Wall clock time and date at job start Tue Mar 31 2020 03:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21277 * 119.99695 * 2 1 4 4 N 1.34776 * 119.99694 * 179.97438 * 2 1 3 5 5 C 1.47423 * 125.65046 * 359.94521 * 4 2 1 6 6 C 1.54903 * 104.83209 * 155.91810 * 5 4 2 7 7 C 1.55163 * 101.58332 * 37.01134 * 6 5 4 8 8 C 1.47018 * 125.64643 * 180.02562 * 4 2 1 9 9 H 1.09004 * 109.88279 * 300.43217 * 8 4 2 10 10 C 1.50705 * 110.01156 * 61.52000 * 8 4 2 11 11 O 1.21277 * 119.99847 * 18.20596 * 10 8 4 12 12 N 1.34778 * 119.99996 * 198.19817 * 10 8 4 13 13 C 1.46493 * 119.99831 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47275 * 180.02562 * 13 12 10 15 15 H 1.08999 * 112.96303 * 304.66590 * 14 13 12 16 16 C 1.53949 * 113.77332 * 172.98941 * 14 13 12 17 17 C 1.53942 * 86.28839 * 222.09193 * 16 14 13 18 18 N 1.47575 * 113.77176 * 76.34366 * 14 13 12 19 19 C 1.36939 * 134.49189 * 318.93968 * 18 14 13 20 20 H 1.07997 * 119.99843 * 7.01591 * 19 18 14 21 21 C 1.38814 * 119.99989 * 187.02253 * 19 18 14 22 22 N 1.31618 * 120.00114 * 7.58595 * 21 19 18 23 23 Si 1.86804 * 119.99787 * 187.59030 * 21 19 18 24 24 H 1.48498 * 109.47143 * 94.80610 * 23 21 19 25 25 H 1.48502 * 109.46903 * 214.80533 * 23 21 19 26 26 H 1.48499 * 109.47109 * 334.80673 * 23 21 19 27 27 H 1.08997 * 109.47291 * 270.00090 * 1 2 3 28 28 H 1.09007 * 109.46764 * 30.00219 * 1 2 3 29 29 H 1.08996 * 109.47072 * 149.99823 * 1 2 3 30 30 H 1.09001 * 110.36427 * 37.08226 * 5 4 2 31 31 H 1.09000 * 110.36672 * 274.76235 * 5 4 2 32 32 H 1.08994 * 111.00755 * 278.93908 * 6 5 4 33 33 H 1.09004 * 111.03752 * 155.09982 * 6 5 4 34 34 H 1.09001 * 110.72133 * 206.13269 * 7 6 5 35 35 H 1.09004 * 110.71649 * 82.85889 * 7 6 5 36 36 H 0.96997 * 119.99934 * 0.02562 * 12 10 8 37 37 H 1.09004 * 109.47565 * 300.00381 * 13 12 10 38 38 H 1.08997 * 109.47454 * 60.00006 * 13 12 10 39 39 H 1.09004 * 113.73900 * 336.43857 * 16 14 13 40 40 H 1.08999 * 113.74121 * 107.63313 * 16 14 13 41 41 H 1.09001 * 113.77011 * 137.91204 * 17 16 14 42 42 H 1.09004 * 113.76671 * 269.18984 * 17 16 14 43 43 H 0.97001 * 119.99669 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5730 -2.5103 0.0023 6 6 2.6544 -3.4358 -0.6088 7 6 3.9549 -2.8233 -0.0247 8 6 3.6439 -1.3120 0.0011 9 1 4.0643 -0.8320 -0.8827 10 6 4.2231 -0.6905 1.2459 11 8 3.5107 -0.4731 2.2030 12 7 5.5329 -0.3765 1.2956 13 6 6.0960 0.2271 2.5058 14 6 7.5904 0.4828 2.3003 15 1 8.1395 -0.4136 2.0120 16 6 8.2485 1.2716 3.4469 17 6 8.9905 2.0546 2.3487 18 7 7.8824 1.6568 1.4551 19 6 7.3425 2.1702 0.3061 20 1 6.4401 1.7421 -0.1047 21 6 7.9552 3.2408 -0.3306 22 7 9.1305 3.6665 0.0814 23 14 7.1115 4.0773 -1.7721 24 1 6.3504 5.2555 -1.2845 25 1 8.1332 4.5200 -2.7546 26 1 6.1801 3.1213 -2.4232 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5138 30 1 0.6734 -2.5203 -0.6131 31 1 1.3401 -2.8200 1.0211 32 1 2.6494 -3.3770 -1.6971 33 1 2.5229 -4.4650 -0.2746 34 1 4.8049 -3.0314 -0.6746 35 1 4.1381 -3.1964 0.9830 36 1 6.1026 -0.5501 0.5300 37 1 5.5909 1.1713 2.7098 38 1 5.9553 -0.4496 3.3486 39 1 7.5479 1.8779 4.0211 40 1 8.9026 0.6679 4.0760 41 1 9.0437 3.1275 2.5337 42 1 9.9528 1.6221 2.0746 43 1 9.5584 4.4149 -0.3634 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039061993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:58 Heat of formation + Delta-G solvation = -40.903342 kcal Electronic energy + Delta-G solvation = -24756.477498 eV Core-core repulsion = 21223.384535 eV Total energy + Delta-G solvation = -3533.092963 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -41.72548 -40.23945 -39.44638 -38.16029 -35.54902 -34.26539 -33.13658 -31.30293 -30.11958 -29.85184 -28.69981 -25.33325 -25.08076 -23.77440 -22.53481 -21.80494 -21.00362 -20.20767 -18.88606 -18.24836 -18.20642 -17.17766 -17.10196 -16.70726 -16.25415 -16.15392 -15.70814 -15.51023 -15.17717 -14.92563 -14.46812 -14.31066 -13.96003 -13.67259 -13.49930 -13.32129 -13.27918 -13.07768 -13.05383 -12.77403 -12.69390 -12.62941 -12.31967 -12.08403 -11.93863 -11.80371 -11.55586 -11.38486 -11.03378 -10.91469 -10.84155 -10.06281 -9.74730 -8.91955 -7.94180 -5.22722 1.35440 1.39852 1.42546 1.46726 1.63489 1.93124 2.32327 2.44015 3.28382 3.32103 3.42978 3.53719 3.76523 3.85125 3.95346 4.06590 4.11797 4.17397 4.31182 4.40724 4.52784 4.55528 4.57443 4.67325 4.72184 4.80561 4.83811 4.89293 4.96983 5.02319 5.07068 5.08486 5.21881 5.28135 5.31094 5.43506 5.54536 5.71579 5.92665 6.42326 6.54610 6.92087 7.10578 7.21218 7.60472 8.56199 9.24018 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.004923 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.372383 B = 5685.821192 C = 6636.955571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.509 3.491 3 O -0.604 6.604 4 N -0.605 5.605 5 C 0.091 3.909 6 C -0.118 4.118 7 C -0.113 4.113 8 C 0.110 3.890 9 H 0.086 0.914 10 C 0.502 3.498 11 O -0.582 6.582 12 N -0.710 5.710 13 C 0.135 3.865 14 C 0.132 3.868 15 H 0.076 0.924 16 C -0.130 4.130 17 C 0.158 3.842 18 N -0.629 5.629 19 C -0.212 4.212 20 H 0.075 0.925 21 C -0.064 4.064 22 N -0.949 5.949 23 Si 0.959 3.041 24 H -0.299 1.299 25 H -0.287 1.287 26 H -0.275 1.275 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.407 0.593 37 H 0.028 0.972 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.025 0.975 42 H 0.029 0.971 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.309 -20.654 -0.252 25.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.300 3.700 3 O -0.485 6.485 4 N -0.339 5.339 5 C -0.030 4.030 6 C -0.155 4.155 7 C -0.151 4.151 8 C 0.001 3.999 9 H 0.103 0.897 10 C 0.289 3.711 11 O -0.462 6.462 12 N -0.360 5.360 13 C 0.010 3.990 14 C 0.026 3.974 15 H 0.093 0.907 16 C -0.168 4.168 17 C 0.033 3.967 18 N -0.356 5.356 19 C -0.341 4.341 20 H 0.093 0.907 21 C -0.257 4.257 22 N -0.599 5.599 23 Si 0.789 3.211 24 H -0.227 1.227 25 H -0.213 1.213 26 H -0.200 1.200 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.098 0.902 36 H 0.242 0.758 37 H 0.047 0.953 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.044 0.956 42 H 0.047 0.953 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.581 -19.684 0.160 24.497 hybrid contribution 0.391 1.454 -1.072 1.848 sum -14.190 -18.230 -0.912 23.120 Atomic orbital electron populations 1.21887 0.87057 1.06550 1.05861 1.21596 0.92556 0.81629 0.74182 1.90768 1.72266 1.33258 1.52217 1.48542 1.05143 1.07693 1.72489 1.22770 0.98473 0.79290 1.02482 1.22844 0.91029 0.99976 1.01681 1.22677 1.01352 0.87369 1.03704 1.21683 0.83348 1.00357 0.94472 0.89653 1.21424 0.81939 0.77726 0.90047 1.90603 1.60148 1.55820 1.39581 1.45912 1.09513 1.62045 1.18568 1.21501 0.93817 0.96412 0.87250 1.22689 0.92416 0.91710 0.90553 0.90713 1.23554 0.99293 0.98362 0.95621 1.22091 0.90686 0.97078 0.86843 1.46506 1.36219 1.26143 1.26733 1.19190 1.04249 1.11062 0.99559 0.90747 1.25405 0.97276 1.01129 1.01867 1.69980 1.16040 1.29196 1.44687 0.85347 0.77342 0.78663 0.79762 1.22675 1.21284 1.19976 0.87935 0.88965 0.86254 0.86843 0.90737 0.88870 0.86278 0.86933 0.90179 0.75768 0.95324 0.89986 0.90622 0.88178 0.95610 0.95328 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.90 71.24 0.71 -2.16 16 2 C 0.51 16.10 7.35 87.66 0.64 16.75 16 3 O -0.60 -27.51 16.90 -3.02 -0.05 -27.56 16 4 N -0.60 -15.52 2.76 -792.19 -2.19 -17.71 16 5 C 0.09 1.19 6.67 86.85 0.58 1.76 16 6 C -0.12 -1.05 7.09 31.99 0.23 -0.82 16 7 C -0.11 -1.76 6.47 31.79 0.21 -1.56 16 8 C 0.11 3.01 3.25 44.60 0.14 3.15 16 9 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 10 C 0.50 18.43 6.28 87.66 0.55 18.98 16 11 O -0.58 -25.61 16.12 -3.02 -0.05 -25.66 16 12 N -0.71 -25.65 5.33 -463.07 -2.47 -28.12 16 13 C 0.14 5.15 5.54 86.38 0.48 5.63 16 14 C 0.13 5.08 4.33 45.10 0.20 5.28 16 15 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 16 C -0.13 -4.63 7.86 31.25 0.25 -4.39 16 17 C 0.16 7.50 7.32 86.44 0.63 8.13 16 18 N -0.63 -32.03 3.57 -690.92 -2.47 -34.50 16 19 C -0.21 -12.16 10.49 84.03 0.88 -11.27 16 20 H 0.07 4.25 7.61 -2.91 -0.02 4.22 16 21 C -0.06 -3.79 5.49 84.86 0.47 -3.32 16 22 N -0.95 -59.04 11.78 21.65 0.26 -58.79 16 23 Si 0.96 49.35 29.56 68.60 2.03 51.38 16 24 H -0.30 -15.73 7.11 99.48 0.71 -15.03 16 25 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.27 -13.69 7.11 99.48 0.71 -12.98 16 27 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.12 1.15 6.52 -2.39 -0.02 1.13 16 30 H 0.11 0.75 6.75 -2.39 -0.02 0.74 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.32 7.84 -2.39 -0.02 1.30 16 36 H 0.41 13.75 8.47 -92.71 -0.79 12.96 16 37 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.08 2.73 8.14 -2.39 -0.02 2.72 16 39 H 0.08 2.73 8.10 -2.38 -0.02 2.71 16 40 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.03 1.37 7.71 -2.39 -0.02 1.35 16 42 H 0.03 1.37 8.14 -2.38 -0.02 1.36 16 43 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -89.13 354.40 1.24 -87.90 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.22 Total: 16.89 kcal Atomic # 6 Polarization: 30.20 SS G_CDS: 5.96 Total: 36.16 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -6.87 Total: -139.11 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.10 Total: -53.22 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.03 Total: 51.38 kcal Total: -89.13 1.24 -87.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039061993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.994 kcal (2) G-P(sol) polarization free energy of solvation -89.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds