Wall clock time and date at job start Tue Mar 31 2020 03:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47010 * 111.00249 * 2 1 4 4 C 1.53096 * 109.25719 * 182.39594 * 3 2 1 5 5 O 1.43015 * 109.25414 * 303.14871 * 4 3 2 6 6 C 1.43007 * 113.74190 * 58.67770 * 5 4 3 7 7 C 1.47009 * 110.99862 * 123.63633 * 2 1 3 8 8 H 1.08997 * 109.54508 * 297.56420 * 7 2 1 9 9 C 1.50701 * 109.50850 * 57.67003 * 7 2 1 10 10 O 1.21286 * 119.99958 * 28.26976 * 9 7 2 11 11 N 1.34774 * 120.00482 * 208.26635 * 9 7 2 12 12 C 1.49959 * 126.74179 * 355.29898 * 11 9 7 13 13 C 1.56016 * 104.10299 * 182.13111 * 12 11 9 14 14 H 1.09003 * 116.24799 * 159.11528 * 13 12 11 15 15 C 1.57082 * 100.41630 * 32.48868 * 13 12 11 16 16 C 1.49286 * 126.94960 * 174.93920 * 11 9 7 17 17 H 1.09010 * 116.14984 * 15.84991 * 16 11 9 18 18 C 1.56011 * 104.09629 * 246.70185 * 16 11 9 19 19 N 1.47867 * 105.10636 * 288.76842 * 18 16 11 20 20 C 1.36940 * 126.94710 * 182.03943 * 19 18 16 21 21 H 1.07999 * 119.99967 * 179.97438 * 20 19 18 22 22 C 1.38812 * 119.99901 * 359.96815 * 20 19 18 23 23 N 1.31615 * 119.99922 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99928 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47107 * 90.00103 * 24 22 20 26 26 H 1.48497 * 109.47478 * 210.00212 * 24 22 20 27 27 H 1.48505 * 109.47296 * 330.00484 * 24 22 20 28 28 H 1.08999 * 109.46899 * 300.67155 * 1 2 3 29 29 H 1.09005 * 109.46717 * 60.67027 * 1 2 3 30 30 H 1.08995 * 109.47087 * 180.66890 * 1 2 3 31 31 H 1.08996 * 109.50552 * 62.45398 * 3 2 1 32 32 H 1.09003 * 109.50481 * 302.32512 * 3 2 1 33 33 H 1.09006 * 109.50455 * 183.21650 * 4 3 2 34 34 H 1.08990 * 109.51024 * 63.08692 * 4 3 2 35 35 H 1.08997 * 109.51124 * 181.39260 * 6 5 4 36 36 H 1.09001 * 109.51005 * 61.25431 * 6 5 4 37 37 H 1.09004 * 111.27793 * 63.31910 * 12 11 9 38 38 H 1.09002 * 110.40383 * 300.51921 * 12 11 9 39 39 H 1.09006 * 112.36796 * 191.50830 * 15 13 12 40 40 H 1.08998 * 112.36811 * 64.06533 * 15 13 12 41 41 H 1.08999 * 110.31496 * 47.67502 * 18 16 11 42 42 H 1.08999 * 110.31638 * 169.75885 * 18 16 11 43 43 H 0.97003 * 119.99710 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 -0.0604 5 8 4.0175 0.5572 1.0402 6 6 3.5250 -0.7850 1.0709 7 6 1.9958 -0.7602 1.1427 8 1 1.6828 -0.2850 2.0723 9 6 1.4670 -2.1706 1.0956 10 8 1.1799 -2.6754 0.0308 11 7 1.3130 -2.8711 2.2367 12 6 1.7089 -2.4367 3.6163 13 6 1.3465 -3.6574 4.5179 14 1 1.8553 -3.7138 5.4802 15 6 1.6089 -4.8383 3.5158 16 6 0.7090 -4.2286 2.3818 17 1 0.6033 -4.8079 1.4644 18 6 -0.5991 -3.9776 3.1940 19 7 -0.1457 -3.6464 4.5620 20 6 -0.9351 -3.3837 5.6497 21 1 -0.4820 -3.1533 6.6026 22 6 -2.3175 -3.4133 5.5275 23 7 -2.8695 -3.6944 4.3662 24 14 -3.3942 -3.0542 7.0110 25 1 -3.6796 -1.5983 7.0748 26 1 -4.6703 -3.8039 6.8897 27 1 -2.6887 -3.4749 8.2482 28 1 -0.3633 0.5242 0.8839 29 1 -0.3633 0.5034 -0.8960 30 1 -0.3633 -1.0276 0.0120 31 1 1.6828 1.8825 0.9109 32 1 1.6135 1.9091 -0.8682 33 1 3.9223 2.3397 -0.0030 34 1 3.8385 0.8643 -0.9965 35 1 3.9222 -1.2986 1.9464 36 1 3.8384 -1.3085 0.1676 37 1 1.1488 -1.5555 3.9295 38 1 2.7799 -2.2388 3.6598 39 1 1.2238 -5.7889 3.8850 40 1 2.6562 -4.9079 3.2219 41 1 -1.1553 -3.1430 2.7673 42 1 -1.2159 -4.8762 3.2053 43 1 -3.8356 -3.7155 4.2809 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032364796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:52 Heat of formation + Delta-G solvation = -23.026968 kcal Electronic energy + Delta-G solvation = -25585.861145 eV Core-core repulsion = 22053.543359 eV Total energy + Delta-G solvation = -3532.317785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.84871 -40.63963 -39.02527 -36.62323 -35.43636 -33.56673 -32.33310 -30.70380 -30.27242 -29.76278 -26.99820 -26.14779 -25.31691 -24.93933 -22.74716 -21.41695 -21.28513 -20.04748 -18.98663 -18.10013 -17.62642 -17.60819 -17.13060 -16.49196 -16.26296 -16.05058 -15.82623 -15.71145 -15.01581 -14.93565 -14.76872 -14.34094 -13.85379 -13.62629 -13.47385 -13.31684 -13.29739 -13.10094 -12.82779 -12.74077 -12.71569 -12.35106 -12.29874 -12.13607 -12.06068 -11.89716 -11.74777 -11.53460 -11.07493 -10.80986 -10.58659 -9.59072 -9.55592 -8.92807 -7.86113 -5.21731 1.45641 1.45888 1.47188 1.55590 1.81453 2.47141 2.61194 2.83941 3.30145 3.33558 3.50067 3.66422 3.77452 3.86161 3.89002 3.90465 4.02312 4.13028 4.19598 4.21279 4.36450 4.41833 4.49942 4.57535 4.61512 4.68245 4.76351 4.80984 4.85194 4.90229 4.92515 5.01827 5.12550 5.23169 5.43166 5.47905 5.62061 5.65372 5.82338 6.00741 6.08414 6.57053 7.01653 7.11695 7.69689 8.40001 9.25097 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.004679 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.168637 B = 5982.203657 C = 6347.310252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.532 5.532 3 C 0.016 3.984 4 C 0.059 3.941 5 O -0.387 6.387 6 C 0.087 3.913 7 C 0.041 3.959 8 H 0.063 0.937 9 C 0.533 3.467 10 O -0.570 6.570 11 N -0.612 5.612 12 C 0.091 3.909 13 C 0.134 3.866 14 H 0.136 0.864 15 C -0.125 4.125 16 C 0.103 3.897 17 H 0.114 0.886 18 C 0.189 3.811 19 N -0.617 5.617 20 C -0.229 4.229 21 H 0.096 0.904 22 C -0.070 4.070 23 N -0.958 5.958 24 Si 0.975 3.025 25 H -0.292 1.292 26 H -0.301 1.301 27 H -0.261 1.261 28 H 0.022 0.978 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.105 0.895 41 H -0.006 1.006 42 H 0.018 0.982 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.243 7.769 -5.033 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.258 5.258 3 C -0.111 4.111 4 C -0.018 4.018 5 O -0.305 6.305 6 C 0.009 3.991 7 C -0.071 4.071 8 H 0.081 0.919 9 C 0.321 3.679 10 O -0.449 6.449 11 N -0.346 5.346 12 C -0.032 4.032 13 C 0.028 3.972 14 H 0.154 0.846 15 C -0.165 4.165 16 C 0.000 4.000 17 H 0.132 0.868 18 C 0.062 3.938 19 N -0.342 5.342 20 C -0.358 4.358 21 H 0.114 0.886 22 C -0.263 4.263 23 N -0.607 5.607 24 Si 0.804 3.196 25 H -0.219 1.219 26 H -0.229 1.229 27 H -0.186 1.186 28 H 0.041 0.959 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.012 0.988 42 H 0.036 0.964 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 15.153 7.431 -5.869 17.868 hybrid contribution -2.311 0.374 0.998 2.545 sum 12.842 7.805 -4.870 15.797 Atomic orbital electron populations 1.22363 0.86762 1.01483 1.01426 1.62027 1.08498 1.14623 1.40672 1.23007 0.97283 0.87823 1.02968 1.22945 0.91382 0.97770 0.89672 1.87993 1.69454 1.23444 1.49601 1.22486 0.87890 0.84784 1.03911 1.22259 0.99117 0.91425 0.94271 0.91935 1.20190 0.77973 0.87369 0.82395 1.90645 1.52858 1.71365 1.30056 1.49858 1.59335 1.18174 1.07213 1.23626 1.00218 0.98960 0.80440 1.23606 0.83902 0.92157 0.97544 0.84641 1.24036 0.99704 0.98251 0.94467 1.24157 0.94267 0.83492 0.98120 0.86832 1.21503 0.91486 0.96423 0.84339 1.45501 1.01189 1.81483 1.05994 1.19544 0.88037 1.38826 0.89417 0.88633 1.25637 0.98245 1.02945 0.99452 1.70159 1.09202 1.56811 1.24523 0.85114 0.78052 0.76962 0.79439 1.21896 1.22852 1.18579 0.95920 0.88809 0.93722 0.93914 0.87053 0.85139 0.91668 0.86174 0.91959 0.92985 0.87706 0.89988 0.87624 0.98812 0.96399 0.94757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.25 127.69 1.18 2.03 16 2 N -0.53 -15.25 4.53 -900.48 -4.08 -19.33 16 3 C 0.02 0.34 5.66 86.31 0.49 0.83 16 4 C 0.06 1.04 7.01 72.01 0.50 1.54 16 5 O -0.39 -8.74 10.83 -148.98 -1.61 -10.35 16 6 C 0.09 2.08 6.27 72.02 0.45 2.53 16 7 C 0.04 1.23 1.95 44.18 0.09 1.31 16 8 H 0.06 1.92 7.41 -2.39 -0.02 1.90 16 9 C 0.53 19.32 5.98 87.66 0.52 19.85 16 10 O -0.57 -24.56 15.78 -3.05 -0.05 -24.61 16 11 N -0.61 -21.66 2.99 -762.91 -2.28 -23.94 16 12 C 0.09 2.79 5.85 86.75 0.51 3.30 16 13 C 0.13 4.47 5.46 46.93 0.26 4.73 16 14 H 0.14 3.75 8.14 -2.39 -0.02 3.73 16 15 C -0.13 -3.79 6.82 33.47 0.23 -3.56 16 16 C 0.10 3.91 5.25 46.93 0.25 4.16 16 17 H 0.11 4.33 8.04 -2.38 -0.02 4.31 16 18 C 0.19 9.32 4.76 87.16 0.42 9.74 16 19 N -0.62 -29.12 3.01 -648.55 -1.95 -31.07 16 20 C -0.23 -12.01 10.38 84.03 0.87 -11.13 16 21 H 0.10 4.61 7.83 -2.91 -0.02 4.58 16 22 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 23 N -0.96 -58.08 10.56 21.65 0.23 -57.86 16 24 Si 0.98 44.94 29.55 68.60 2.03 46.97 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 28 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.04 1.71 6.12 -2.39 -0.01 1.69 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.13 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.12 2.38 7.63 -2.39 -0.02 2.36 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 37 H 0.05 1.84 7.98 -2.38 -0.02 1.83 16 38 H 0.11 2.28 7.63 -2.39 -0.02 2.27 16 39 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 40 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 41 H -0.01 -0.37 7.68 -2.39 -0.02 -0.39 16 42 H 0.02 1.00 7.46 -2.39 -0.02 0.98 16 43 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -72.59 336.22 -0.50 -73.09 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.99 Total: 15.23 kcal Atomic # 6 Polarization: 25.65 SS G_CDS: 6.23 Total: 31.88 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -8.08 Total: -132.20 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.66 Total: -34.96 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -72.59 -0.50 -73.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032364796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.062 kcal (2) G-P(sol) polarization free energy of solvation -72.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds