Wall clock time and date at job start Tue Mar 31 2020 03:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99729 * 2 1 4 4 O 1.21276 * 120.00244 * 5.45770 * 3 2 1 5 5 C 1.50704 * 119.99836 * 185.45180 * 3 2 1 6 6 H 1.09011 * 109.59548 * 41.29575 * 5 3 2 7 7 C 1.53341 * 109.60492 * 161.61578 * 5 3 2 8 8 C 1.53006 * 108.46522 * 187.11787 * 7 5 3 9 9 C 1.50179 * 110.00391 * 311.36870 * 8 7 5 10 10 O 1.21278 * 118.24694 * 197.49532 * 9 8 7 11 11 N 1.33349 * 123.50886 * 17.46852 * 9 8 7 12 12 C 1.45753 * 124.10848 * 357.75769 * 11 9 8 13 13 C 1.46504 * 120.00031 * 179.97438 * 2 1 3 14 14 H 1.08994 * 110.63590 * 189.74629 * 13 2 1 15 15 C 1.55150 * 110.71759 * 312.88826 * 13 2 1 16 16 C 1.55122 * 101.48535 * 153.73480 * 15 13 2 17 17 N 1.47423 * 104.94052 * 323.22155 * 16 15 13 18 18 C 1.36944 * 125.64785 * 203.96653 * 17 16 15 19 19 H 1.08003 * 119.99559 * 180.02562 * 18 17 16 20 20 C 1.38813 * 120.00002 * 0.04026 * 18 17 16 21 21 N 1.31618 * 119.99651 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99900 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47218 * 90.00231 * 22 20 18 24 24 H 1.48498 * 109.47065 * 210.00109 * 22 20 18 25 25 H 1.48502 * 109.47313 * 330.00051 * 22 20 18 26 26 C 1.47025 * 108.70423 * 24.00400 * 17 16 15 27 27 H 1.08996 * 109.47309 * 275.70623 * 1 2 3 28 28 H 1.09006 * 109.46733 * 35.70806 * 1 2 3 29 29 H 1.09004 * 109.46871 * 155.70296 * 1 2 3 30 30 H 1.08994 * 109.67497 * 307.02602 * 7 5 3 31 31 H 1.09006 * 109.67183 * 67.55243 * 7 5 3 32 32 H 1.09001 * 109.43398 * 191.14840 * 8 7 5 33 33 H 1.08994 * 109.18521 * 71.42909 * 8 7 5 34 34 H 0.96999 * 117.94635 * 177.77879 * 11 9 8 35 35 H 1.09006 * 109.29868 * 258.78531 * 12 11 9 36 36 H 1.09002 * 109.13627 * 139.29936 * 12 11 9 37 37 H 1.08996 * 111.00792 * 271.93740 * 15 13 2 38 38 H 1.09000 * 111.00550 * 35.79404 * 15 13 2 39 39 H 1.08998 * 110.42200 * 204.29653 * 16 15 13 40 40 H 1.09002 * 110.30173 * 82.08735 * 16 15 13 41 41 H 0.97007 * 119.99305 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.87908 * 239.52183 * 26 17 16 43 43 H 1.08994 * 110.00932 * 118.42851 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5366 2.2151 0.0999 5 6 3.6408 1.1702 -0.1240 6 1 3.9479 0.4324 -0.8654 7 6 4.1187 2.5621 -0.5547 8 6 5.6193 2.4909 -0.8451 9 6 6.3290 1.8015 0.2846 10 8 7.5302 1.9406 0.3779 11 7 5.7091 1.0449 1.1910 12 6 4.2680 0.8301 1.2285 13 6 2.1976 -1.2688 0.0006 14 1 3.2602 -1.0987 0.1732 15 6 1.6167 -2.2374 1.0643 16 6 1.9960 -3.6172 0.4654 17 7 1.8410 -3.4547 -0.9917 18 6 1.6118 -4.4648 -1.8875 19 1 1.5131 -4.2414 -2.9395 20 6 1.5059 -5.7757 -1.4433 21 7 1.6254 -6.0477 -0.1610 22 14 1.1940 -7.1536 -2.6653 23 1 2.4916 -7.6858 -3.1531 24 1 0.4313 -8.2410 -2.0011 25 1 0.4109 -6.6295 -3.8131 26 6 1.9742 -2.0287 -1.3238 27 1 -0.3634 0.1022 1.0225 28 1 -0.3633 0.8345 -0.5998 29 1 -0.3633 -0.9367 -0.4229 30 1 3.5834 2.8725 -1.4520 31 1 3.9366 3.2772 0.2476 32 1 6.0149 3.5001 -0.9592 33 1 5.7795 1.9328 -1.7676 34 1 6.2512 0.6105 1.8680 35 1 3.8292 1.4644 1.9988 36 1 4.0685 -0.2149 1.4656 37 1 2.0924 -2.0848 2.0330 38 1 0.5347 -2.1303 1.1409 39 1 1.3221 -4.3903 0.8346 40 1 3.0284 -3.8655 0.7117 41 1 1.5511 -6.9637 0.1494 42 1 1.0633 -1.6738 -1.8059 43 1 2.8268 -1.8781 -1.9860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033222321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:30 Heat of formation + Delta-G solvation = -63.017508 kcal Electronic energy + Delta-G solvation = -24918.616480 eV Core-core repulsion = 21384.564574 eV Total energy + Delta-G solvation = -3534.051905 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92357 -40.69353 -39.11415 -37.33974 -36.19237 -34.04406 -33.83858 -31.49396 -30.99704 -29.10912 -27.81579 -26.47321 -25.67554 -24.02394 -22.28086 -22.04672 -20.77574 -19.62146 -18.91324 -18.73017 -18.02681 -17.27084 -16.90262 -16.75200 -16.35893 -16.17178 -15.84949 -15.46827 -15.11310 -15.02918 -14.54876 -14.43740 -14.21333 -13.76582 -13.61922 -13.44178 -13.06093 -13.00777 -12.94508 -12.80893 -12.70588 -12.43203 -12.25078 -12.06716 -12.01136 -11.97205 -11.77179 -11.40536 -10.87757 -10.86183 -10.72251 -10.16436 -9.70017 -8.87056 -7.76404 -5.20199 1.43753 1.49582 1.50026 1.58275 1.58850 1.87512 2.29051 2.51337 3.21931 3.34899 3.52235 3.60645 3.67174 3.74961 3.80443 3.94901 4.07080 4.13003 4.23270 4.39154 4.45849 4.51261 4.61820 4.65216 4.69167 4.72055 4.84617 4.91075 4.97502 4.98216 5.03969 5.14452 5.16545 5.43857 5.50101 5.65637 5.75901 5.83561 6.24252 6.32142 6.37109 7.05716 7.13006 7.15028 7.79746 8.40671 9.24583 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.004071 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.664280 B = 6876.085042 C = 7585.061180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.596 5.596 3 C 0.529 3.471 4 O -0.565 6.565 5 C -0.127 4.127 6 H 0.113 0.887 7 C -0.095 4.095 8 C -0.129 4.129 9 C 0.516 3.484 10 O -0.605 6.605 11 N -0.708 5.708 12 C 0.121 3.879 13 C 0.134 3.866 14 H 0.120 0.880 15 C -0.136 4.136 16 C 0.153 3.847 17 N -0.622 5.622 18 C -0.237 4.237 19 H 0.078 0.922 20 C -0.060 4.060 21 N -0.945 5.945 22 Si 0.973 3.027 23 H -0.289 1.289 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.122 3.878 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.408 0.592 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.074 0.926 40 H -0.003 1.003 41 H 0.247 0.753 42 H 0.028 0.972 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 14.793 2.707 15.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.327 5.327 3 C 0.317 3.683 4 O -0.444 6.444 5 C -0.149 4.149 6 H 0.131 0.869 7 C -0.133 4.133 8 C -0.168 4.168 9 C 0.305 3.695 10 O -0.488 6.488 11 N -0.359 5.359 12 C -0.003 4.003 13 C 0.030 3.970 14 H 0.137 0.863 15 C -0.175 4.175 16 C 0.028 3.972 17 N -0.349 5.349 18 C -0.366 4.366 19 H 0.096 0.904 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.802 3.198 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.197 1.197 26 C -0.004 4.004 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.244 0.756 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.015 0.985 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.161 15.316 2.621 15.688 hybrid contribution -0.071 -1.496 -0.376 1.544 sum 2.090 13.820 2.245 14.156 Atomic orbital electron populations 1.21622 0.78840 1.02673 1.02438 1.47910 1.07414 1.05462 1.71866 1.20469 0.89807 0.82627 0.75405 1.90686 1.70894 1.31905 1.50872 1.21691 0.91174 1.01867 1.00124 0.86902 1.21421 0.93867 0.94328 1.03651 1.21675 0.94841 1.03437 0.96886 1.20690 0.87118 0.78083 0.83658 1.90747 1.17209 1.64489 1.76351 1.45388 1.08663 1.49740 1.32091 1.21436 0.79483 1.03529 0.95894 1.22282 0.97116 0.82249 0.95320 0.86265 1.23260 1.01426 0.94732 0.98086 1.21774 0.97817 0.94868 0.82741 1.44654 1.84445 1.01699 1.04060 1.19381 1.40879 0.86660 0.89707 0.90393 1.25502 1.02649 0.99267 0.97866 1.70006 1.57843 1.18158 1.13441 0.85153 0.77418 0.79017 0.78186 1.21598 1.22086 1.19658 1.21735 0.98382 0.84542 0.95746 0.91609 0.91187 0.91074 0.89314 0.90428 0.86555 0.86637 0.75579 0.89810 0.88262 0.88736 0.91120 0.90789 0.98515 0.94323 0.95410 0.95264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.06 8.74 127.77 1.12 3.17 16 2 N -0.60 -14.30 2.86 -815.96 -2.34 -16.64 16 3 C 0.53 12.22 6.83 87.66 0.60 12.82 16 4 O -0.56 -16.20 15.90 -3.02 -0.05 -16.24 16 5 C -0.13 -2.23 1.71 -11.45 -0.02 -2.25 16 6 H 0.11 1.92 7.18 -2.38 -0.02 1.90 16 7 C -0.09 -1.52 4.67 30.71 0.14 -1.38 16 8 C -0.13 -2.03 6.03 29.69 0.18 -1.86 16 9 C 0.52 11.24 7.72 87.72 0.68 11.92 16 10 O -0.61 -18.55 17.78 -3.02 -0.05 -18.60 16 11 N -0.71 -12.32 5.45 -467.32 -2.55 -14.87 16 12 C 0.12 1.84 6.20 86.49 0.54 2.38 16 13 C 0.13 3.56 2.75 46.17 0.13 3.69 16 14 H 0.12 2.66 4.31 -2.39 -0.01 2.65 16 15 C -0.14 -4.07 6.56 32.06 0.21 -3.86 16 16 C 0.15 6.62 5.89 86.93 0.51 7.13 16 17 N -0.62 -28.84 3.40 -691.57 -2.35 -31.19 16 18 C -0.24 -12.45 10.27 84.03 0.86 -11.58 16 19 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 20 C -0.06 -3.21 5.49 84.86 0.47 -2.74 16 21 N -0.94 -52.99 10.09 21.65 0.22 -52.77 16 22 Si 0.97 43.64 29.55 68.60 2.03 45.66 16 23 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 C 0.12 4.34 6.78 86.73 0.59 4.93 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.66 7.68 -2.38 -0.02 1.64 16 29 H 0.07 1.84 6.71 -2.39 -0.02 1.82 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.32 8.12 -2.38 -0.02 1.30 16 32 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.41 6.49 8.80 -92.71 -0.82 5.67 16 35 H 0.08 1.20 8.11 -2.38 -0.02 1.18 16 36 H 0.10 1.36 6.23 -2.39 -0.01 1.35 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.13 6.66 -2.39 -0.02 2.12 16 39 H 0.07 3.78 5.87 -2.39 -0.01 3.76 16 40 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 41 H 0.25 13.57 8.31 -92.70 -0.77 12.80 16 42 H 0.03 1.01 6.98 -2.39 -0.02 0.99 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -68.89 335.78 1.12 -67.76 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.21 Total: 14.50 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 6.00 Total: 22.38 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -7.01 Total: -115.47 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.10 Total: -34.84 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -68.89 1.12 -67.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033222321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.745 kcal (2) G-P(sol) polarization free energy of solvation -68.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds