Wall clock time and date at job start Tue Mar 31 2020 03:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45760 * 117.94848 * 2 1 4 4 C 1.52934 * 110.47686 * 160.91324 * 3 2 1 5 5 C 1.53341 * 108.66844 * 50.78241 * 4 3 2 6 6 H 1.08999 * 109.70137 * 52.20610 * 5 4 3 7 7 C 1.50701 * 109.67541 * 172.72295 * 5 4 3 8 8 O 1.21280 * 119.99781 * 358.96314 * 7 5 4 9 9 N 1.34771 * 119.99622 * 178.96990 * 7 5 4 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.73978 * 304.67041 * 11 10 9 13 13 C 1.53497 * 113.46972 * 173.92134 * 11 10 9 14 14 C 1.53618 * 83.30568 * 219.16943 * 13 11 10 15 15 N 1.47068 * 88.00367 * 26.02228 * 14 13 11 16 16 C 1.36934 * 136.05739 * 152.96989 * 15 14 13 17 17 H 1.07996 * 120.00101 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00234 * 359.94105 * 16 15 14 19 19 N 1.31625 * 119.99477 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00229 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47041 * 90.00390 * 20 18 16 22 22 H 1.48503 * 109.47160 * 210.00096 * 20 18 16 23 23 H 1.48495 * 109.47360 * 330.00375 * 20 18 16 24 24 C 1.53069 * 108.42231 * 292.45661 * 5 4 3 25 25 C 1.33359 * 117.94658 * 180.02562 * 2 1 3 26 26 O 1.21276 * 118.24153 * 2.24875 * 25 2 1 27 27 H 1.08992 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46939 * 299.98056 * 1 2 3 29 29 H 1.09001 * 109.46703 * 59.97590 * 1 2 3 30 30 H 1.08997 * 109.29925 * 281.23654 * 3 2 1 31 31 H 1.08998 * 109.29735 * 40.61504 * 3 2 1 32 32 H 1.09004 * 109.61811 * 291.01607 * 4 3 2 33 33 H 1.09006 * 109.59401 * 170.53535 * 4 3 2 34 34 H 0.96996 * 120.00772 * 359.97438 * 9 7 5 35 35 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 36 36 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 37 37 H 1.09001 * 114.20420 * 332.74048 * 13 11 10 38 38 H 1.09003 * 114.20512 * 105.57017 * 13 11 10 39 39 H 1.09002 * 113.41324 * 271.24334 * 14 13 11 40 40 H 1.08998 * 113.50541 * 140.81839 * 14 13 11 41 41 H 0.97004 * 119.99528 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.39807 * 169.02830 * 24 5 4 43 43 H 1.09001 * 109.40285 * 288.85521 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1256 0.4685 5 6 4.2493 -0.0013 -0.3397 6 1 4.1093 0.1815 -1.4051 7 6 5.7218 -0.0626 -0.0247 8 8 6.2087 0.7293 0.7543 9 7 6.4974 -0.9973 -0.6086 10 6 7.9289 -1.0565 -0.3028 11 6 8.5721 -2.1991 -1.0914 12 1 8.0865 -3.1588 -0.9144 13 6 10.0999 -2.2524 -0.9540 14 6 10.0416 -2.6128 -2.4462 15 7 8.7613 -1.8926 -2.5173 16 6 8.0555 -1.2295 -3.4854 17 1 7.1039 -0.7783 -3.2464 18 6 8.5636 -1.1364 -4.7739 19 7 9.7235 -1.6862 -5.0651 20 14 7.6011 -0.2311 -6.0943 21 1 7.9969 1.2001 -6.1016 22 1 7.8939 -0.8324 -7.4202 23 1 6.1477 -0.3414 -5.8108 24 6 3.5838 -1.3240 0.0481 25 6 2.0900 -1.1781 -0.0005 26 8 1.4158 -2.1853 -0.0429 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5135 0.8901 29 1 -0.3633 0.5142 -0.8898 30 1 2.1399 1.6998 -1.0090 31 1 1.6271 1.9718 0.6697 32 1 3.6101 0.8720 1.5285 33 1 4.1384 2.0563 0.3050 34 1 6.1079 -1.6308 -1.2314 35 1 8.3991 -0.1132 -0.5805 36 1 8.0656 -1.2303 0.7646 37 1 10.5638 -1.2885 -0.7448 38 1 10.4633 -3.0561 -0.3135 39 1 9.9483 -3.6832 -2.6299 40 1 10.8330 -2.1507 -3.0363 41 1 10.0783 -1.6215 -5.9656 42 1 3.8943 -2.1032 -0.6481 43 1 3.8868 -1.5994 1.0583 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038419555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:32 Heat of formation + Delta-G solvation = -40.066829 kcal Electronic energy + Delta-G solvation = -24349.795329 eV Core-core repulsion = 20816.738640 eV Total energy + Delta-G solvation = -3533.056689 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.83803 -40.65410 -39.71619 -37.42548 -35.53036 -35.08562 -34.20593 -30.88113 -29.96832 -29.42604 -28.03204 -25.66408 -25.37835 -24.28489 -23.08625 -21.44544 -20.85712 -19.73755 -18.85019 -18.12531 -17.72839 -17.31066 -17.05209 -16.91143 -16.65314 -16.19536 -15.76868 -15.34587 -15.28199 -15.12291 -14.52888 -14.47075 -14.30915 -13.66557 -13.51319 -13.30010 -13.22286 -12.94489 -12.79032 -12.71411 -12.67171 -12.56761 -12.28961 -12.05894 -12.01263 -11.82247 -11.62375 -11.37650 -11.05916 -10.83749 -10.51855 -9.98097 -9.76399 -8.87648 -7.85779 -5.17453 1.45350 1.46613 1.49659 1.54019 1.62028 2.00757 2.21841 2.48742 3.34441 3.38605 3.47302 3.56338 3.66526 3.70512 3.94562 4.11413 4.19581 4.24278 4.34957 4.37365 4.47408 4.59379 4.64031 4.66856 4.70439 4.72542 4.78652 4.91542 4.97584 4.99622 5.06879 5.12737 5.18487 5.34757 5.38181 5.48334 5.60649 5.75974 5.98426 6.34947 6.57438 6.94983 7.04277 7.23771 7.66232 8.65994 9.32032 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015408 B = 0.004228 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.818873 B = 6620.179182 C = 7500.377676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.606 5.606 3 C 0.114 3.886 4 C -0.111 4.111 5 C -0.104 4.104 6 H 0.114 0.886 7 C 0.518 3.482 8 O -0.578 6.578 9 N -0.712 5.712 10 C 0.130 3.870 11 C 0.133 3.867 12 H 0.068 0.932 13 C -0.135 4.135 14 C 0.142 3.858 15 N -0.629 5.629 16 C -0.205 4.205 17 H 0.090 0.910 18 C -0.072 4.072 19 N -0.955 5.955 20 Si 0.967 3.033 21 H -0.292 1.292 22 H -0.300 1.300 23 H -0.264 1.264 24 C -0.118 4.118 25 C 0.517 3.483 26 O -0.597 6.597 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.407 0.593 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.021 0.979 40 H 0.035 0.965 41 H 0.244 0.756 42 H 0.109 0.891 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.414 4.705 12.650 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.337 5.337 3 C -0.007 4.007 4 C -0.149 4.149 5 C -0.126 4.126 6 H 0.132 0.868 7 C 0.305 3.695 8 O -0.458 6.458 9 N -0.362 5.362 10 C 0.005 3.995 11 C 0.027 3.973 12 H 0.085 0.915 13 C -0.174 4.174 14 C 0.016 3.984 15 N -0.355 5.355 16 C -0.334 4.334 17 H 0.108 0.892 18 C -0.265 4.265 19 N -0.605 5.605 20 Si 0.796 3.204 21 H -0.219 1.219 22 H -0.227 1.227 23 H -0.188 1.188 24 C -0.158 4.158 25 C 0.306 3.694 26 O -0.479 6.479 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.242 0.758 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.038 0.962 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.127 0.873 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.472 4.903 12.856 19.969 hybrid contribution -0.122 -0.084 -1.590 1.597 sum -14.594 4.819 11.266 19.056 Atomic orbital electron populations 1.21901 0.78559 1.03881 1.03315 1.47381 1.08465 1.06309 1.71584 1.21648 0.91889 0.83541 1.03638 1.21694 0.94378 0.98799 1.00006 1.21444 0.90207 0.97139 1.03789 0.86754 1.20786 0.89161 0.79805 0.79768 1.90664 1.76213 1.41646 1.37286 1.46022 1.09399 1.34456 1.46280 1.21585 0.79985 0.98740 0.99147 1.22551 0.95349 0.95533 0.83907 0.91482 1.23500 0.94931 1.02267 0.96692 1.22063 0.89147 0.93876 0.93316 1.46002 1.22169 1.60790 1.06524 1.19228 1.01212 1.24526 0.88410 0.89215 1.25540 0.98588 1.02841 0.99501 1.70019 1.20404 1.50736 1.19326 0.85239 0.78753 0.77695 0.78694 1.21910 1.22722 1.18848 1.21580 0.90202 0.98065 1.05904 1.20203 0.90933 0.83029 0.75205 1.90692 1.66920 1.37347 1.52946 0.91274 0.89904 0.90343 0.89818 0.87341 0.90593 0.88551 0.75766 0.93838 0.90211 0.90208 0.88347 0.96169 0.94679 0.94687 0.87281 0.87197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 10.48 127.77 1.34 2.28 16 2 N -0.61 -10.67 3.21 -851.60 -2.73 -13.40 16 3 C 0.11 1.39 6.40 86.50 0.55 1.95 16 4 C -0.11 -1.84 4.71 30.69 0.14 -1.69 16 5 C -0.10 -2.14 2.60 -11.40 -0.03 -2.17 16 6 H 0.11 2.21 8.13 -2.39 -0.02 2.19 16 7 C 0.52 14.57 7.14 87.66 0.63 15.19 16 8 O -0.58 -19.91 15.89 -3.03 -0.05 -19.95 16 9 N -0.71 -20.98 5.32 -463.06 -2.46 -23.45 16 10 C 0.13 4.24 5.52 86.38 0.48 4.72 16 11 C 0.13 4.66 4.10 41.79 0.17 4.83 16 12 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 13 C -0.14 -4.51 8.04 30.97 0.25 -4.26 16 14 C 0.14 6.38 7.40 83.22 0.62 7.00 16 15 N -0.63 -29.55 3.65 -713.19 -2.60 -32.15 16 16 C -0.21 -10.66 10.55 84.03 0.89 -9.78 16 17 H 0.09 4.34 7.68 -2.91 -0.02 4.32 16 18 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 19 N -0.96 -56.92 11.51 21.65 0.25 -56.67 16 20 Si 0.97 44.68 29.55 68.60 2.03 46.71 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 C -0.12 -2.40 5.18 29.71 0.15 -2.25 16 25 C 0.52 12.21 7.47 87.71 0.66 12.87 16 26 O -0.60 -18.84 15.95 -3.02 -0.05 -18.89 16 27 H 0.07 1.35 6.59 -2.39 -0.02 1.34 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 0.79 8.10 -2.39 -0.02 0.78 16 32 H 0.08 1.33 8.12 -2.38 -0.02 1.31 16 33 H 0.10 1.67 7.89 -2.38 -0.02 1.66 16 34 H 0.41 11.48 8.16 -92.71 -0.76 10.73 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.08 2.68 8.12 -2.39 -0.02 2.66 16 38 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.03 1.82 7.12 -2.39 -0.02 1.81 16 41 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.11 2.22 7.92 -2.39 -0.02 2.20 16 43 H 0.11 2.15 8.10 -2.39 -0.02 2.13 16 Total: -1.00 -73.73 350.87 0.94 -72.80 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.25 Total: 19.85 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 6.31 Total: 25.16 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -7.55 Total: -125.67 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.10 Total: -38.85 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -73.73 0.94 -72.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038419555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.728 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds