Wall clock time and date at job start Tue Mar 31 2020 03:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34773 * 120.00370 * 2 1 4 4 O 1.21277 * 120.00304 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99802 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47451 * 180.02562 * 5 3 2 7 7 H 1.09001 * 109.60002 * 55.32102 * 6 5 3 8 8 C 1.53306 * 109.74876 * 175.83566 * 6 5 3 9 9 C 1.53068 * 108.45714 * 187.43873 * 8 6 5 10 10 C 1.50175 * 109.81907 * 310.98922 * 9 8 6 11 11 O 1.21279 * 118.24601 * 197.62393 * 10 9 8 12 12 N 1.33355 * 123.50957 * 17.60622 * 10 9 8 13 13 C 1.45747 * 124.10720 * 357.77554 * 12 10 9 14 14 C 1.46507 * 119.99951 * 179.97438 * 2 1 3 15 15 C 1.53947 * 113.73868 * 36.67150 * 14 2 1 16 16 N 1.47576 * 86.11557 * 222.04517 * 15 14 2 17 17 C 1.36938 * 134.49187 * 204.63881 * 16 15 14 18 18 H 1.08000 * 120.00104 * 180.02562 * 17 16 15 19 19 C 1.38812 * 120.00116 * 0.02562 * 17 16 15 20 20 N 1.31612 * 120.00067 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99840 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47180 * 60.00026 * 21 19 17 23 23 H 1.48499 * 109.47116 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47228 * 299.99664 * 21 19 17 25 25 C 1.47577 * 91.01419 * 24.64328 * 16 15 14 26 26 H 1.08994 * 109.46947 * 90.00232 * 1 2 3 27 27 H 1.08999 * 109.47295 * 210.00206 * 1 2 3 28 28 H 1.08998 * 109.46651 * 330.00189 * 1 2 3 29 29 H 1.08998 * 109.46972 * 60.00436 * 5 3 2 30 30 H 1.09000 * 109.47352 * 300.00483 * 5 3 2 31 31 H 1.09001 * 109.71257 * 67.65704 * 8 6 5 32 32 H 1.09006 * 109.60363 * 307.14753 * 8 6 5 33 33 H 1.09002 * 109.40169 * 190.90432 * 9 8 6 34 34 H 1.09003 * 109.40095 * 71.07949 * 9 8 6 35 35 H 0.97002 * 117.94587 * 177.79323 * 12 10 9 36 36 H 1.08998 * 109.30193 * 139.40921 * 13 12 10 37 37 H 1.08997 * 109.30045 * 258.78542 * 13 12 10 38 38 H 1.09000 * 112.94262 * 168.40376 * 14 2 1 39 39 H 1.08993 * 113.77318 * 336.35333 * 15 14 2 40 40 H 1.09003 * 113.76639 * 107.74843 * 15 14 2 41 41 H 0.97001 * 120.00162 * 179.97438 * 20 19 17 42 42 H 1.08995 * 113.77075 * 221.05252 * 25 16 15 43 43 H 1.09011 * 113.87176 * 89.67172 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4722 -0.0006 6 6 2.3797 3.6352 -0.0011 7 1 3.0614 3.5331 -0.8455 8 6 1.6225 4.9640 -0.1065 9 6 2.6428 6.0898 -0.2923 10 6 3.7324 5.9639 0.7335 11 8 4.4348 6.9294 0.9463 12 7 3.9686 4.8473 1.4233 13 6 3.1760 3.6301 1.3045 14 6 2.1975 -1.2688 0.0006 15 6 1.5285 -2.3710 -0.8406 16 7 1.8682 -3.2837 0.2683 17 6 2.0737 -4.6336 0.3714 18 1 2.3181 -5.0711 1.3281 19 6 1.9678 -5.4398 -0.7536 20 7 1.6693 -4.9068 -1.9194 21 14 2.2474 -7.2814 -0.6127 22 1 1.2637 -7.8602 0.3373 23 1 2.0778 -7.9113 -1.9467 24 1 3.6237 -7.5366 -0.1168 25 6 1.8973 -2.1573 1.2213 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3632 0.8900 0.5138 29 1 0.7586 2.5302 0.8892 30 1 0.7591 2.5298 -0.8908 31 1 1.0500 5.1343 0.8053 32 1 0.9489 4.9342 -0.9630 33 1 2.1451 7.0525 -0.1755 34 1 3.0759 6.0249 -1.2904 35 1 4.7147 4.8453 2.0432 36 1 3.8393 2.7653 1.3185 37 1 2.4868 3.5653 2.1464 38 1 3.2615 -1.1452 -0.2013 39 1 0.4570 -2.2282 -0.9796 40 1 2.0533 -2.5941 -1.7696 41 1 1.5957 -5.4701 -2.7056 42 1 2.7162 -2.2097 1.9386 43 1 0.9347 -1.9503 1.6892 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042897251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:13 Heat of formation + Delta-G solvation = -20.101169 kcal Electronic energy + Delta-G solvation = -24009.292515 eV Core-core repulsion = 20477.101602 eV Total energy + Delta-G solvation = -3532.190913 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67938 -39.78596 -37.95934 -36.64747 -34.56056 -33.58668 -32.12274 -31.45154 -28.06126 -27.04597 -26.48744 -24.87889 -24.73970 -23.25598 -22.07810 -19.86751 -19.28218 -18.52356 -17.38665 -17.08329 -16.79601 -16.26813 -16.08364 -15.59416 -15.38396 -14.90745 -14.48634 -14.27161 -13.90275 -13.78246 -13.48223 -13.23559 -13.05547 -12.54824 -12.39056 -12.16732 -11.88887 -11.79833 -11.61858 -11.42029 -11.35877 -11.24120 -11.11902 -10.92558 -10.75714 -10.31156 -10.14312 -9.93390 -9.62354 -9.53084 -9.17529 -8.86288 -8.22382 -6.97844 -5.84643 -3.17789 2.48183 2.74866 3.13461 3.17977 3.36295 3.40414 3.41352 4.24728 4.33347 4.37129 4.42440 4.48994 4.74423 5.00388 5.06385 5.13012 5.15622 5.21346 5.32113 5.36672 5.38778 5.44307 5.47136 5.49186 5.54528 5.68805 5.79874 5.84921 5.99886 6.02417 6.10421 6.36346 6.50691 6.59325 6.70097 7.12209 7.17589 7.26289 7.45355 7.68420 7.89621 8.04304 8.35016 8.96590 9.62633 10.48968 11.32438 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.041728 B = 0.002745 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.857300 B =10198.376805 C =10451.183092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.599 5.599 3 C 0.507 3.493 4 O -0.546 6.546 5 C -0.133 4.133 6 C -0.089 4.089 7 H 0.090 0.910 8 C -0.120 4.120 9 C -0.134 4.134 10 C 0.517 3.483 11 O -0.568 6.568 12 N -0.715 5.715 13 C 0.106 3.894 14 C 0.090 3.910 15 C 0.157 3.843 16 N -0.606 5.606 17 C -0.225 4.225 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.915 3.085 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.108 3.892 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.399 0.601 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.115 0.885 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.255 0.745 42 H 0.046 0.954 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 18.376 3.624 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.331 5.331 3 C 0.295 3.705 4 O -0.424 6.424 5 C -0.173 4.173 6 C -0.108 4.108 7 H 0.109 0.891 8 C -0.158 4.158 9 C -0.174 4.174 10 C 0.305 3.695 11 O -0.448 6.448 12 N -0.366 5.366 13 C -0.017 4.017 14 C -0.014 4.014 15 C 0.031 3.969 16 N -0.332 5.332 17 C -0.353 4.353 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.745 3.255 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.019 4.019 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.234 0.766 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.133 0.867 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.220 18.495 3.441 19.280 hybrid contribution 0.034 -1.306 0.276 1.335 sum -4.186 17.190 3.717 18.078 Atomic orbital electron populations 1.21803 0.79890 1.02996 1.02037 1.48077 1.06935 1.06354 1.71707 1.20598 0.88123 0.85403 0.76364 1.90653 1.13953 1.87332 1.50471 1.21723 0.98873 0.91925 1.04825 1.21211 0.96982 0.93527 0.99060 0.89118 1.21752 0.97610 0.93098 1.03328 1.21625 0.95493 1.01145 0.99127 1.20215 0.85320 0.82099 0.81913 1.90750 1.49863 1.36796 1.67342 1.45486 1.34162 1.12973 1.43963 1.21687 0.95806 0.87219 0.97037 1.24046 0.98052 0.79923 0.99360 1.22620 0.96540 0.83658 0.94104 1.45646 1.81096 1.02098 1.04378 1.18944 1.41244 0.80185 0.94879 0.90094 1.24803 1.01730 0.98314 0.95423 1.69795 1.53848 1.34390 0.98712 0.86162 0.78130 0.84519 0.76721 1.21117 1.21489 1.20963 1.22965 0.98044 0.87302 0.93591 0.92372 0.90326 0.91567 0.88623 0.88205 0.90953 0.90151 0.88150 0.88114 0.76590 0.88123 0.92078 0.86673 0.95078 0.90556 0.93457 0.93563 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 8.84 59.85 0.53 1.35 16 2 N -0.60 -8.46 3.09 -175.75 -0.54 -9.00 16 3 C 0.51 6.62 7.43 -10.99 -0.08 6.54 16 4 O -0.55 -9.01 13.50 5.56 0.08 -8.93 16 5 C -0.13 -1.06 3.74 -27.88 -0.10 -1.16 16 6 C -0.09 -0.73 1.90 -90.50 -0.17 -0.90 16 7 H 0.09 0.90 7.95 -51.93 -0.41 0.49 16 8 C -0.12 -0.73 5.32 -26.54 -0.14 -0.87 16 9 C -0.13 -1.04 6.04 -28.10 -0.17 -1.21 16 10 C 0.52 5.85 7.71 -11.87 -0.09 5.76 16 11 O -0.57 -8.76 17.78 5.56 0.10 -8.66 16 12 N -0.72 -7.09 5.45 -61.39 -0.33 -7.42 16 13 C 0.11 0.97 6.10 -4.49 -0.03 0.94 16 14 C 0.09 1.67 4.40 -70.15 -0.31 1.36 16 15 C 0.16 3.52 6.93 -2.98 -0.02 3.50 16 16 N -0.61 -15.10 3.70 -178.11 -0.66 -15.76 16 17 C -0.23 -6.19 10.70 -15.06 -0.16 -6.35 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -26.69 11.38 55.49 0.63 -26.06 16 21 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.11 2.14 8.46 -2.98 -0.03 2.12 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.96 6.36 -51.93 -0.33 0.63 16 28 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 29 H 0.10 0.57 7.38 -51.93 -0.38 0.19 16 30 H 0.10 0.63 8.11 -51.93 -0.42 0.21 16 31 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.40 3.75 8.80 -40.82 -0.36 3.39 16 36 H 0.10 1.14 6.16 -51.93 -0.32 0.82 16 37 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 38 H 0.12 2.37 7.24 -51.93 -0.38 1.99 16 39 H 0.03 0.68 6.71 -51.93 -0.35 0.33 16 40 H 0.08 1.95 7.15 -51.93 -0.37 1.58 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.63 6.98 -51.92 -0.36 0.27 16 LS Contribution 341.20 15.07 5.14 5.14 Total: -1.00 -34.36 341.20 -8.00 -42.37 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.52 Total: 0.80 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -0.87 Total: 10.81 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.90 Total: -58.24 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.17 Total: -17.59 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.36 -8.00 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042897251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.266 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds