Wall clock time and date at job start Tue Mar 31 2020 03:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34770 * 120.00368 * 2 1 4 4 O 1.21277 * 120.00268 * 185.27161 * 3 2 1 5 5 C 1.50709 * 119.99911 * 5.27394 * 3 2 1 6 6 H 1.09003 * 110.53457 * 323.05374 * 5 3 2 7 7 C 1.54627 * 110.48678 * 200.44510 * 5 3 2 8 8 C 1.54661 * 101.68336 * 216.30703 * 7 5 3 9 9 N 1.46765 * 105.38192 * 25.76719 * 8 7 5 10 10 C 1.46498 * 124.35003 * 162.85430 * 9 8 7 11 11 C 1.34419 * 111.29886 * 342.59075 * 9 8 7 12 12 O 1.21281 * 124.94000 * 180.69686 * 11 9 8 13 13 C 1.46500 * 119.99774 * 179.97438 * 2 1 3 14 14 H 1.08997 * 110.88805 * 183.88606 * 13 2 1 15 15 C 1.55155 * 111.00586 * 60.00333 * 13 2 1 16 16 C 1.54330 * 102.94227 * 277.42493 * 15 13 2 17 17 N 1.47022 * 107.27132 * 337.80792 * 16 15 13 18 18 C 1.36940 * 125.64966 * 178.98366 * 17 16 15 19 19 H 1.07999 * 119.99905 * 179.97438 * 18 17 16 20 20 C 1.38812 * 119.99870 * 359.97438 * 18 17 16 21 21 N 1.31623 * 119.99988 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99831 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47114 * 90.00261 * 22 20 18 24 24 H 1.48505 * 109.46768 * 210.00137 * 22 20 18 25 25 H 1.48499 * 109.47219 * 329.99501 * 22 20 18 26 26 C 1.47424 * 108.70254 * 358.93823 * 17 16 15 27 27 H 1.08999 * 109.47459 * 95.22816 * 1 2 3 28 28 H 1.09001 * 109.47616 * 215.22704 * 1 2 3 29 29 H 1.09003 * 109.46936 * 335.22800 * 1 2 3 30 30 H 1.09004 * 110.96502 * 334.64043 * 7 5 3 31 31 H 1.09001 * 110.96623 * 98.36515 * 7 5 3 32 32 H 1.08992 * 110.39833 * 266.73901 * 8 7 5 33 33 H 1.09004 * 110.17592 * 144.68267 * 8 7 5 34 34 H 1.08992 * 109.47158 * 179.72938 * 10 9 8 35 35 H 1.09005 * 109.46668 * 299.72723 * 10 9 8 36 36 H 1.08994 * 109.46933 * 59.72011 * 10 9 8 37 37 H 1.09000 * 110.72007 * 35.78203 * 15 13 2 38 38 H 1.08998 * 110.72505 * 159.06684 * 15 13 2 39 39 H 1.09010 * 109.88057 * 97.22036 * 16 15 13 40 40 H 1.08998 * 109.88598 * 218.22975 * 16 15 13 41 41 H 0.97002 * 119.99747 * 179.97438 * 21 20 18 42 42 H 1.08999 * 110.36784 * 265.29115 * 26 17 16 43 43 H 1.08999 * 110.37099 * 142.96760 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3478 1.1693 -0.0965 5 6 1.3902 2.4696 0.1200 6 1 0.4464 2.4195 -0.4231 7 6 2.2540 3.6405 -0.4031 8 6 1.8646 4.7767 0.5712 9 7 1.4290 4.1032 1.8004 10 6 1.3107 4.7592 3.1049 11 6 1.1472 2.8085 1.5741 12 8 0.7547 2.0261 2.4136 13 6 2.1974 -1.2688 0.0006 14 1 3.2716 -1.0973 0.0695 15 6 1.8483 -2.1130 -1.2535 16 6 0.5310 -2.8069 -0.8473 17 7 0.4792 -2.8193 0.6219 18 6 -0.5406 -3.3294 1.3803 19 1 -0.4835 -3.2907 2.4581 20 6 -1.6475 -3.8964 0.7637 21 7 -1.7172 -3.9430 -0.5498 22 14 -3.0388 -4.5917 1.7982 23 1 -4.0404 -3.5272 2.0604 24 1 -3.6861 -5.7116 1.0687 25 1 -2.4959 -5.0892 3.0878 26 6 1.7073 -2.1924 1.1436 27 1 -0.3634 -0.0936 -1.0234 28 1 -0.3634 -0.8395 0.5928 29 1 -0.3633 0.9331 0.4306 30 1 3.3158 3.4050 -0.3298 31 1 1.9834 3.8977 -1.4272 32 1 1.0494 5.3697 0.1569 33 1 2.7279 5.4105 0.7740 34 1 0.9641 4.0375 3.8444 35 1 2.2835 5.1486 3.4053 36 1 0.5966 5.5798 3.0354 37 1 1.6943 -1.4705 -2.1203 38 1 2.6269 -2.8497 -1.4515 39 1 -0.3185 -2.2505 -1.2435 40 1 0.5163 -3.8275 -1.2297 41 1 -2.4906 -4.3395 -0.9806 42 1 2.4566 -2.9524 1.3649 43 1 1.4850 -1.6067 2.0356 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033342101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:30 Heat of formation + Delta-G solvation = -41.941538 kcal Electronic energy + Delta-G solvation = -25341.978133 eV Core-core repulsion = 21808.840150 eV Total energy + Delta-G solvation = -3533.137983 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -42.15243 -40.59926 -38.98887 -37.52157 -35.87409 -34.29381 -33.54796 -31.20460 -29.70759 -28.82103 -27.74774 -27.50318 -26.19480 -23.82336 -22.03839 -21.94548 -20.89411 -19.77233 -18.93114 -18.71771 -17.77196 -17.61227 -17.08388 -16.66707 -16.27602 -16.01825 -15.65460 -15.33490 -14.84378 -14.74197 -14.53701 -14.08633 -13.93349 -13.73443 -13.54652 -13.42604 -13.37611 -13.27097 -12.97879 -12.84341 -12.78018 -12.66613 -12.36068 -12.06413 -12.01768 -11.93066 -11.81641 -11.54374 -11.04787 -10.87737 -10.71481 -9.75632 -9.70397 -8.79315 -7.83203 -5.18022 1.14904 1.47280 1.47755 1.51226 1.56461 1.95289 2.16033 2.50125 3.22358 3.29047 3.35928 3.59607 3.67503 3.88942 3.96373 3.98431 4.09268 4.28521 4.33999 4.36050 4.41854 4.62881 4.64226 4.66228 4.68922 4.71786 4.85799 4.86477 4.93602 4.98590 5.03528 5.17782 5.23850 5.46944 5.50117 5.54878 5.68353 5.79868 5.95531 6.20036 6.41061 6.99845 7.02479 7.12646 7.76577 8.41405 9.26289 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.020293 B = 0.004630 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.441881 B = 6046.471069 C = 6848.569177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.582 5.582 3 C 0.528 3.472 4 O -0.572 6.572 5 C -0.150 4.150 6 H 0.147 0.853 7 C -0.112 4.112 8 C 0.104 3.896 9 N -0.619 5.619 10 C 0.089 3.911 11 C 0.516 3.484 12 O -0.564 6.564 13 C 0.132 3.868 14 H 0.107 0.893 15 C -0.137 4.137 16 C 0.188 3.812 17 N -0.614 5.614 18 C -0.240 4.240 19 H 0.072 0.928 20 C -0.053 4.053 21 N -0.943 5.943 22 Si 0.971 3.029 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.276 1.276 26 C 0.125 3.875 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.028 0.972 40 H 0.008 0.992 41 H 0.248 0.752 42 H 0.039 0.961 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.735 21.234 -1.468 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.311 5.311 3 C 0.316 3.684 4 O -0.452 6.452 5 C -0.174 4.174 6 H 0.165 0.835 7 C -0.150 4.150 8 C -0.017 4.017 9 N -0.353 5.353 10 C -0.052 4.052 11 C 0.303 3.697 12 O -0.443 6.443 13 C 0.027 3.973 14 H 0.125 0.875 15 C -0.176 4.176 16 C 0.063 3.937 17 N -0.341 5.341 18 C -0.369 4.369 19 H 0.090 0.910 20 C -0.247 4.247 21 N -0.592 5.592 22 Si 0.800 3.200 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.201 1.201 26 C -0.001 4.001 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.145 0.855 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.026 0.974 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.952 20.770 -1.012 21.926 hybrid contribution -1.084 -1.070 0.657 1.658 sum 5.868 19.700 -0.355 20.559 Atomic orbital electron populations 1.21941 0.78364 1.03733 1.02046 1.47646 1.07729 1.05219 1.70548 1.20301 0.87332 0.85316 0.75446 1.90612 1.14888 1.87436 1.52269 1.22233 1.03793 0.94683 0.96672 0.83529 1.22765 1.00338 0.90303 1.01565 1.22476 1.02271 0.94929 0.82054 1.48296 1.65670 1.09552 1.11779 1.21755 1.03491 0.97899 0.82048 1.20590 0.76712 0.83009 0.89430 1.90785 1.48059 1.53682 1.51791 1.22121 0.96408 0.82708 0.96018 0.87493 1.23109 0.98811 0.98777 0.96946 1.20965 0.93187 0.96539 0.83016 1.44708 1.17793 1.69147 1.02423 1.19282 0.96184 1.31431 0.90004 0.90970 1.25460 1.00475 1.01836 0.96887 1.70151 1.30290 1.50717 1.08001 0.85191 0.79468 0.77513 0.77811 1.21286 1.21882 1.20121 1.21956 0.89166 0.93730 0.95241 0.92375 0.90446 0.91019 0.89615 0.85467 0.87622 0.87467 0.92296 0.89928 0.89160 0.90235 0.89631 0.95394 0.97371 0.94303 0.94378 0.95085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.11 8.36 127.77 1.07 4.17 16 2 N -0.58 -21.51 2.91 -814.83 -2.37 -23.88 16 3 C 0.53 17.80 6.78 87.66 0.59 18.39 16 4 O -0.57 -21.44 14.99 -3.02 -0.05 -21.48 16 5 C -0.15 -3.70 2.35 -11.55 -0.03 -3.73 16 6 H 0.15 3.05 6.76 -2.39 -0.02 3.04 16 7 C -0.11 -1.74 6.62 31.71 0.21 -1.53 16 8 C 0.10 1.14 7.36 86.89 0.64 1.78 16 9 N -0.62 -12.21 3.33 -842.56 -2.81 -15.01 16 10 C 0.09 1.36 11.14 127.77 1.42 2.78 16 11 C 0.52 15.00 7.17 87.90 0.63 15.63 16 12 O -0.56 -22.16 16.59 -3.03 -0.05 -22.21 16 13 C 0.13 5.11 3.65 46.38 0.17 5.28 16 14 H 0.11 4.00 7.04 -2.39 -0.02 3.98 16 15 C -0.14 -5.21 6.48 31.78 0.21 -5.00 16 16 C 0.19 9.10 4.36 86.73 0.38 9.48 16 17 N -0.61 -31.62 1.89 -691.96 -1.31 -32.93 16 18 C -0.24 -13.57 9.80 84.03 0.82 -12.75 16 19 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 20 C -0.05 -2.98 5.49 84.86 0.47 -2.51 16 21 N -0.94 -55.28 10.31 21.65 0.22 -55.06 16 22 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 C 0.13 5.58 6.36 86.86 0.55 6.13 16 27 H 0.06 2.08 7.62 -2.39 -0.02 2.06 16 28 H 0.08 3.66 5.10 -2.39 -0.01 3.65 16 29 H 0.07 2.45 5.31 -2.39 -0.01 2.43 16 30 H 0.09 1.69 6.89 -2.38 -0.02 1.68 16 31 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 1.22 7.53 -2.39 -0.02 1.20 16 35 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.03 1.47 6.23 -2.38 -0.01 1.45 16 40 H 0.01 0.44 7.50 -2.39 -0.02 0.42 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -75.68 336.21 3.81 -71.87 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.01 Total: 12.46 kcal Atomic # 6 Polarization: 30.98 SS G_CDS: 7.13 Total: 38.12 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -6.27 Total: -126.89 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.10 Total: -43.69 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -75.68 3.81 -71.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033342101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.932 kcal (2) G-P(sol) polarization free energy of solvation -75.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds