Wall clock time and date at job start Tue Mar 31 2020 03:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34769 * 120.00372 * 2 1 4 4 O 1.21279 * 120.00179 * 179.72612 * 3 2 1 5 5 C 1.50700 * 119.99868 * 359.97438 * 3 2 1 6 6 C 1.53003 * 109.47144 * 179.72773 * 5 3 2 7 7 H 1.09004 * 109.60443 * 305.32343 * 6 5 3 8 8 C 1.53342 * 109.60550 * 185.00297 * 6 5 3 9 9 C 1.53074 * 108.42894 * 172.70983 * 8 6 5 10 10 C 1.50174 * 109.88584 * 48.90153 * 9 8 6 11 11 O 1.21280 * 118.24441 * 162.39578 * 10 9 8 12 12 N 1.33354 * 123.51320 * 342.41850 * 10 9 8 13 13 C 1.45760 * 124.10376 * 2.21947 * 12 10 9 14 14 C 1.46500 * 119.99490 * 179.97438 * 2 1 3 15 15 C 1.53941 * 113.74219 * 38.74743 * 14 2 1 16 16 N 1.47812 * 86.03486 * 222.08050 * 15 14 2 17 17 C 1.36947 * 134.45639 * 204.64241 * 16 15 14 18 18 H 1.08002 * 119.99914 * 173.34725 * 17 16 15 19 19 C 1.38810 * 119.99744 * 353.34637 * 17 16 15 20 20 N 1.31616 * 120.00359 * 5.07001 * 19 17 16 21 21 Si 1.86802 * 119.99525 * 185.06175 * 19 17 16 22 22 H 1.48494 * 109.47114 * 94.98956 * 21 19 17 23 23 H 1.48495 * 109.46958 * 214.98787 * 21 19 17 24 24 H 1.48498 * 109.47144 * 334.98939 * 21 19 17 25 25 C 1.47584 * 91.05210 * 24.54732 * 16 15 14 26 26 H 1.09005 * 109.47037 * 89.99817 * 1 2 3 27 27 H 1.08995 * 109.47384 * 210.00120 * 1 2 3 28 28 H 1.09004 * 109.46571 * 330.00690 * 1 2 3 29 29 H 1.08997 * 109.47481 * 299.73006 * 5 3 2 30 30 H 1.09003 * 109.47170 * 59.72984 * 5 3 2 31 31 H 1.09000 * 109.67636 * 292.44900 * 8 6 5 32 32 H 1.09007 * 109.67275 * 52.94011 * 8 6 5 33 33 H 1.09000 * 109.39917 * 169.02964 * 9 8 6 34 34 H 1.09000 * 109.39914 * 288.77464 * 9 8 6 35 35 H 0.96994 * 117.94914 * 182.22822 * 12 10 9 36 36 H 1.08997 * 109.30021 * 220.61491 * 13 12 10 37 37 H 1.09003 * 109.29465 * 101.23777 * 13 12 10 38 38 H 1.09002 * 112.94020 * 170.33156 * 14 2 1 39 39 H 1.08997 * 113.77157 * 336.34032 * 15 14 2 40 40 H 1.08998 * 113.77390 * 107.74540 * 15 14 2 41 41 H 0.96997 * 120.00229 * 180.02562 * 20 19 17 42 42 H 1.08997 * 113.76590 * 221.15375 * 25 16 15 43 43 H 1.09003 * 113.76592 * 89.75275 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0050 5 6 1.3855 2.4722 -0.0006 6 6 2.3798 3.6351 0.0064 7 1 3.0649 3.5255 0.8471 8 6 1.6199 4.9611 0.1318 9 6 2.6394 6.0872 0.3200 10 6 3.7224 5.9740 -0.7142 11 8 4.4210 6.9432 -0.9222 12 7 3.9567 4.8648 -1.4165 13 6 3.1677 3.6444 -1.3041 14 6 2.1974 -1.2688 0.0006 15 6 1.5555 -2.3554 -0.8809 16 7 1.8609 -3.2878 0.2246 17 6 2.0636 -4.6394 0.3110 18 1 2.3836 -5.0789 1.2442 19 6 1.8579 -5.4445 -0.8009 20 7 1.5653 -4.8998 -1.9628 21 14 1.9965 -7.3011 -0.6482 22 1 0.6487 -7.8810 -0.4195 23 1 2.5698 -7.8592 -1.8992 24 1 2.8813 -7.6390 0.4956 25 6 1.8619 -2.1776 1.1970 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3632 0.8901 0.5138 29 1 0.7628 2.5320 -0.8932 30 1 0.7548 2.5281 0.8867 31 1 1.0398 5.1387 -0.7738 32 1 0.9527 4.9217 0.9930 33 1 2.1388 7.0499 0.2162 34 1 3.0795 6.0147 1.3146 35 1 4.6988 4.8705 -2.0411 36 1 3.8330 2.7815 -1.3306 37 1 2.4733 3.5860 -2.1424 38 1 3.2668 -1.1421 -0.1681 39 1 0.4887 -2.2098 -1.0507 40 1 2.1090 -2.5619 -1.7969 41 1 1.4212 -5.4624 -2.7397 42 1 2.6598 -2.2424 1.9368 43 1 0.8853 -1.9796 1.6388 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042897249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:09 Heat of formation + Delta-G solvation = -46.151991 kcal Electronic energy + Delta-G solvation = -24004.249826 eV Core-core repulsion = 20470.929264 eV Total energy + Delta-G solvation = -3533.320562 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56706 -40.90140 -39.36233 -37.58392 -35.84176 -34.38836 -33.96811 -32.23546 -29.73053 -27.92496 -27.66150 -26.61030 -25.49770 -24.72524 -23.00261 -21.22276 -20.02399 -19.74962 -18.82413 -18.23147 -17.99419 -17.39981 -17.01526 -16.86420 -16.41287 -16.32492 -15.75894 -15.36524 -15.10694 -14.63213 -14.53741 -14.31639 -13.93002 -13.76724 -13.58690 -13.34963 -13.18410 -12.99995 -12.97498 -12.80526 -12.56465 -12.44525 -12.18255 -11.98517 -11.93884 -11.86746 -11.70452 -11.53835 -10.88043 -10.80869 -10.58810 -10.04768 -9.45633 -8.94730 -7.95444 -5.28314 1.45602 1.46835 1.56073 1.63067 1.74873 2.07509 2.37985 2.48669 3.24178 3.41165 3.58776 3.62928 3.75896 3.86662 3.87648 4.04621 4.30683 4.41531 4.43389 4.44149 4.54437 4.61172 4.69492 4.72590 4.78867 4.84577 4.86018 4.92529 4.98268 5.03615 5.09123 5.20215 5.22155 5.29232 5.42956 5.46988 5.74549 5.78165 5.88912 6.38078 6.60664 6.88279 7.19782 7.31364 7.56273 8.50778 9.22210 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.040369 B = 0.002754 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.433321 B =10164.320631 C =10423.920473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.602 5.602 3 C 0.502 3.498 4 O -0.587 6.587 5 C -0.120 4.120 6 C -0.086 4.086 7 H 0.071 0.929 8 C -0.108 4.108 9 C -0.131 4.131 10 C 0.509 3.491 11 O -0.619 6.619 12 N -0.713 5.713 13 C 0.106 3.894 14 C 0.117 3.883 15 C 0.164 3.836 16 N -0.639 5.639 17 C -0.237 4.237 18 H 0.084 0.916 19 C -0.063 4.063 20 N -0.950 5.950 21 Si 0.979 3.021 22 H -0.284 1.284 23 H -0.295 1.295 24 H -0.268 1.268 25 C 0.114 3.886 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.397 0.603 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.031 0.969 41 H 0.250 0.750 42 H 0.047 0.953 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 19.664 4.771 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.334 5.334 3 C 0.293 3.707 4 O -0.468 6.468 5 C -0.159 4.159 6 C -0.106 4.106 7 H 0.090 0.910 8 C -0.145 4.145 9 C -0.171 4.171 10 C 0.298 3.702 11 O -0.502 6.502 12 N -0.361 5.361 13 C -0.018 4.018 14 C 0.011 3.989 15 C 0.038 3.962 16 N -0.366 5.366 17 C -0.365 4.365 18 H 0.102 0.898 19 C -0.257 4.257 20 N -0.599 5.599 21 Si 0.807 3.193 22 H -0.211 1.211 23 H -0.222 1.222 24 H -0.193 1.193 25 C -0.012 4.012 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.231 0.769 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.504 19.803 4.730 21.373 hybrid contribution 0.772 -1.663 -0.646 1.944 sum -5.732 18.140 4.083 19.457 Atomic orbital electron populations 1.22064 0.77312 1.04632 1.03088 1.48054 1.08346 1.04898 1.72078 1.21602 0.87917 0.86517 0.74711 1.90660 1.16222 1.87953 1.51964 1.21793 0.98499 0.87780 1.07871 1.21197 0.96969 0.95182 0.97219 0.91026 1.21740 0.96987 0.90408 1.05401 1.21684 0.94880 1.02745 0.97757 1.20984 0.85544 0.81409 0.82262 1.90723 1.51976 1.38029 1.69499 1.45586 1.34445 1.13376 1.42726 1.21721 0.95681 0.85483 0.98877 1.23188 0.96811 0.81758 0.97150 1.22467 0.96808 0.84769 0.92168 1.46035 1.82492 1.02469 1.05641 1.19369 1.38358 0.81599 0.97190 0.89820 1.25655 1.02090 1.02526 0.95413 1.70001 1.55047 1.35073 0.99735 0.85057 0.77683 0.79657 0.76927 1.21088 1.22155 1.19311 1.23078 0.99120 0.85684 0.93316 0.91662 0.91920 0.86694 0.85641 0.84648 0.89558 0.87093 0.86899 0.87397 0.76907 0.90953 0.90206 0.89159 0.94268 0.95033 0.94100 0.93498 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 8.84 127.77 1.13 2.39 16 2 N -0.60 -15.74 3.09 -828.36 -2.56 -18.30 16 3 C 0.50 11.95 7.43 87.66 0.65 12.60 16 4 O -0.59 -19.24 13.54 -3.03 -0.04 -19.28 16 5 C -0.12 -1.33 3.73 29.85 0.11 -1.22 16 6 C -0.09 -1.13 1.89 -10.71 -0.02 -1.15 16 7 H 0.07 1.25 7.93 -2.38 -0.02 1.23 16 8 C -0.11 -0.79 5.33 30.73 0.16 -0.63 16 9 C -0.13 -1.66 6.03 29.71 0.18 -1.48 16 10 C 0.51 11.17 7.71 87.71 0.68 11.85 16 11 O -0.62 -19.39 17.78 -3.03 -0.05 -19.45 16 12 N -0.71 -14.04 5.45 -467.31 -2.55 -16.59 16 13 C 0.11 1.82 6.12 86.49 0.53 2.35 16 14 C 0.12 4.34 4.40 46.75 0.21 4.54 16 15 C 0.16 7.50 6.88 86.44 0.59 8.09 16 16 N -0.64 -32.30 3.70 -716.77 -2.65 -34.95 16 17 C -0.24 -13.20 10.70 84.03 0.90 -12.30 16 18 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 19 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 20 N -0.95 -56.48 11.51 21.65 0.25 -56.23 16 21 Si 0.98 45.14 29.56 68.60 2.03 47.16 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 C 0.11 4.46 8.46 86.48 0.73 5.19 16 26 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.06 1.35 6.35 -2.39 -0.02 1.34 16 28 H 0.11 0.94 6.43 -2.38 -0.02 0.93 16 29 H 0.13 0.80 8.08 -2.39 -0.02 0.78 16 30 H 0.14 0.66 7.39 -2.39 -0.02 0.64 16 31 H 0.09 0.48 8.13 -2.39 -0.02 0.46 16 32 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.40 7.88 8.80 -92.71 -0.82 7.06 16 36 H 0.07 1.69 6.23 -2.39 -0.01 1.67 16 37 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 38 H 0.09 3.83 7.22 -2.39 -0.02 3.81 16 39 H 0.04 1.73 6.83 -2.39 -0.02 1.72 16 40 H 0.03 1.67 7.37 -2.39 -0.02 1.66 16 41 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 2.09 6.84 -2.39 -0.02 2.07 16 Total: -1.00 -79.58 341.49 0.95 -78.64 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.21 Total: 11.87 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: 6.32 Total: 27.13 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -7.51 Total: -126.07 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.09 Total: -38.73 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -79.58 0.95 -78.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042897249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.485 kcal (2) G-P(sol) polarization free energy of solvation -79.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds