Wall clock time and date at job start Tue Mar 31 2020 03:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45752 * 117.94520 * 2 1 4 4 C 1.52925 * 110.32049 * 199.15383 * 3 2 1 5 5 H 1.09004 * 109.60143 * 68.89990 * 4 3 2 6 6 C 1.50698 * 109.60198 * 189.38646 * 4 3 2 7 7 O 1.21280 * 119.99610 * 120.00264 * 6 4 3 8 8 N 1.34780 * 120.00215 * 300.00221 * 6 4 3 9 9 C 1.46497 * 119.99759 * 179.97438 * 8 6 4 10 10 C 1.53007 * 109.46715 * 179.97438 * 9 8 6 11 11 H 1.09000 * 112.73998 * 304.67143 * 10 9 8 12 12 C 1.53500 * 113.46511 * 173.92301 * 10 9 8 13 13 C 1.53604 * 83.30575 * 219.17173 * 12 10 9 14 14 N 1.47060 * 113.46435 * 75.41689 * 10 9 8 15 15 C 1.36937 * 136.05987 * 321.85944 * 14 10 9 16 16 H 1.08004 * 119.99858 * 0.02562 * 15 14 10 17 17 C 1.38806 * 120.00351 * 180.02562 * 15 14 10 18 18 N 1.31623 * 119.99969 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00170 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47084 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46891 * 120.00147 * 19 17 15 22 22 H 1.48497 * 109.47173 * 240.00243 * 19 17 15 23 23 C 1.53266 * 108.71493 * 308.95081 * 4 3 2 24 24 C 1.53069 * 108.24899 * 67.81107 * 23 4 3 25 25 C 1.33349 * 117.94783 * 179.97438 * 2 1 3 26 26 O 1.21287 * 118.24620 * 357.82047 * 25 2 1 27 27 H 1.08999 * 109.47351 * 89.99842 * 1 2 3 28 28 H 1.09001 * 109.47192 * 210.00039 * 1 2 3 29 29 H 1.08998 * 109.46939 * 329.99727 * 1 2 3 30 30 H 1.09002 * 109.30196 * 319.36523 * 3 2 1 31 31 H 1.08998 * 109.29923 * 78.94655 * 3 2 1 32 32 H 0.96997 * 119.99466 * 0.02562 * 8 6 4 33 33 H 1.08996 * 109.47750 * 299.99928 * 9 8 6 34 34 H 1.09002 * 109.47114 * 60.00495 * 9 8 6 35 35 H 1.09003 * 114.21015 * 332.74717 * 12 10 9 36 36 H 1.09000 * 114.20132 * 105.56568 * 12 10 9 37 37 H 1.08993 * 113.41966 * 271.24281 * 13 12 10 38 38 H 1.09004 * 113.50700 * 140.81749 * 13 12 10 39 39 H 0.97002 * 120.00180 * 179.97438 * 18 17 15 40 40 H 1.09008 * 109.81606 * 308.10590 * 23 4 3 41 41 H 1.08995 * 109.70729 * 187.46291 * 23 4 3 42 42 H 1.09001 * 109.39938 * 190.90467 * 24 23 4 43 43 H 1.08999 * 109.32758 * 71.12191 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5937 1.1219 -0.4705 5 1 3.6063 0.8665 -1.5301 6 6 4.3483 2.4071 -0.2478 7 8 5.3232 2.4206 0.4735 8 7 3.9399 3.5415 -0.8501 9 6 4.6732 4.7910 -0.6330 10 6 4.0071 5.9175 -1.4258 11 1 3.9153 5.6884 -2.4874 12 6 4.6128 7.3006 -1.1490 13 6 3.1485 7.7582 -1.2247 14 7 2.7567 6.3996 -0.8203 15 6 1.6945 5.8329 -0.1678 16 1 1.6691 4.7658 -0.0027 17 6 0.6504 6.6296 0.2814 18 7 0.6811 7.9300 0.0797 19 14 -0.7982 5.8565 1.1720 20 1 -0.5926 4.3891 1.2709 21 1 -0.9059 6.4338 2.5360 22 1 -2.0473 6.1321 0.4178 23 6 4.2492 -0.0013 0.3406 24 6 3.5838 -1.3240 -0.0476 25 6 2.0900 -1.1780 0.0005 26 8 1.4159 -2.1854 0.0416 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6273 1.9717 -0.6700 31 1 2.1427 1.6982 1.0096 32 1 3.1599 3.5307 -1.4266 33 1 4.6636 5.0384 0.4284 34 1 5.7032 4.6708 -0.9688 35 1 5.0624 7.4022 -0.1613 36 1 5.2428 7.6815 -1.9529 37 1 2.8281 8.0204 -2.2329 38 1 2.8928 8.5209 -0.4890 39 1 -0.0487 8.4868 0.3933 40 1 4.1082 0.1816 1.4059 41 1 5.3142 -0.0455 0.1131 42 1 3.8941 -2.1033 0.6485 43 1 3.8886 -1.5984 -1.0575 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039058280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:56 Heat of formation + Delta-G solvation = -39.741385 kcal Electronic energy + Delta-G solvation = -24655.430582 eV Core-core repulsion = 21122.388005 eV Total energy + Delta-G solvation = -3533.042577 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.84567 -40.66895 -39.71412 -37.39041 -35.56023 -35.00754 -34.20273 -31.44417 -29.90354 -28.89030 -28.15089 -25.66189 -25.35994 -24.29056 -23.08314 -21.50185 -20.88497 -19.79741 -18.87265 -18.13275 -17.69591 -17.36691 -17.06054 -16.83801 -16.60515 -16.10547 -15.79145 -15.38116 -15.31020 -14.98021 -14.66936 -14.46502 -14.21306 -13.66527 -13.55553 -13.30580 -13.28533 -12.97350 -12.87815 -12.75105 -12.67224 -12.54529 -12.31539 -12.23882 -11.97041 -11.79619 -11.58625 -11.19610 -10.84667 -10.80236 -10.69546 -9.97904 -9.85870 -8.85699 -7.83947 -5.15314 1.45594 1.47392 1.52363 1.55436 1.55582 1.96290 2.24002 2.49672 3.37482 3.42238 3.50157 3.53067 3.61665 3.70323 3.96707 4.13969 4.19828 4.25435 4.31843 4.36784 4.40039 4.49422 4.57547 4.68251 4.70047 4.74541 4.84673 4.88008 4.93360 4.99904 5.09250 5.15351 5.17490 5.27522 5.37343 5.49420 5.62895 5.78268 5.99967 6.32983 6.58466 6.96467 7.03631 7.24615 7.68560 8.68100 9.34265 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.005165 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.201564 B = 5419.870578 C = 7073.201380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.603 5.603 3 C 0.122 3.878 4 C -0.113 4.113 5 H 0.134 0.866 6 C 0.522 3.478 7 O -0.576 6.576 8 N -0.709 5.709 9 C 0.130 3.870 10 C 0.135 3.865 11 H 0.071 0.929 12 C -0.137 4.137 13 C 0.141 3.859 14 N -0.628 5.628 15 C -0.199 4.199 16 H 0.095 0.905 17 C -0.073 4.073 18 N -0.956 5.956 19 Si 0.961 3.039 20 H -0.254 1.254 21 H -0.305 1.305 22 H -0.298 1.298 23 C -0.097 4.097 24 C -0.122 4.122 25 C 0.508 3.492 26 O -0.598 6.598 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.409 0.591 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.021 0.979 38 H 0.033 0.967 39 H 0.243 0.757 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.242 -12.960 -4.925 15.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.334 5.334 3 C -0.001 4.001 4 C -0.135 4.135 5 H 0.152 0.848 6 C 0.308 3.692 7 O -0.456 6.456 8 N -0.359 5.359 9 C 0.005 3.995 10 C 0.029 3.971 11 H 0.088 0.912 12 C -0.175 4.175 13 C 0.015 3.985 14 N -0.354 5.354 15 C -0.327 4.327 16 H 0.113 0.887 17 C -0.265 4.265 18 N -0.606 5.606 19 Si 0.791 3.209 20 H -0.177 1.177 21 H -0.234 1.234 22 H -0.226 1.226 23 C -0.135 4.135 24 C -0.162 4.162 25 C 0.298 3.702 26 O -0.481 6.481 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.245 0.755 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.039 0.961 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.132 0.868 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.294 -13.466 -4.226 15.887 hybrid contribution -1.727 0.440 0.407 1.828 sum 5.567 -13.026 -3.819 14.672 Atomic orbital electron populations 1.21816 0.78898 1.03431 1.02981 1.47266 1.08067 1.05944 1.72123 1.21402 0.91529 0.84538 1.02651 1.21614 0.93901 0.93257 1.04699 0.84792 1.20572 0.84342 0.85278 0.78992 1.90683 1.29254 1.86487 1.39171 1.45998 1.32326 1.08242 1.49379 1.21595 0.95559 0.82811 0.99549 1.22544 0.85594 0.93078 0.95921 0.91186 1.23502 0.96143 0.95639 1.02261 1.22059 0.90804 0.89356 0.96275 1.46006 1.20481 1.05161 1.63774 1.19288 0.95137 0.92468 1.25851 0.88701 1.25514 1.01408 0.96100 1.03528 1.70020 1.33226 1.04401 1.53003 0.85242 0.79672 0.78778 0.77162 1.17736 1.23360 1.22607 1.21430 1.01201 0.91115 0.99745 1.21683 0.88215 0.99603 1.06669 1.20833 0.92318 0.82155 0.74856 1.90689 1.67677 1.36954 1.52740 0.91278 0.91209 0.90093 0.88483 0.91845 0.75531 0.93903 0.90155 0.90359 0.88408 0.96091 0.94854 0.94826 0.91778 0.88613 0.86827 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.52 10.24 127.77 1.31 2.82 16 2 N -0.60 -13.42 3.21 -851.60 -2.73 -16.15 16 3 C 0.12 2.52 5.48 86.50 0.47 3.00 16 4 C -0.11 -2.13 2.60 -11.48 -0.03 -2.16 16 5 H 0.13 1.83 8.12 -2.39 -0.02 1.81 16 6 C 0.52 13.59 7.14 87.66 0.63 14.21 16 7 O -0.58 -19.16 15.87 -3.03 -0.05 -19.21 16 8 N -0.71 -18.79 5.31 -463.06 -2.46 -21.25 16 9 C 0.13 3.92 5.52 86.38 0.48 4.39 16 10 C 0.13 4.41 4.10 41.79 0.17 4.58 16 11 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 12 C -0.14 -4.34 8.04 30.97 0.25 -4.09 16 13 C 0.14 6.10 7.40 83.21 0.62 6.71 16 14 N -0.63 -27.99 3.65 -713.33 -2.61 -30.59 16 15 C -0.20 -9.78 10.55 84.03 0.89 -8.89 16 16 H 0.10 4.23 7.68 -2.91 -0.02 4.21 16 17 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 18 N -0.96 -55.72 11.51 21.65 0.25 -55.47 16 19 Si 0.96 43.09 29.55 68.60 2.03 45.11 16 20 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.31 -14.32 7.11 99.48 0.71 -13.62 16 22 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 23 C -0.10 -1.75 4.71 30.71 0.14 -1.60 16 24 C -0.12 -2.02 6.02 29.71 0.18 -1.84 16 25 C 0.51 12.18 7.47 87.71 0.65 12.84 16 26 O -0.60 -18.90 16.18 -3.05 -0.05 -18.95 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.65 7.13 -2.39 -0.02 1.63 16 29 H 0.08 1.58 8.01 -2.39 -0.02 1.56 16 30 H 0.10 1.86 7.80 -2.39 -0.02 1.84 16 31 H 0.06 1.51 8.11 -2.39 -0.02 1.49 16 32 H 0.41 9.91 8.09 -92.71 -0.75 9.16 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 2.53 8.12 -2.39 -0.02 2.51 16 36 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.03 1.69 7.12 -2.38 -0.02 1.67 16 39 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 40 H 0.06 1.35 8.13 -2.38 -0.02 1.33 16 41 H 0.10 1.65 7.87 -2.39 -0.02 1.63 16 42 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -71.15 351.01 0.86 -70.29 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.25 Total: 19.66 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: 6.22 Total: 26.54 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -7.55 Total: -123.46 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.10 Total: -38.15 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -71.15 0.86 -70.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039058280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.551 kcal (2) G-P(sol) polarization free energy of solvation -71.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds