Wall clock time and date at job start Tue Mar 31 2020 03:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99729 * 2 1 4 4 O 1.21276 * 120.00244 * 5.45770 * 3 2 1 5 5 C 1.50704 * 119.99836 * 185.45180 * 3 2 1 6 6 H 1.09011 * 109.59548 * 41.29575 * 5 3 2 7 7 C 1.53341 * 109.60492 * 161.61578 * 5 3 2 8 8 C 1.53006 * 108.46522 * 187.11787 * 7 5 3 9 9 C 1.50179 * 110.00391 * 311.36870 * 8 7 5 10 10 O 1.21278 * 118.24694 * 197.49532 * 9 8 7 11 11 N 1.33349 * 123.50886 * 17.46852 * 9 8 7 12 12 C 1.45753 * 124.10848 * 357.75769 * 11 9 8 13 13 C 1.46504 * 120.00031 * 179.97438 * 2 1 3 14 14 H 1.08994 * 110.63590 * 189.74629 * 13 2 1 15 15 C 1.55150 * 110.71759 * 312.88826 * 13 2 1 16 16 C 1.55122 * 101.48535 * 153.73480 * 15 13 2 17 17 N 1.47423 * 104.94052 * 323.22155 * 16 15 13 18 18 C 1.36944 * 125.64785 * 203.96653 * 17 16 15 19 19 H 1.08003 * 119.99559 * 180.02562 * 18 17 16 20 20 C 1.38813 * 120.00002 * 0.04026 * 18 17 16 21 21 N 1.31618 * 119.99651 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99900 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47218 * 90.00231 * 22 20 18 24 24 H 1.48498 * 109.47065 * 210.00109 * 22 20 18 25 25 H 1.48502 * 109.47313 * 330.00051 * 22 20 18 26 26 C 1.47025 * 108.70423 * 24.00400 * 17 16 15 27 27 H 1.08996 * 109.47309 * 275.70623 * 1 2 3 28 28 H 1.09006 * 109.46733 * 35.70806 * 1 2 3 29 29 H 1.09004 * 109.46871 * 155.70296 * 1 2 3 30 30 H 1.08994 * 109.67497 * 307.02602 * 7 5 3 31 31 H 1.09006 * 109.67183 * 67.55243 * 7 5 3 32 32 H 1.09001 * 109.43398 * 191.14840 * 8 7 5 33 33 H 1.08994 * 109.18521 * 71.42909 * 8 7 5 34 34 H 0.96999 * 117.94635 * 177.77879 * 11 9 8 35 35 H 1.09006 * 109.29868 * 258.78531 * 12 11 9 36 36 H 1.09002 * 109.13627 * 139.29936 * 12 11 9 37 37 H 1.08996 * 111.00792 * 271.93740 * 15 13 2 38 38 H 1.09000 * 111.00550 * 35.79404 * 15 13 2 39 39 H 1.08998 * 110.42200 * 204.29653 * 16 15 13 40 40 H 1.09002 * 110.30173 * 82.08735 * 16 15 13 41 41 H 0.97007 * 119.99305 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.87908 * 239.52183 * 26 17 16 43 43 H 1.08994 * 110.00932 * 118.42851 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5366 2.2151 0.0999 5 6 3.6408 1.1702 -0.1240 6 1 3.9479 0.4324 -0.8654 7 6 4.1187 2.5621 -0.5547 8 6 5.6193 2.4909 -0.8451 9 6 6.3290 1.8015 0.2846 10 8 7.5302 1.9406 0.3779 11 7 5.7091 1.0449 1.1910 12 6 4.2680 0.8301 1.2285 13 6 2.1976 -1.2688 0.0006 14 1 3.2602 -1.0987 0.1732 15 6 1.6167 -2.2374 1.0643 16 6 1.9960 -3.6172 0.4654 17 7 1.8410 -3.4547 -0.9917 18 6 1.6118 -4.4648 -1.8875 19 1 1.5131 -4.2414 -2.9395 20 6 1.5059 -5.7757 -1.4433 21 7 1.6254 -6.0477 -0.1610 22 14 1.1940 -7.1536 -2.6653 23 1 2.4916 -7.6858 -3.1531 24 1 0.4313 -8.2410 -2.0011 25 1 0.4109 -6.6295 -3.8131 26 6 1.9742 -2.0287 -1.3238 27 1 -0.3634 0.1022 1.0225 28 1 -0.3633 0.8345 -0.5998 29 1 -0.3633 -0.9367 -0.4229 30 1 3.5834 2.8725 -1.4520 31 1 3.9366 3.2772 0.2476 32 1 6.0149 3.5001 -0.9592 33 1 5.7795 1.9328 -1.7676 34 1 6.2512 0.6105 1.8680 35 1 3.8292 1.4644 1.9988 36 1 4.0685 -0.2149 1.4656 37 1 2.0924 -2.0848 2.0330 38 1 0.5347 -2.1303 1.1409 39 1 1.3221 -4.3903 0.8346 40 1 3.0284 -3.8655 0.7117 41 1 1.5511 -6.9637 0.1494 42 1 1.0633 -1.6738 -1.8059 43 1 2.8268 -1.8781 -1.9860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033222321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:31 Heat of formation + Delta-G solvation = -41.055686 kcal Electronic energy + Delta-G solvation = -24917.664144 eV Core-core repulsion = 21384.564574 eV Total energy + Delta-G solvation = -3533.099569 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.95869 -39.65608 -37.71852 -36.38981 -34.76424 -33.24205 -32.08196 -30.61010 -29.33586 -27.72088 -26.66452 -25.03564 -24.54657 -23.12016 -21.00171 -20.38426 -19.82111 -18.63635 -17.71882 -17.21036 -16.95449 -16.34414 -15.81750 -15.44462 -15.12556 -14.82582 -14.48372 -14.33733 -14.15070 -13.92441 -13.55906 -13.14118 -12.81401 -12.54978 -12.17258 -12.14019 -12.02831 -11.89485 -11.72898 -11.44551 -11.21599 -11.21060 -11.06103 -10.89757 -10.53796 -10.20541 -10.06472 -9.94004 -9.85144 -9.63270 -9.30649 -8.77718 -8.53688 -6.98897 -5.78038 -3.20743 2.43155 2.50573 2.92293 3.13471 3.33126 3.38813 3.40213 4.17497 4.31285 4.38228 4.40298 4.48477 4.84888 4.97868 5.00061 5.10198 5.15652 5.22962 5.36513 5.39177 5.46995 5.53002 5.54803 5.57980 5.67525 5.73092 5.89597 5.93325 6.05370 6.16391 6.33716 6.41279 6.49086 6.53961 6.64663 7.08316 7.31693 7.43771 7.49861 7.70668 8.01118 8.10772 8.21854 9.08614 9.69139 10.31231 11.25804 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.004071 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.664280 B = 6876.085042 C = 7585.061180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.597 5.597 3 C 0.523 3.477 4 O -0.542 6.542 5 C -0.128 4.128 6 H 0.107 0.893 7 C -0.102 4.102 8 C -0.136 4.136 9 C 0.520 3.480 10 O -0.560 6.560 11 N -0.716 5.716 12 C 0.118 3.882 13 C 0.113 3.887 14 H 0.096 0.904 15 C -0.152 4.152 16 C 0.152 3.848 17 N -0.601 5.601 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.127 3.873 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.403 0.597 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.015 0.985 41 H 0.253 0.747 42 H 0.031 0.969 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.056 13.567 2.803 14.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.328 5.328 3 C 0.310 3.690 4 O -0.419 6.419 5 C -0.150 4.150 6 H 0.125 0.875 7 C -0.140 4.140 8 C -0.176 4.176 9 C 0.308 3.692 10 O -0.439 6.439 11 N -0.368 5.368 12 C -0.007 4.007 13 C 0.009 3.991 14 H 0.114 0.886 15 C -0.192 4.192 16 C 0.027 3.973 17 N -0.328 5.328 18 C -0.354 4.354 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.570 5.570 22 Si 0.746 3.254 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.001 4.001 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.239 0.761 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.129 0.871 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.157 14.067 2.715 14.488 hybrid contribution -0.015 -1.149 -0.389 1.213 sum 2.142 12.918 2.325 13.300 Atomic orbital electron populations 1.21608 0.78994 1.03196 1.01760 1.47939 1.07259 1.05805 1.71789 1.20143 0.88945 0.83418 0.76502 1.90685 1.70111 1.31236 1.49902 1.21666 0.93114 1.00956 0.99265 0.87493 1.21475 0.93851 0.95055 1.03593 1.21681 0.95482 1.02887 0.97540 1.20225 0.87573 0.78286 0.83136 1.90762 1.15250 1.62734 1.75117 1.45410 1.08290 1.50604 1.32538 1.21390 0.80177 1.02739 0.96345 1.22545 0.95877 0.82406 0.98254 0.88579 1.23447 1.00980 0.98052 0.96683 1.21998 0.99809 0.92468 0.83025 1.44408 1.84571 1.00185 1.03599 1.19060 1.41786 0.85575 0.89015 0.90415 1.24780 1.01934 0.97219 0.96388 1.69761 1.56651 1.18431 1.12129 0.86064 0.77810 0.81726 0.79837 1.21533 1.21573 1.20643 1.21574 0.98470 0.86533 0.93475 0.92740 0.91297 0.90067 0.89676 0.90142 0.87646 0.87865 0.76105 0.90716 0.89264 0.91834 0.91169 0.87146 0.96676 0.93580 0.95158 0.95728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 8.74 59.85 0.52 1.64 16 2 N -0.60 -7.97 2.86 -171.84 -0.49 -8.47 16 3 C 0.52 6.81 6.83 -10.98 -0.08 6.74 16 4 O -0.54 -8.46 15.90 5.56 0.09 -8.37 16 5 C -0.13 -1.33 1.71 -91.64 -0.16 -1.48 16 6 H 0.11 1.10 7.18 -51.92 -0.37 0.72 16 7 C -0.10 -0.96 4.67 -26.55 -0.12 -1.08 16 8 C -0.14 -1.24 6.03 -28.13 -0.17 -1.41 16 9 C 0.52 6.15 7.72 -11.87 -0.09 6.06 16 10 O -0.56 -8.82 17.78 5.56 0.10 -8.72 16 11 N -0.72 -7.08 5.45 -61.39 -0.33 -7.41 16 12 C 0.12 1.09 6.20 -4.49 -0.03 1.06 16 13 C 0.11 1.64 2.75 -66.10 -0.18 1.46 16 14 H 0.10 1.25 4.31 -51.93 -0.22 1.02 16 15 C -0.15 -2.44 6.56 -24.47 -0.16 -2.60 16 16 C 0.15 3.29 5.89 -2.41 -0.01 3.28 16 17 N -0.60 -14.00 3.40 -169.94 -0.58 -14.57 16 18 C -0.23 -5.91 10.27 -15.06 -0.15 -6.07 16 19 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 21 N -0.92 -25.30 10.09 55.49 0.56 -24.74 16 22 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 C 0.13 2.34 6.78 -3.07 -0.02 2.32 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 29 H 0.08 1.11 6.71 -51.93 -0.35 0.76 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.40 3.61 8.80 -40.82 -0.36 3.25 16 35 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 36 H 0.09 0.79 6.23 -51.93 -0.32 0.47 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.13 6.66 -51.93 -0.35 0.78 16 39 H 0.11 2.76 5.87 -51.93 -0.30 2.45 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.03 0.57 6.98 -51.93 -0.36 0.21 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 335.78 15.07 5.06 5.06 Total: -1.00 -31.66 335.78 -7.76 -39.42 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.39 Total: 2.12 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -0.75 Total: 9.62 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.84 Total: -55.19 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.19 Total: -17.09 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.66 -7.76 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033222321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.639 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds