 -33.62891 -32.04454 -30.99844 -29.21088 -28.70169 -28.47067 -25.28724 -24.89372 -24.21103 -23.37744 -21.44473 -20.03679 -19.79459 -18.50484 -17.43050 -16.56396 -16.44550 -16.39527 -15.72807 -15.27613 -14.96244 -14.72861 -14.35412 -14.08601 -13.84030 -13.49422 -13.32947 -13.03228 -12.44913 -12.22718 -12.12726 -11.92846 -11.70243 -11.66893 -11.35431 -11.27778 -11.04558 -10.90050 -10.83675 -10.79632 -10.60918 -10.30452 -10.11668 -9.95128 -9.67864 -9.31260 -8.75222 -8.42063 -8.05362 -6.97838 -5.81377 -3.16053 2.87981 3.16665 3.33862 3.38937 3.41403 3.64048 3.89086 4.37821 4.63808 4.72833 4.86696 4.97990 5.01809 5.10535 5.14635 5.16863 5.32168 5.42513 5.51826 5.53924 5.55491 5.56294 5.58879 5.65150 5.73290 5.81938 5.88563 6.10883 6.11440 6.23545 6.35740 6.43425 6.54640 6.61913 6.78296 6.87722 6.94918 7.37672 7.43127 7.66898 8.00009 8.05683 8.56252 9.05685 9.66581 10.35424 11.30728 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.004679 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.168637 B = 5982.203657 C = 6347.310252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.017 3.983 4 C 0.061 3.939 5 O -0.380 6.380 6 C 0.080 3.920 7 C 0.035 3.965 8 H 0.069 0.931 9 C 0.535 3.465 10 O -0.535 6.535 11 N -0.609 5.609 12 C 0.084 3.916 13 C 0.139 3.861 14 H 0.106 0.894 15 C -0.149 4.149 16 C 0.100 3.900 17 H 0.114 0.886 18 C 0.175 3.825 19 N -0.598 5.598 20 C -0.232 4.232 21 H 0.081 0.919 22 C -0.005 4.005 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.056 0.944 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.081 6.589 -5.901 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.244 5.244 3 C -0.111 4.111 4 C -0.016 4.016 5 O -0.298 6.298 6 C 0.002 3.998 7 C -0.077 4.077 8 H 0.087 0.913 9 C 0.322 3.678 10 O -0.412 6.412 11 N -0.344 5.344 12 C -0.041 4.041 13 C 0.031 3.969 14 H 0.124 0.876 15 C -0.188 4.188 16 C -0.003 4.003 17 H 0.132 0.868 18 C 0.050 3.950 19 N -0.322 5.322 20 C -0.360 4.360 21 H 0.099 0.901 22 C -0.202 4.202 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.206 1.206 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.919 6.231 -6.768 15.057 hybrid contribution -1.350 0.696 1.315 2.009 sum 10.569 6.927 -5.454 13.763 Atomic orbital electron populations 1.22479 0.85892 1.03780 1.00498 1.61985 1.09102 1.12477 1.40882 1.22849 0.96433 0.89784 1.02004 1.22709 0.92305 0.96394 0.90147 1.87995 1.69519 1.23709 1.48617 1.22508 0.89915 0.84150 1.03229 1.22279 0.97489 0.93649 0.94271 0.91340 1.19629 0.78744 0.86441 0.83021 1.90670 1.51361 1.70433 1.28734 1.49790 1.59676 1.18542 1.06383 1.23690 0.97792 1.00699 0.81933 1.23174 0.87301 0.90980 0.95476 0.87639 1.24130 0.98335 0.99342 0.97033 1.24340 0.95962 0.82178 0.97780 0.86776 1.21917 0.89850 1.00212 0.83069 1.45243 0.98374 1.81710 1.06864 1.19050 0.87567 1.41202 0.88202 0.90138 1.24813 0.96573 1.01699 0.97106 1.69915 1.09926 1.54394 1.22375 0.86121 0.80172 0.77746 0.81697 1.21655 1.21643 1.20586 0.95503 0.91036 0.89916 0.93798 0.89226 0.88278 0.92029 0.87971 0.91526 0.90888 0.92557 0.89701 0.91565 0.93662 0.92580 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.25 60.07 0.56 0.88 16 2 N -0.52 -7.68 4.53 -235.97 -1.07 -8.75 16 3 C 0.02 0.20 5.66 -3.71 -0.02 0.18 16 4 C 0.06 0.64 7.01 37.21 0.26 0.90 16 5 O -0.38 -4.91 10.83 -35.23 -0.38 -5.29 16 6 C 0.08 1.06 6.27 37.21 0.23 1.29 16 7 C 0.04 0.54 1.95 -68.75 -0.13 0.41 16 8 H 0.07 1.09 7.41 -51.93 -0.38 0.70 16 9 C 0.54 9.75 5.98 -10.99 -0.07 9.68 16 10 O -0.54 -11.30 15.78 5.55 0.09 -11.22 16 11 N -0.61 -10.99 2.99 -155.07 -0.46 -11.45 16 12 C 0.08 1.38 5.85 -0.50 0.00 1.38 16 13 C 0.14 2.50 5.46 -62.55 -0.34 2.16 16 14 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 15 C -0.15 -2.44 6.82 -22.30 -0.15 -2.60 16 16 C 0.10 1.89 5.25 -62.55 -0.33 1.56 16 17 H 0.11 2.12 8.04 -51.92 -0.42 1.71 16 18 C 0.17 4.10 4.76 -1.68 -0.01 4.10 16 19 N -0.60 -14.03 3.01 -156.34 -0.47 -14.50 16 20 C -0.23 -6.07 10.38 -15.06 -0.16 -6.22 16 21 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 22 C -0.01 -0.14 5.49 -17.43 -0.10 -0.23 16 23 N -0.92 -26.42 10.56 55.49 0.59 -25.83 16 24 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.50 6.12 -51.93 -0.32 1.18 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 1.21 7.63 -51.93 -0.40 0.82 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.34 7.98 -51.93 -0.41 0.92 16 38 H 0.06 0.75 7.63 -51.93 -0.40 0.36 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 1.23 7.68 -51.93 -0.40 0.83 16 42 H 0.06 1.46 7.46 -51.93 -0.39 1.07 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 336.22 15.07 5.07 5.07 Total: -1.00 -31.38 336.22 -8.81 -40.19 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.89 Total: 1.87 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -0.26 Total: 13.48 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -1.42 Total: -60.53 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.29 Total: -16.50 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.38 -8.81 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032364796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.186 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds