Wall clock time and date at job start Tue Mar 31 2020 03:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45752 * 117.94520 * 2 1 4 4 C 1.52925 * 110.32049 * 199.15383 * 3 2 1 5 5 H 1.09004 * 109.60143 * 68.89990 * 4 3 2 6 6 C 1.50698 * 109.60198 * 189.38646 * 4 3 2 7 7 O 1.21280 * 119.99610 * 120.00264 * 6 4 3 8 8 N 1.34780 * 120.00215 * 300.00221 * 6 4 3 9 9 C 1.46497 * 119.99759 * 179.97438 * 8 6 4 10 10 C 1.53007 * 109.46715 * 179.97438 * 9 8 6 11 11 H 1.09000 * 112.73998 * 304.67143 * 10 9 8 12 12 C 1.53500 * 113.46511 * 173.92301 * 10 9 8 13 13 C 1.53604 * 83.30575 * 219.17173 * 12 10 9 14 14 N 1.47060 * 113.46435 * 75.41689 * 10 9 8 15 15 C 1.36937 * 136.05987 * 321.85944 * 14 10 9 16 16 H 1.08004 * 119.99858 * 0.02562 * 15 14 10 17 17 C 1.38806 * 120.00351 * 180.02562 * 15 14 10 18 18 N 1.31623 * 119.99969 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00170 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47084 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46891 * 120.00147 * 19 17 15 22 22 H 1.48497 * 109.47173 * 240.00243 * 19 17 15 23 23 C 1.53266 * 108.71493 * 308.95081 * 4 3 2 24 24 C 1.53069 * 108.24899 * 67.81107 * 23 4 3 25 25 C 1.33349 * 117.94783 * 179.97438 * 2 1 3 26 26 O 1.21287 * 118.24620 * 357.82047 * 25 2 1 27 27 H 1.08999 * 109.47351 * 89.99842 * 1 2 3 28 28 H 1.09001 * 109.47192 * 210.00039 * 1 2 3 29 29 H 1.08998 * 109.46939 * 329.99727 * 1 2 3 30 30 H 1.09002 * 109.30196 * 319.36523 * 3 2 1 31 31 H 1.08998 * 109.29923 * 78.94655 * 3 2 1 32 32 H 0.96997 * 119.99466 * 0.02562 * 8 6 4 33 33 H 1.08996 * 109.47750 * 299.99928 * 9 8 6 34 34 H 1.09002 * 109.47114 * 60.00495 * 9 8 6 35 35 H 1.09003 * 114.21015 * 332.74717 * 12 10 9 36 36 H 1.09000 * 114.20132 * 105.56568 * 12 10 9 37 37 H 1.08993 * 113.41966 * 271.24281 * 13 12 10 38 38 H 1.09004 * 113.50700 * 140.81749 * 13 12 10 39 39 H 0.97002 * 120.00180 * 179.97438 * 18 17 15 40 40 H 1.09008 * 109.81606 * 308.10590 * 23 4 3 41 41 H 1.08995 * 109.70729 * 187.46291 * 23 4 3 42 42 H 1.09001 * 109.39938 * 190.90467 * 24 23 4 43 43 H 1.08999 * 109.32758 * 71.12191 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5937 1.1219 -0.4705 5 1 3.6063 0.8665 -1.5301 6 6 4.3483 2.4071 -0.2478 7 8 5.3232 2.4206 0.4735 8 7 3.9399 3.5415 -0.8501 9 6 4.6732 4.7910 -0.6330 10 6 4.0071 5.9175 -1.4258 11 1 3.9153 5.6884 -2.4874 12 6 4.6128 7.3006 -1.1490 13 6 3.1485 7.7582 -1.2247 14 7 2.7567 6.3996 -0.8203 15 6 1.6945 5.8329 -0.1678 16 1 1.6691 4.7658 -0.0027 17 6 0.6504 6.6296 0.2814 18 7 0.6811 7.9300 0.0797 19 14 -0.7982 5.8565 1.1720 20 1 -0.5926 4.3891 1.2709 21 1 -0.9059 6.4338 2.5360 22 1 -2.0473 6.1321 0.4178 23 6 4.2492 -0.0013 0.3406 24 6 3.5838 -1.3240 -0.0476 25 6 2.0900 -1.1780 0.0005 26 8 1.4159 -2.1854 0.0416 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6273 1.9717 -0.6700 31 1 2.1427 1.6982 1.0096 32 1 3.1599 3.5307 -1.4266 33 1 4.6636 5.0384 0.4284 34 1 5.7032 4.6708 -0.9688 35 1 5.0624 7.4022 -0.1613 36 1 5.2428 7.6815 -1.9529 37 1 2.8281 8.0204 -2.2329 38 1 2.8928 8.5209 -0.4890 39 1 -0.0487 8.4868 0.3933 40 1 4.1082 0.1816 1.4059 41 1 5.3142 -0.0455 0.1131 42 1 3.8941 -2.1033 0.6485 43 1 3.8886 -1.5984 -1.0575 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039058280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:57 Heat of formation + Delta-G solvation = -17.409196 kcal Electronic energy + Delta-G solvation = -24654.462185 eV Core-core repulsion = 21122.388005 eV Total energy + Delta-G solvation = -3532.074180 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83916 -39.45968 -38.21154 -36.32824 -34.35728 -34.01729 -32.31583 -30.43702 -28.11939 -27.57251 -27.19103 -24.71993 -23.56587 -23.17016 -21.77407 -20.31128 -19.32167 -18.84788 -17.55026 -16.72460 -16.63200 -16.33186 -15.78240 -15.49862 -15.29998 -14.85490 -14.45611 -14.25643 -13.81071 -13.75443 -13.46243 -13.30104 -12.89795 -12.72532 -12.38986 -12.06025 -11.90153 -11.82174 -11.60442 -11.39418 -11.19858 -11.15330 -11.07247 -10.86835 -10.64394 -10.09223 -9.91626 -9.80153 -9.73995 -9.28887 -8.91047 -8.87822 -8.69786 -6.99300 -5.86433 -3.19372 2.51185 2.63431 2.94010 3.29318 3.31389 3.36993 3.38128 4.32203 4.37936 4.40781 4.50135 4.58390 5.05294 5.06635 5.11779 5.14188 5.24871 5.31046 5.37098 5.43535 5.48988 5.56537 5.58853 5.66418 5.75941 5.81944 5.83310 5.99420 6.02130 6.20505 6.24076 6.32829 6.51678 6.62083 6.76652 7.13551 7.28133 7.30960 7.48815 7.73581 7.87624 8.01381 8.38687 8.92404 9.60502 10.53643 11.30774 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.005165 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.201564 B = 5419.870578 C = 7073.201380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.603 5.603 3 C 0.120 3.880 4 C -0.124 4.124 5 H 0.105 0.895 6 C 0.519 3.481 7 O -0.543 6.543 8 N -0.711 5.711 9 C 0.120 3.880 10 C 0.127 3.873 11 H 0.048 0.952 12 C -0.161 4.161 13 C 0.151 3.849 14 N -0.601 5.601 15 C -0.215 4.215 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.916 5.916 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.291 1.291 23 C -0.103 4.103 24 C -0.133 4.133 25 C 0.514 3.486 26 O -0.559 6.559 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.403 0.597 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.253 0.747 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.919 -11.216 -3.620 13.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.336 5.336 3 C -0.003 4.003 4 C -0.146 4.146 5 H 0.123 0.877 6 C 0.304 3.696 7 O -0.421 6.421 8 N -0.361 5.361 9 C -0.004 4.004 10 C 0.019 3.981 11 H 0.065 0.935 12 C -0.200 4.200 13 C 0.026 3.974 14 N -0.327 5.327 15 C -0.342 4.342 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.563 5.563 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.218 1.218 23 C -0.141 4.141 24 C -0.173 4.173 25 C 0.303 3.697 26 O -0.439 6.439 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.237 0.763 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.946 -11.698 -2.896 13.438 hybrid contribution -1.388 -0.117 0.025 1.393 sum 4.558 -11.815 -2.871 12.985 Atomic orbital electron populations 1.21759 0.79085 1.03645 1.02326 1.47194 1.07725 1.05867 1.72800 1.21422 0.91018 0.84751 1.03155 1.21647 0.95006 0.95048 1.02878 0.87669 1.20106 0.84791 0.84645 0.80099 1.90689 1.27591 1.85946 1.37841 1.46028 1.32229 1.08608 1.49214 1.21846 0.94461 0.82459 1.01630 1.22416 0.88211 0.92256 0.95198 0.93470 1.23677 0.98698 0.96791 1.00875 1.22048 0.87311 0.90348 0.97737 1.45676 1.19600 1.04008 1.63455 1.18836 0.95450 0.91837 1.28079 0.90238 1.24779 0.98544 0.95634 1.01355 1.69831 1.32773 1.03098 1.50568 0.86136 0.82643 0.78115 0.79322 1.20530 1.21700 1.21751 1.21484 1.00814 0.91086 1.00687 1.21688 0.90844 0.99806 1.04947 1.20233 0.91081 0.82639 0.75761 1.90702 1.66615 1.35754 1.50800 0.92348 0.90093 0.90792 0.89347 0.90476 0.76265 0.90942 0.92177 0.90187 0.92317 0.95729 0.90972 0.93650 0.90335 0.89314 0.87793 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 10.24 59.85 0.61 1.46 16 2 N -0.60 -7.34 3.21 -182.85 -0.59 -7.93 16 3 C 0.12 1.39 5.48 -4.48 -0.02 1.36 16 4 C -0.12 -1.36 2.60 -91.67 -0.24 -1.60 16 5 H 0.11 0.96 8.12 -51.93 -0.42 0.53 16 6 C 0.52 7.44 7.14 -10.99 -0.08 7.36 16 7 O -0.54 -9.56 15.87 5.56 0.09 -9.48 16 8 N -0.71 -10.43 5.31 -60.29 -0.32 -10.75 16 9 C 0.12 1.97 5.52 -4.04 -0.02 1.95 16 10 C 0.13 2.25 4.10 -72.40 -0.30 1.95 16 11 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.16 -2.75 8.04 -26.16 -0.21 -2.96 16 13 C 0.15 3.28 7.40 -8.45 -0.06 3.22 16 14 N -0.60 -13.68 3.65 -176.82 -0.65 -14.33 16 15 C -0.21 -5.36 10.55 -15.06 -0.16 -5.52 16 16 H 0.08 1.85 7.68 -52.48 -0.40 1.45 16 17 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 18 N -0.92 -25.87 11.51 55.49 0.64 -25.23 16 19 Si 0.91 20.83 29.55 -169.99 -5.02 15.81 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.10 -1.06 4.71 -26.56 -0.13 -1.19 16 24 C -0.13 -1.29 6.02 -28.10 -0.17 -1.46 16 25 C 0.51 6.67 7.47 -11.87 -0.09 6.58 16 26 O -0.56 -9.15 16.18 5.55 0.09 -9.06 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.98 7.13 -51.93 -0.37 0.61 16 29 H 0.07 0.79 8.01 -51.93 -0.42 0.37 16 30 H 0.09 0.98 7.80 -51.93 -0.40 0.58 16 31 H 0.08 0.99 8.11 -51.93 -0.42 0.56 16 32 H 0.40 5.55 8.09 -40.82 -0.33 5.22 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.37 8.12 -51.93 -0.42 0.94 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 1.77 7.12 -51.93 -0.37 1.40 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.08 0.90 8.13 -51.92 -0.42 0.47 16 41 H 0.09 0.90 7.87 -51.93 -0.41 0.49 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -32.16 351.01 -8.34 -40.50 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.91 Total: 4.27 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -0.96 Total: 10.91 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.91 Total: -58.23 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.18 Total: -18.54 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.16 -8.34 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039058280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.089 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds