Wall clock time and date at job start Tue Mar 31 2020 03:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34778 * 119.99968 * 2 1 4 4 O 1.21278 * 119.99662 * 184.56267 * 3 2 1 5 5 C 1.50703 * 119.99955 * 4.56436 * 3 2 1 6 6 H 1.09001 * 109.40134 * 334.78020 * 5 3 2 7 7 C 1.53066 * 109.40038 * 215.03930 * 5 3 2 8 8 C 1.53350 * 108.42334 * 190.97324 * 7 5 3 9 9 C 1.52919 * 108.67369 * 67.53003 * 8 7 5 10 10 N 1.45751 * 110.48901 * 309.24341 * 9 8 7 11 11 C 1.33356 * 124.10539 * 19.07811 * 10 9 8 12 12 O 1.21284 * 118.24675 * 177.75269 * 11 10 9 13 13 C 1.46495 * 119.99699 * 180.02562 * 2 1 3 14 14 H 1.09011 * 110.63790 * 181.68403 * 13 2 1 15 15 C 1.55159 * 110.72349 * 305.02008 * 13 2 1 16 16 C 1.54903 * 101.58035 * 153.86843 * 15 13 2 17 17 N 1.47420 * 104.83539 * 322.98930 * 16 15 13 18 18 C 1.36943 * 125.65085 * 204.09035 * 17 16 15 19 19 H 1.07999 * 119.99783 * 165.30884 * 18 17 16 20 20 C 1.38804 * 119.99869 * 345.31508 * 18 17 16 21 21 N 1.31623 * 119.99995 * 352.59670 * 20 18 17 22 22 Si 1.86801 * 120.00011 * 172.60344 * 20 18 17 23 23 H 1.48500 * 109.47205 * 94.95675 * 22 20 18 24 24 H 1.48502 * 109.47014 * 214.95825 * 22 20 18 25 25 H 1.48500 * 109.46690 * 334.95610 * 22 20 18 26 26 C 1.47024 * 108.70330 * 24.13260 * 17 16 15 27 27 H 1.08993 * 109.47179 * 84.27723 * 1 2 3 28 28 H 1.09000 * 109.46875 * 204.28163 * 1 2 3 29 29 H 1.09000 * 109.46916 * 324.27933 * 1 2 3 30 30 H 1.09001 * 109.67008 * 310.70073 * 7 5 3 31 31 H 1.08994 * 109.67818 * 71.19678 * 7 5 3 32 32 H 1.08993 * 109.60126 * 307.76972 * 8 7 5 33 33 H 1.08997 * 109.60174 * 187.28660 * 8 7 5 34 34 H 1.08999 * 109.29690 * 188.93736 * 9 8 7 35 35 H 1.08993 * 109.30401 * 69.56020 * 9 8 7 36 36 H 0.96993 * 117.94988 * 199.10299 * 10 9 8 37 37 H 1.09005 * 111.00166 * 271.94164 * 15 13 2 38 38 H 1.08993 * 111.00179 * 35.79030 * 15 13 2 39 39 H 1.09001 * 110.36707 * 204.14917 * 16 15 13 40 40 H 1.09003 * 110.36766 * 81.83606 * 16 15 13 41 41 H 0.97003 * 119.99616 * 180.02562 * 21 20 18 42 42 H 1.08994 * 109.88352 * 239.52231 * 26 17 16 43 43 H 1.09000 * 109.88593 * 118.35322 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3488 1.1688 -0.0836 5 6 1.3890 2.4703 0.1039 6 1 0.3744 2.3350 -0.2709 7 6 2.1009 3.5348 -0.7344 8 6 1.4919 4.9020 -0.4003 9 6 1.8556 5.2609 1.0410 10 7 1.5276 4.1608 1.9390 11 6 1.3364 2.9024 1.5412 12 8 1.1084 2.0619 2.3853 13 6 2.1975 -1.2687 -0.0006 14 1 3.2727 -1.0917 0.0295 15 6 1.7507 -2.1611 1.1875 16 6 2.0638 -3.5785 0.6467 17 7 1.7323 -3.5167 -0.7884 18 6 1.4004 -4.5854 -1.5777 19 1 0.9476 -4.4226 -2.5446 20 6 1.6457 -5.8779 -1.1349 21 7 2.3270 -6.0755 -0.0262 22 14 1.0090 -7.3367 -2.1126 23 1 2.0750 -7.8249 -3.0240 24 1 0.6181 -8.4246 -1.1805 25 1 -0.1721 -6.9202 -2.9106 26 6 1.8182 -2.1177 -1.2323 27 1 -0.3633 0.1025 -1.0225 28 1 -0.3633 -0.9368 0.4226 29 1 -0.3633 0.8343 0.6000 30 1 3.1645 3.5388 -0.4960 31 1 1.9632 3.3202 -1.7941 32 1 0.4079 4.8544 -0.5030 33 1 1.8930 5.6562 -1.0773 34 1 1.3004 6.1493 1.3420 35 1 2.9236 5.4695 1.1019 36 1 1.4426 4.3562 2.8852 37 1 2.3374 -1.9452 2.0805 38 1 0.6851 -2.0446 1.3845 39 1 1.4431 -4.3214 1.1477 40 1 3.1199 -3.8116 0.7825 41 1 2.4987 -6.9788 0.2830 42 1 0.8541 -1.7930 -1.6235 43 1 2.5848 -2.0189 -2.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033161921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:19 Heat of formation + Delta-G solvation = -39.660601 kcal Electronic energy + Delta-G solvation = -24786.756941 eV Core-core repulsion = 21253.717867 eV Total energy + Delta-G solvation = -3533.039074 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.10284 -39.24098 -37.30963 -36.69994 -34.74735 -33.36421 -32.04629 -30.25187 -29.09694 -27.61597 -26.56536 -25.31903 -24.19541 -23.08155 -21.08370 -20.21004 -19.33716 -18.62823 -17.68307 -17.26397 -16.87414 -16.69447 -16.00913 -15.16717 -14.72993 -14.63173 -14.46239 -14.21534 -13.93896 -13.89561 -13.68153 -12.99646 -12.90262 -12.46937 -12.25477 -12.07269 -11.88960 -11.73154 -11.68222 -11.55650 -11.23898 -10.86640 -10.82206 -10.78926 -10.36087 -10.05272 -10.01737 -9.81347 -9.67640 -9.60207 -9.38581 -8.56831 -8.28378 -6.74136 -5.72616 -3.07804 2.25004 2.57068 3.08658 3.24503 3.41391 3.46631 3.48872 4.21009 4.30677 4.33457 4.37830 4.52364 4.72519 4.91438 4.95353 5.17071 5.29102 5.35358 5.42372 5.44373 5.47622 5.56427 5.58680 5.66463 5.79038 5.83208 5.89306 5.99873 6.25644 6.42444 6.46033 6.61442 6.65200 6.76089 6.96269 7.02327 7.48626 7.59812 7.66610 7.79972 7.92773 8.26370 8.31153 9.21065 9.82652 10.51733 11.40627 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.039374 B = 0.003329 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.967479 B = 8408.512642 C = 8624.141605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.587 5.587 3 C 0.535 3.465 4 O -0.539 6.539 5 C -0.128 4.128 6 H 0.124 0.876 7 C -0.112 4.112 8 C -0.136 4.136 9 C 0.108 3.892 10 N -0.718 5.718 11 C 0.534 3.466 12 O -0.536 6.536 13 C 0.128 3.872 14 H 0.103 0.897 15 C -0.153 4.153 16 C 0.176 3.824 17 N -0.600 5.600 18 C -0.231 4.231 19 H 0.075 0.925 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.130 3.870 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.402 0.598 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.032 0.968 41 H 0.253 0.747 42 H 0.027 0.973 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.609 24.810 1.068 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.318 5.318 3 C 0.321 3.679 4 O -0.416 6.416 5 C -0.152 4.152 6 H 0.141 0.859 7 C -0.150 4.150 8 C -0.174 4.174 9 C -0.016 4.016 10 N -0.371 5.371 11 C 0.319 3.681 12 O -0.413 6.413 13 C 0.025 3.975 14 H 0.121 0.879 15 C -0.192 4.192 16 C 0.051 3.949 17 N -0.327 5.327 18 C -0.359 4.359 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.003 3.997 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.238 0.762 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.062 24.061 1.228 24.433 hybrid contribution -0.425 -0.631 -0.175 0.781 sum -4.487 23.430 1.053 23.879 Atomic orbital electron populations 1.21821 0.79736 1.04020 1.01273 1.47708 1.07049 1.05735 1.71300 1.19653 0.87481 0.84373 0.76411 1.90683 1.13811 1.86913 1.50234 1.21463 1.03423 0.95741 0.94580 0.85872 1.21611 1.01375 0.91961 1.00053 1.21899 1.01944 0.97880 0.95646 1.21430 1.01070 0.88955 0.90181 1.45357 1.71949 1.07956 1.11863 1.19452 0.76186 0.82266 0.90185 1.90835 1.48203 1.49471 1.52771 1.22249 0.97090 0.81187 0.97008 0.87881 1.23377 1.00804 0.98407 0.96600 1.21348 0.99004 0.90482 0.84050 1.44404 1.81497 1.00897 1.05907 1.18987 1.33148 0.83921 0.99878 0.90763 1.24906 0.99632 0.97491 0.98177 1.69954 1.42811 1.20169 1.23287 0.86118 0.78376 0.82414 0.78924 1.21573 1.21629 1.20574 1.21528 0.97853 0.86405 0.93875 0.92556 0.89655 0.91465 0.89353 0.89937 0.90738 0.89150 0.90347 0.91337 0.76217 0.91836 0.91585 0.91635 0.94976 0.93650 0.95537 0.95666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 8.53 59.85 0.51 1.52 16 2 N -0.59 -9.86 2.88 -171.83 -0.50 -10.35 16 3 C 0.54 8.76 6.20 -10.98 -0.07 8.69 16 4 O -0.54 -10.57 15.44 5.56 0.09 -10.49 16 5 C -0.13 -1.48 2.01 -93.14 -0.19 -1.66 16 6 H 0.12 1.14 6.28 -51.93 -0.33 0.82 16 7 C -0.11 -0.98 5.17 -26.52 -0.14 -1.12 16 8 C -0.14 -0.70 6.02 -26.59 -0.16 -0.86 16 9 C 0.11 0.56 7.17 -4.49 -0.03 0.53 16 10 N -0.72 -6.14 5.45 -61.39 -0.33 -6.47 16 11 C 0.53 6.67 7.23 -11.87 -0.09 6.58 16 12 O -0.54 -8.92 16.80 5.55 0.09 -8.83 16 13 C 0.13 2.55 3.35 -66.10 -0.22 2.33 16 14 H 0.10 2.23 7.01 -51.92 -0.36 1.86 16 15 C -0.15 -3.12 6.59 -24.58 -0.16 -3.29 16 16 C 0.18 4.43 5.37 -2.53 -0.01 4.41 16 17 N -0.60 -15.81 3.39 -170.08 -0.58 -16.38 16 18 C -0.23 -6.55 10.22 -15.06 -0.15 -6.71 16 19 H 0.07 2.04 7.84 -52.49 -0.41 1.63 16 20 C 0.00 -0.14 5.41 -17.43 -0.09 -0.23 16 21 N -0.92 -27.35 10.80 55.49 0.60 -26.75 16 22 Si 0.91 22.26 29.56 -169.99 -5.02 17.23 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.13 2.88 6.88 -3.06 -0.02 2.86 16 27 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.08 1.25 6.13 -51.93 -0.32 0.93 16 29 H 0.07 0.80 6.12 -51.93 -0.32 0.48 16 30 H 0.09 0.93 7.47 -51.93 -0.39 0.55 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.40 2.99 8.80 -40.82 -0.36 2.63 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.28 6.14 -51.93 -0.32 0.96 16 39 H 0.07 1.78 7.19 -51.93 -0.37 1.41 16 40 H 0.03 0.88 7.98 -51.93 -0.41 0.46 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.03 0.56 7.07 -51.93 -0.37 0.19 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -35.78 337.19 -7.87 -43.65 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.47 Total: 0.26 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: -0.83 Total: 13.05 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.81 Total: -59.96 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.18 Total: -19.31 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.78 -7.87 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033161921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.991 kcal (2) G-P(sol) polarization free energy of solvation -35.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds