Wall clock time and date at job start Tue Mar 31 2020 03:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47018 * 111.03043 * 2 1 4 4 C 1.53109 * 109.29181 * 177.65081 * 3 2 1 5 5 O 1.43011 * 109.25708 * 56.82615 * 4 3 2 6 6 C 1.43014 * 113.74255 * 301.33500 * 5 4 3 7 7 C 1.47014 * 111.00325 * 236.34654 * 2 1 3 8 8 H 1.09002 * 109.50306 * 62.40747 * 7 2 1 9 9 C 1.50703 * 109.50701 * 302.32453 * 7 2 1 10 10 O 1.21288 * 119.99332 * 330.23829 * 9 7 2 11 11 N 1.34771 * 120.00471 * 150.23404 * 9 7 2 12 12 C 1.47870 * 126.94255 * 4.93993 * 11 9 7 13 13 C 1.56011 * 105.10680 * 181.97545 * 12 11 9 14 14 H 1.09004 * 116.90121 * 159.20687 * 13 12 11 15 15 C 1.57086 * 99.60581 * 32.80318 * 13 12 11 16 16 C 1.49291 * 126.94713 * 184.90780 * 11 9 7 17 17 H 1.08999 * 116.14801 * 16.72615 * 16 11 9 18 18 C 1.56003 * 104.31611 * 246.64141 * 16 11 9 19 19 N 1.47872 * 105.11253 * 289.11246 * 18 16 11 20 20 C 1.36938 * 126.93876 * 181.88045 * 19 18 16 21 21 H 1.07994 * 119.99801 * 188.77054 * 20 19 18 22 22 C 1.38808 * 120.00312 * 8.76496 * 20 19 18 23 23 N 1.31614 * 120.00353 * 207.99271 * 22 20 19 24 24 Si 1.86800 * 119.99891 * 27.99057 * 22 20 19 25 25 H 1.48504 * 109.47390 * 275.23118 * 24 22 20 26 26 H 1.48497 * 109.47367 * 35.23783 * 24 22 20 27 27 H 1.48507 * 109.47358 * 155.23512 * 24 22 20 28 28 H 1.09002 * 109.46634 * 188.60907 * 1 2 3 29 29 H 1.08998 * 109.47524 * 308.60755 * 1 2 3 30 30 H 1.09003 * 109.47272 * 68.61638 * 1 2 3 31 31 H 1.09002 * 109.50735 * 57.69776 * 3 2 1 32 32 H 1.08993 * 109.51042 * 297.60479 * 3 2 1 33 33 H 1.08997 * 109.50467 * 296.89442 * 4 3 2 34 34 H 1.09000 * 109.53897 * 176.78819 * 4 3 2 35 35 H 1.09004 * 109.50298 * 298.73257 * 6 5 4 36 36 H 1.09000 * 109.54521 * 178.63111 * 6 5 4 37 37 H 1.09007 * 110.31429 * 63.06660 * 12 11 9 38 38 H 1.08996 * 110.31864 * 300.88635 * 12 11 9 39 39 H 1.09008 * 112.36331 * 64.27504 * 15 13 12 40 40 H 1.09000 * 112.37126 * 191.62329 * 15 13 12 41 41 H 1.09002 * 110.41166 * 170.14888 * 18 16 11 42 42 H 1.08999 * 110.19938 * 47.96900 * 18 16 11 43 43 H 0.96998 * 120.00125 * 354.88387 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9966 1.3722 0.0000 4 6 3.5258 1.3262 0.0592 5 8 4.0176 0.5571 -1.0416 6 6 3.5250 -0.7852 -1.0718 7 6 1.9959 -0.7606 -1.1424 8 1 1.6821 -0.2854 -2.0719 9 6 1.4672 -2.1710 -1.0949 10 8 1.2057 -2.6849 -0.0278 11 7 1.2848 -2.8613 -2.2380 12 6 1.6447 -2.4277 -3.6051 13 6 1.1663 -3.5835 -4.5374 14 1 1.0120 -3.3377 -5.5881 15 6 -0.0976 -4.0606 -3.7360 16 6 0.6792 -4.2184 -2.3798 17 1 0.1026 -4.5786 -1.5278 18 6 1.8584 -5.1185 -2.8625 19 7 2.1203 -4.6965 -4.2553 20 6 3.0468 -5.2242 -5.1146 21 1 3.2435 -4.7406 -6.0600 22 6 3.7332 -6.3806 -4.7706 23 7 4.9394 -6.5974 -5.2503 24 14 2.9448 -7.6293 -3.6267 25 1 3.1865 -7.2308 -2.2167 26 1 1.4830 -7.6816 -3.8827 27 1 3.5382 -8.9686 -3.8711 28 1 -0.3633 -1.0161 0.1538 29 1 -0.3634 0.6412 0.8030 30 1 -0.3634 0.3747 -0.9569 31 1 1.6147 1.9090 0.8684 32 1 1.6829 1.8828 -0.9104 33 1 3.8401 0.8643 0.9951 34 1 3.9235 2.3395 0.0019 35 1 3.8393 -1.3086 -0.1688 36 1 3.9217 -1.2996 -1.9472 37 1 2.7236 -2.2959 -3.6886 38 1 1.1291 -1.5008 -3.8562 39 1 -0.8702 -3.2933 -3.6846 40 1 -0.4888 -5.0090 -4.1043 41 1 1.5710 -6.1696 -2.8332 42 1 2.7393 -4.9487 -2.2435 43 1 5.3192 -5.9871 -5.9017 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032364797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:56 Heat of formation + Delta-G solvation = -19.407995 kcal Electronic energy + Delta-G solvation = -25635.356746 eV Core-core repulsion = 22103.195891 eV Total energy + Delta-G solvation = -3532.160855 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.05435 -40.80348 -39.13956 -36.65569 -35.65084 -33.89513 -32.54185 -30.85211 -30.79681 -29.76598 -26.88228 -26.07812 -25.31101 -24.85075 -23.10764 -21.54118 -21.38486 -20.22643 -19.34044 -18.49291 -17.81320 -17.57882 -17.11783 -16.80956 -16.34643 -16.26433 -15.98914 -15.75645 -15.25385 -14.99791 -14.91495 -14.40311 -14.37045 -13.83999 -13.57654 -13.56911 -13.25878 -13.21889 -12.89531 -12.80558 -12.67573 -12.37975 -12.34315 -12.21849 -12.07831 -11.79537 -11.68802 -11.35700 -11.12047 -10.73351 -10.56836 -9.67150 -9.50188 -9.20436 -8.61007 -5.39102 1.38139 1.38535 1.45773 1.62810 1.70196 2.50489 2.60448 2.78773 2.90022 3.21435 3.35697 3.54359 3.65908 3.73059 3.74212 3.80066 3.87763 4.04626 4.12029 4.20411 4.30311 4.41312 4.42928 4.49952 4.51423 4.56981 4.59370 4.65779 4.77391 4.80828 4.87428 4.93337 4.94156 5.02068 5.09427 5.17850 5.54349 5.66211 5.86567 5.95355 6.07159 6.47269 6.77910 7.01960 7.43699 8.13285 8.87623 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.004923 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.084615 B = 5686.313334 C = 6126.770733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.022 3.978 4 C 0.051 3.949 5 O -0.389 6.389 6 C 0.082 3.918 7 C 0.049 3.951 8 H 0.081 0.919 9 C 0.536 3.464 10 O -0.562 6.562 11 N -0.611 5.611 12 C 0.092 3.908 13 C 0.134 3.866 14 H 0.130 0.870 15 C -0.131 4.131 16 C 0.121 3.879 17 H 0.134 0.866 18 C 0.105 3.895 19 N -0.621 5.621 20 C -0.308 4.308 21 H 0.060 0.940 22 C -0.074 4.074 23 N -0.955 5.955 24 Si 1.097 2.903 25 H -0.290 1.290 26 H -0.265 1.265 27 H -0.306 1.306 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.037 0.963 31 H 0.115 0.885 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.131 0.869 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.034 0.966 42 H 0.012 0.988 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.196 18.006 8.022 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.267 5.267 3 C -0.105 4.105 4 C -0.025 4.025 5 O -0.307 6.307 6 C 0.004 3.996 7 C -0.063 4.063 8 H 0.099 0.901 9 C 0.324 3.676 10 O -0.440 6.440 11 N -0.346 5.346 12 C -0.032 4.032 13 C 0.028 3.972 14 H 0.147 0.853 15 C -0.170 4.170 16 C 0.019 3.981 17 H 0.151 0.849 18 C -0.021 4.021 19 N -0.347 5.347 20 C -0.437 4.437 21 H 0.078 0.922 22 C -0.269 4.269 23 N -0.599 5.599 24 Si 0.926 3.074 25 H -0.218 1.218 26 H -0.192 1.192 27 H -0.235 1.235 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.051 0.949 42 H 0.030 0.970 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.677 16.197 9.670 22.186 hybrid contribution 0.050 1.124 -1.560 1.924 sum -11.627 17.321 8.110 22.382 Atomic orbital electron populations 1.22436 0.85435 1.02709 1.01592 1.61935 1.09705 1.14418 1.40622 1.22945 0.96109 0.87961 1.03504 1.23024 0.92747 0.97485 0.89245 1.88015 1.69957 1.23049 1.49728 1.22355 0.89916 0.84788 1.02585 1.22138 0.97360 0.91610 0.95213 0.90098 1.20184 0.77589 0.87554 0.82233 1.90665 1.52684 1.71063 1.29599 1.49337 1.60017 1.18170 1.07031 1.23170 0.99997 0.99176 0.80898 1.23582 0.88397 0.86948 0.98280 0.85275 1.24168 0.96742 1.03247 0.92856 1.23930 0.93228 0.81787 0.99201 0.84877 1.22446 0.96366 0.96821 0.86467 1.45653 1.40836 1.39688 1.08541 1.19925 1.14991 1.07454 1.01295 0.92176 1.26687 0.95230 0.99918 1.05056 1.71026 1.12606 1.44337 1.31953 0.83350 0.75408 0.74280 0.74313 1.21784 1.19154 1.23462 0.92668 0.88895 0.94474 0.86676 0.92914 0.92402 0.85147 0.93055 0.88596 0.92821 0.88233 0.87215 0.89297 0.94916 0.96974 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.14 127.69 1.17 1.69 16 2 N -0.54 -12.74 4.54 -900.45 -4.08 -16.83 16 3 C 0.02 0.37 5.65 86.32 0.49 0.85 16 4 C 0.05 0.92 7.01 72.02 0.50 1.43 16 5 O -0.39 -9.93 10.83 -148.98 -1.61 -11.55 16 6 C 0.08 2.31 6.27 72.01 0.45 2.76 16 7 C 0.05 1.30 1.96 44.18 0.09 1.38 16 8 H 0.08 1.92 7.22 -2.39 -0.02 1.90 16 9 C 0.54 17.41 6.06 87.66 0.53 17.95 16 10 O -0.56 -21.91 15.86 -3.06 -0.05 -21.96 16 11 N -0.61 -19.29 2.96 -768.36 -2.27 -21.56 16 12 C 0.09 2.65 5.76 87.16 0.50 3.15 16 13 C 0.13 4.30 5.53 46.93 0.26 4.56 16 14 H 0.13 3.70 8.14 -2.38 -0.02 3.68 16 15 C -0.13 -3.49 6.80 33.46 0.23 -3.26 16 16 C 0.12 3.96 5.23 46.92 0.25 4.20 16 17 H 0.13 4.04 8.08 -2.39 -0.02 4.02 16 18 C 0.10 4.47 4.37 87.16 0.38 4.85 16 19 N -0.62 -27.85 2.91 -648.59 -1.89 -29.73 16 20 C -0.31 -16.90 10.52 84.03 0.88 -16.02 16 21 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 22 C -0.07 -4.34 5.44 84.86 0.46 -3.88 16 23 N -0.96 -60.80 13.70 21.65 0.30 -60.50 16 24 Si 1.10 54.54 24.76 68.60 1.70 56.24 16 25 H -0.29 -14.13 6.81 99.48 0.68 -13.45 16 26 H -0.27 -11.88 6.77 99.48 0.67 -11.21 16 27 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 28 H 0.05 1.42 6.44 -2.39 -0.02 1.40 16 29 H 0.09 1.45 8.07 -2.39 -0.02 1.43 16 30 H 0.04 0.65 8.13 -2.39 -0.02 0.63 16 31 H 0.12 1.36 8.10 -2.39 -0.02 1.34 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 2.86 7.90 -2.39 -0.02 2.84 16 37 H 0.05 1.81 7.90 -2.38 -0.02 1.79 16 38 H 0.10 2.10 7.76 -2.39 -0.02 2.08 16 39 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.03 1.46 3.86 -2.39 -0.01 1.45 16 42 H 0.01 0.60 8.01 -2.39 -0.02 0.58 16 43 H 0.25 15.92 8.73 -92.71 -0.81 15.11 16 Total: -1.00 -73.63 331.24 -0.82 -74.46 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.89 Total: 11.77 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 6.19 Total: 19.66 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -7.95 Total: -128.62 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.66 Total: -33.50 kcal Atomic # 14 Polarization: 54.54 SS G_CDS: 1.70 Total: 56.24 kcal Total: -73.63 -0.82 -74.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032364797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.047 kcal (2) G-P(sol) polarization free energy of solvation -73.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds