Wall clock time and date at job start Tue Mar 31 2020 03:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47018 * 111.03043 * 2 1 4 4 C 1.53109 * 109.29181 * 177.65081 * 3 2 1 5 5 O 1.43011 * 109.25708 * 56.82615 * 4 3 2 6 6 C 1.43014 * 113.74255 * 301.33500 * 5 4 3 7 7 C 1.47014 * 111.00325 * 236.34654 * 2 1 3 8 8 H 1.09002 * 109.50306 * 62.40747 * 7 2 1 9 9 C 1.50703 * 109.50701 * 302.32453 * 7 2 1 10 10 O 1.21288 * 119.99332 * 330.23829 * 9 7 2 11 11 N 1.34771 * 120.00471 * 150.23404 * 9 7 2 12 12 C 1.47870 * 126.94255 * 4.93993 * 11 9 7 13 13 C 1.56011 * 105.10680 * 181.97545 * 12 11 9 14 14 H 1.09004 * 116.90121 * 159.20687 * 13 12 11 15 15 C 1.57086 * 99.60581 * 32.80318 * 13 12 11 16 16 C 1.49291 * 126.94713 * 184.90780 * 11 9 7 17 17 H 1.08999 * 116.14801 * 16.72615 * 16 11 9 18 18 C 1.56003 * 104.31611 * 246.64141 * 16 11 9 19 19 N 1.47872 * 105.11253 * 289.11246 * 18 16 11 20 20 C 1.36938 * 126.93876 * 181.88045 * 19 18 16 21 21 H 1.07994 * 119.99801 * 188.77054 * 20 19 18 22 22 C 1.38808 * 120.00312 * 8.76496 * 20 19 18 23 23 N 1.31614 * 120.00353 * 207.99271 * 22 20 19 24 24 Si 1.86800 * 119.99891 * 27.99057 * 22 20 19 25 25 H 1.48504 * 109.47390 * 275.23118 * 24 22 20 26 26 H 1.48497 * 109.47367 * 35.23783 * 24 22 20 27 27 H 1.48507 * 109.47358 * 155.23512 * 24 22 20 28 28 H 1.09002 * 109.46634 * 188.60907 * 1 2 3 29 29 H 1.08998 * 109.47524 * 308.60755 * 1 2 3 30 30 H 1.09003 * 109.47272 * 68.61638 * 1 2 3 31 31 H 1.09002 * 109.50735 * 57.69776 * 3 2 1 32 32 H 1.08993 * 109.51042 * 297.60479 * 3 2 1 33 33 H 1.08997 * 109.50467 * 296.89442 * 4 3 2 34 34 H 1.09000 * 109.53897 * 176.78819 * 4 3 2 35 35 H 1.09004 * 109.50298 * 298.73257 * 6 5 4 36 36 H 1.09000 * 109.54521 * 178.63111 * 6 5 4 37 37 H 1.09007 * 110.31429 * 63.06660 * 12 11 9 38 38 H 1.08996 * 110.31864 * 300.88635 * 12 11 9 39 39 H 1.09008 * 112.36331 * 64.27504 * 15 13 12 40 40 H 1.09000 * 112.37126 * 191.62329 * 15 13 12 41 41 H 1.09002 * 110.41166 * 170.14888 * 18 16 11 42 42 H 1.08999 * 110.19938 * 47.96900 * 18 16 11 43 43 H 0.96998 * 120.00125 * 354.88387 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9966 1.3722 0.0000 4 6 3.5258 1.3262 0.0592 5 8 4.0176 0.5571 -1.0416 6 6 3.5250 -0.7852 -1.0718 7 6 1.9959 -0.7606 -1.1424 8 1 1.6821 -0.2854 -2.0719 9 6 1.4672 -2.1710 -1.0949 10 8 1.2057 -2.6849 -0.0278 11 7 1.2848 -2.8613 -2.2380 12 6 1.6447 -2.4277 -3.6051 13 6 1.1663 -3.5835 -4.5374 14 1 1.0120 -3.3377 -5.5881 15 6 -0.0976 -4.0606 -3.7360 16 6 0.6792 -4.2184 -2.3798 17 1 0.1026 -4.5786 -1.5278 18 6 1.8584 -5.1185 -2.8625 19 7 2.1203 -4.6965 -4.2553 20 6 3.0468 -5.2242 -5.1146 21 1 3.2435 -4.7406 -6.0600 22 6 3.7332 -6.3806 -4.7706 23 7 4.9394 -6.5974 -5.2503 24 14 2.9448 -7.6293 -3.6267 25 1 3.1865 -7.2308 -2.2167 26 1 1.4830 -7.6816 -3.8827 27 1 3.5382 -8.9686 -3.8711 28 1 -0.3633 -1.0161 0.1538 29 1 -0.3634 0.6412 0.8030 30 1 -0.3634 0.3747 -0.9569 31 1 1.6147 1.9090 0.8684 32 1 1.6829 1.8828 -0.9104 33 1 3.8401 0.8643 0.9951 34 1 3.9235 2.3395 0.0019 35 1 3.8393 -1.3086 -0.1688 36 1 3.9217 -1.2996 -1.9472 37 1 2.7236 -2.2959 -3.6886 38 1 1.1291 -1.5008 -3.8562 39 1 -0.8702 -3.2933 -3.6846 40 1 -0.4888 -5.0090 -4.1043 41 1 1.5710 -6.1696 -2.8332 42 1 2.7393 -4.9487 -2.2435 43 1 5.3192 -5.9871 -5.9017 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032364797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:57 Heat of formation + Delta-G solvation = 5.841324 kcal Electronic energy + Delta-G solvation = -25634.261854 eV Core-core repulsion = 22103.195891 eV Total energy + Delta-G solvation = -3531.065962 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.75852 -39.61408 -37.83299 -35.65245 -33.86258 -32.24414 -31.27124 -29.41326 -29.31306 -28.71892 -25.42776 -24.80703 -24.35852 -23.17337 -21.83673 -20.38873 -19.88033 -18.71659 -17.70950 -16.96023 -16.66800 -16.51221 -15.82941 -15.43891 -15.22522 -15.07835 -14.60915 -14.27881 -13.95704 -13.64429 -13.47436 -13.19975 -12.86749 -12.54404 -12.40264 -12.25227 -11.93039 -11.81366 -11.74919 -11.41228 -11.32018 -11.04115 -10.92009 -10.82500 -10.74579 -10.41372 -10.02604 -9.75744 -9.50810 -9.29707 -8.60739 -8.53560 -8.21033 -7.23978 -6.39617 -3.24981 2.68748 2.92472 3.41616 3.46670 3.57300 3.64634 3.77950 4.47816 4.55059 4.62183 4.66369 4.74715 4.87569 4.91546 4.98503 5.00261 5.04053 5.23429 5.28910 5.33364 5.37679 5.39501 5.42878 5.52039 5.61278 5.67385 5.75994 5.83019 5.88981 5.95632 6.06987 6.13911 6.32959 6.37949 6.48021 6.60377 6.69635 6.73049 6.91894 7.45599 7.79349 8.24004 8.33965 8.93321 9.48178 10.16967 11.08307 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.004923 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.084615 B = 5686.313334 C = 6126.770733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.520 5.520 3 C 0.019 3.981 4 C 0.059 3.941 5 O -0.378 6.378 6 C 0.077 3.923 7 C 0.039 3.961 8 H 0.068 0.932 9 C 0.537 3.463 10 O -0.529 6.529 11 N -0.610 5.610 12 C 0.083 3.917 13 C 0.143 3.857 14 H 0.112 0.888 15 C -0.155 4.155 16 C 0.118 3.882 17 H 0.121 0.879 18 C 0.109 3.891 19 N -0.601 5.601 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.913 5.913 24 Si 1.061 2.939 25 H -0.292 1.292 26 H -0.292 1.292 27 H -0.297 1.297 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.047 0.953 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.397 15.484 7.403 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.246 5.246 3 C -0.109 4.109 4 C -0.018 4.018 5 O -0.296 6.296 6 C -0.001 4.001 7 C -0.073 4.073 8 H 0.086 0.914 9 C 0.323 3.677 10 O -0.405 6.405 11 N -0.344 5.344 12 C -0.042 4.042 13 C 0.035 3.965 14 H 0.130 0.870 15 C -0.195 4.195 16 C 0.016 3.984 17 H 0.138 0.862 18 C -0.016 4.016 19 N -0.327 5.327 20 C -0.461 4.461 21 H 0.098 0.902 22 C -0.216 4.216 23 N -0.553 5.553 24 Si 0.894 3.106 25 H -0.220 1.220 26 H -0.219 1.219 27 H -0.225 1.225 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.821 13.614 9.055 18.578 hybrid contribution -0.829 1.752 -1.387 2.383 sum -9.650 15.366 7.668 19.699 Atomic orbital electron populations 1.22470 0.86316 1.03730 1.00059 1.61939 1.08735 1.12744 1.41159 1.22851 0.96704 0.89422 1.01893 1.22723 0.92079 0.96568 0.90417 1.88029 1.69535 1.23649 1.48344 1.22551 0.89460 0.84136 1.03948 1.22273 0.97992 0.93146 0.93919 0.91410 1.19688 0.78472 0.86620 0.82875 1.90685 1.51332 1.70068 1.28451 1.49255 1.60173 1.18467 1.06547 1.23292 1.00781 0.98207 0.81891 1.23192 0.88387 0.88438 0.96505 0.87037 1.24270 0.97359 1.02037 0.95793 1.23915 0.94599 0.82371 0.97520 0.86152 1.22448 0.95787 0.95966 0.87393 1.45612 1.39981 1.38610 1.08501 1.19992 1.15267 1.08774 1.02041 0.90227 1.25717 0.95084 0.97688 1.03107 1.70930 1.10828 1.43558 1.29939 0.83823 0.74722 0.76522 0.75538 1.22008 1.21940 1.22509 0.90104 0.91037 0.95748 0.89180 0.93863 0.91947 0.88194 0.91300 0.87461 0.90603 0.92512 0.91100 0.89459 0.94345 0.93493 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.14 60.06 0.55 0.81 16 2 N -0.52 -6.78 4.54 -235.96 -1.07 -7.85 16 3 C 0.02 0.19 5.65 -3.70 -0.02 0.17 16 4 C 0.06 0.61 7.01 37.21 0.26 0.87 16 5 O -0.38 -5.09 10.83 -35.23 -0.38 -5.47 16 6 C 0.08 1.10 6.27 37.20 0.23 1.33 16 7 C 0.04 0.55 1.96 -68.75 -0.13 0.41 16 8 H 0.07 0.91 7.22 -51.93 -0.37 0.54 16 9 C 0.54 9.08 6.06 -10.99 -0.07 9.01 16 10 O -0.53 -10.49 15.86 5.55 0.09 -10.40 16 11 N -0.61 -10.23 2.96 -156.79 -0.46 -10.69 16 12 C 0.08 1.31 5.76 -1.68 -0.01 1.30 16 13 C 0.14 2.49 5.53 -62.56 -0.35 2.15 16 14 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 15 C -0.15 -2.37 6.80 -22.30 -0.15 -2.53 16 16 C 0.12 2.06 5.23 -62.56 -0.33 1.74 16 17 H 0.12 1.97 8.08 -51.93 -0.42 1.55 16 18 C 0.11 2.36 4.37 -1.68 -0.01 2.36 16 19 N -0.60 -13.68 2.91 -156.35 -0.45 -14.14 16 20 C -0.33 -9.03 10.52 -15.06 -0.16 -9.18 16 21 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 22 C -0.01 -0.41 5.44 -17.43 -0.09 -0.50 16 23 N -0.91 -27.92 13.70 55.49 0.76 -27.16 16 24 Si 1.06 26.45 24.76 -169.99 -4.21 22.24 16 25 H -0.29 -7.09 6.81 56.52 0.38 -6.71 16 26 H -0.29 -6.84 6.77 56.52 0.38 -6.45 16 27 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 28 H 0.08 1.12 6.44 -51.93 -0.33 0.79 16 29 H 0.07 0.68 8.07 -51.93 -0.42 0.27 16 30 H 0.02 0.26 8.13 -51.93 -0.42 -0.16 16 31 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.11 1.57 7.90 -51.93 -0.41 1.16 16 37 H 0.08 1.32 7.90 -51.92 -0.41 0.91 16 38 H 0.06 0.73 7.76 -51.93 -0.40 0.33 16 39 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.04 0.87 3.86 -51.93 -0.20 0.67 16 42 H 0.05 1.13 8.01 -51.93 -0.42 0.71 16 43 H 0.26 7.95 8.73 -40.82 -0.36 7.59 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -32.56 331.24 -7.81 -40.38 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.80 Total: 0.16 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -0.27 Total: 7.94 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -1.23 Total: -59.84 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.29 Total: -15.87 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -4.21 Total: 22.24 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.56 -7.81 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032364797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.218 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds