Wall clock time and date at job start Tue Mar 31 2020 03:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34773 * 120.00370 * 2 1 4 4 O 1.21277 * 120.00304 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99802 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47451 * 180.02562 * 5 3 2 7 7 H 1.09001 * 109.60002 * 55.32102 * 6 5 3 8 8 C 1.53306 * 109.74876 * 175.83566 * 6 5 3 9 9 C 1.53068 * 108.45714 * 187.43873 * 8 6 5 10 10 C 1.50175 * 109.81907 * 310.98922 * 9 8 6 11 11 O 1.21279 * 118.24601 * 197.62393 * 10 9 8 12 12 N 1.33355 * 123.50957 * 17.60622 * 10 9 8 13 13 C 1.45747 * 124.10720 * 357.77554 * 12 10 9 14 14 C 1.46507 * 119.99951 * 179.97438 * 2 1 3 15 15 C 1.53947 * 113.73868 * 36.67150 * 14 2 1 16 16 N 1.47576 * 86.11557 * 222.04517 * 15 14 2 17 17 C 1.36938 * 134.49187 * 204.63881 * 16 15 14 18 18 H 1.08000 * 120.00104 * 180.02562 * 17 16 15 19 19 C 1.38812 * 120.00116 * 0.02562 * 17 16 15 20 20 N 1.31612 * 120.00067 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99840 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47180 * 60.00026 * 21 19 17 23 23 H 1.48499 * 109.47116 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47228 * 299.99664 * 21 19 17 25 25 C 1.47577 * 91.01419 * 24.64328 * 16 15 14 26 26 H 1.08994 * 109.46947 * 90.00232 * 1 2 3 27 27 H 1.08999 * 109.47295 * 210.00206 * 1 2 3 28 28 H 1.08998 * 109.46651 * 330.00189 * 1 2 3 29 29 H 1.08998 * 109.46972 * 60.00436 * 5 3 2 30 30 H 1.09000 * 109.47352 * 300.00483 * 5 3 2 31 31 H 1.09001 * 109.71257 * 67.65704 * 8 6 5 32 32 H 1.09006 * 109.60363 * 307.14753 * 8 6 5 33 33 H 1.09002 * 109.40169 * 190.90432 * 9 8 6 34 34 H 1.09003 * 109.40095 * 71.07949 * 9 8 6 35 35 H 0.97002 * 117.94587 * 177.79323 * 12 10 9 36 36 H 1.08998 * 109.30193 * 139.40921 * 13 12 10 37 37 H 1.08997 * 109.30045 * 258.78542 * 13 12 10 38 38 H 1.09000 * 112.94262 * 168.40376 * 14 2 1 39 39 H 1.08993 * 113.77318 * 336.35333 * 15 14 2 40 40 H 1.09003 * 113.76639 * 107.74843 * 15 14 2 41 41 H 0.97001 * 120.00162 * 179.97438 * 20 19 17 42 42 H 1.08995 * 113.77075 * 221.05252 * 25 16 15 43 43 H 1.09011 * 113.87176 * 89.67172 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4722 -0.0006 6 6 2.3797 3.6352 -0.0011 7 1 3.0614 3.5331 -0.8455 8 6 1.6225 4.9640 -0.1065 9 6 2.6428 6.0898 -0.2923 10 6 3.7324 5.9639 0.7335 11 8 4.4348 6.9294 0.9463 12 7 3.9686 4.8473 1.4233 13 6 3.1760 3.6301 1.3045 14 6 2.1975 -1.2688 0.0006 15 6 1.5285 -2.3710 -0.8406 16 7 1.8682 -3.2837 0.2683 17 6 2.0737 -4.6336 0.3714 18 1 2.3181 -5.0711 1.3281 19 6 1.9678 -5.4398 -0.7536 20 7 1.6693 -4.9068 -1.9194 21 14 2.2474 -7.2814 -0.6127 22 1 1.2637 -7.8602 0.3373 23 1 2.0778 -7.9113 -1.9467 24 1 3.6237 -7.5366 -0.1168 25 6 1.8973 -2.1573 1.2213 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3632 0.8900 0.5138 29 1 0.7586 2.5302 0.8892 30 1 0.7591 2.5298 -0.8908 31 1 1.0500 5.1343 0.8053 32 1 0.9489 4.9342 -0.9630 33 1 2.1451 7.0525 -0.1755 34 1 3.0759 6.0249 -1.2904 35 1 4.7147 4.8453 2.0432 36 1 3.8393 2.7653 1.3185 37 1 2.4868 3.5653 2.1464 38 1 3.2615 -1.1452 -0.2013 39 1 0.4570 -2.2282 -0.9796 40 1 2.0533 -2.5941 -1.7696 41 1 1.5957 -5.4701 -2.7056 42 1 2.7162 -2.2097 1.9386 43 1 0.9347 -1.9503 1.6892 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042897251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:12 Heat of formation + Delta-G solvation = -45.560967 kcal Electronic energy + Delta-G solvation = -24010.396535 eV Core-core repulsion = 20477.101602 eV Total energy + Delta-G solvation = -3533.294933 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57167 -40.90362 -39.37541 -37.58269 -35.84687 -34.38318 -33.96233 -32.23906 -29.72996 -27.93256 -27.66174 -26.59163 -25.49241 -24.72874 -23.00285 -21.22248 -20.02519 -19.75031 -18.83556 -18.23240 -17.98583 -17.34526 -17.12353 -16.75004 -16.42947 -16.36954 -15.72024 -15.44269 -15.04437 -14.63057 -14.55572 -14.32050 -13.87185 -13.81228 -13.57496 -13.34807 -13.14843 -13.02903 -12.95311 -12.79669 -12.57312 -12.43695 -12.16752 -12.05094 -11.96425 -11.84632 -11.69598 -11.52604 -10.87152 -10.80872 -10.58492 -10.03420 -9.45666 -8.95785 -7.93628 -5.27528 1.45373 1.48757 1.54819 1.63170 1.74748 2.07567 2.38640 2.48946 3.26580 3.40810 3.58923 3.61812 3.77590 3.85580 3.88205 4.05130 4.30703 4.38941 4.43319 4.45995 4.54133 4.61887 4.67830 4.74328 4.80134 4.84361 4.88155 4.89900 4.98418 5.03172 5.08873 5.20475 5.23555 5.29502 5.42554 5.47208 5.75035 5.79273 5.90166 6.38243 6.60668 6.88889 7.20241 7.31423 7.57064 8.50809 9.23092 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.041728 B = 0.002745 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.857300 B =10198.376805 C =10451.183092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.602 5.602 3 C 0.502 3.498 4 O -0.587 6.587 5 C -0.119 4.119 6 C -0.087 4.087 7 H 0.068 0.932 8 C -0.108 4.108 9 C -0.132 4.132 10 C 0.509 3.491 11 O -0.619 6.619 12 N -0.712 5.712 13 C 0.106 3.894 14 C 0.117 3.883 15 C 0.160 3.840 16 N -0.639 5.639 17 C -0.237 4.237 18 H 0.085 0.915 19 C -0.065 4.065 20 N -0.952 5.952 21 Si 0.981 3.019 22 H -0.274 1.274 23 H -0.293 1.293 24 H -0.278 1.278 25 C 0.115 3.885 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.397 0.603 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.250 0.750 42 H 0.047 0.953 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.478 19.615 4.443 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.334 5.334 3 C 0.292 3.708 4 O -0.468 6.468 5 C -0.159 4.159 6 C -0.107 4.107 7 H 0.086 0.914 8 C -0.145 4.145 9 C -0.171 4.171 10 C 0.298 3.702 11 O -0.502 6.502 12 N -0.361 5.361 13 C -0.017 4.017 14 C 0.011 3.989 15 C 0.034 3.966 16 N -0.366 5.366 17 C -0.366 4.366 18 H 0.102 0.898 19 C -0.258 4.258 20 N -0.601 5.601 21 Si 0.808 3.192 22 H -0.200 1.200 23 H -0.219 1.219 24 H -0.204 1.204 25 C -0.011 4.011 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.232 0.768 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.699 19.750 4.291 21.292 hybrid contribution 0.845 -1.645 0.067 1.851 sum -5.854 18.104 4.358 19.520 Atomic orbital electron populations 1.22061 0.77301 1.04631 1.03085 1.48057 1.08350 1.04889 1.72076 1.21600 0.87915 0.86515 0.74729 1.90657 1.16231 1.87945 1.51951 1.21780 0.98486 0.87762 1.07865 1.21193 0.96927 0.95171 0.97387 0.91398 1.21726 0.97002 0.90382 1.05416 1.21686 0.94827 1.02735 0.97878 1.20956 0.85651 0.81460 0.82121 1.90723 1.51951 1.38522 1.69029 1.45578 1.34053 1.13089 1.43379 1.21735 0.95647 0.85583 0.98749 1.23167 0.96723 0.81770 0.97197 1.22489 0.96626 0.84966 0.92486 1.45985 1.81489 1.02333 1.06760 1.19339 1.40297 0.81864 0.95057 0.89768 1.25641 1.02333 1.02613 0.95208 1.69985 1.55443 1.35490 0.99144 0.85128 0.78222 0.79391 0.76439 1.20018 1.21947 1.20446 1.23074 0.99145 0.85483 0.93435 0.91678 0.91903 0.86688 0.85073 0.85226 0.89292 0.87376 0.86873 0.87601 0.76848 0.90771 0.89885 0.89300 0.94285 0.94677 0.94126 0.93500 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 8.84 127.77 1.13 2.39 16 2 N -0.60 -15.77 3.09 -828.35 -2.56 -18.33 16 3 C 0.50 11.97 7.43 87.66 0.65 12.63 16 4 O -0.59 -19.28 13.50 -3.02 -0.04 -19.32 16 5 C -0.12 -1.33 3.74 29.85 0.11 -1.22 16 6 C -0.09 -1.15 1.90 -10.72 -0.02 -1.17 16 7 H 0.07 1.24 7.95 -2.39 -0.02 1.22 16 8 C -0.11 -0.81 5.32 30.72 0.16 -0.65 16 9 C -0.13 -1.70 6.04 29.71 0.18 -1.52 16 10 C 0.51 11.10 7.71 87.71 0.68 11.77 16 11 O -0.62 -19.30 17.78 -3.03 -0.05 -19.35 16 12 N -0.71 -13.63 5.45 -467.34 -2.55 -16.18 16 13 C 0.11 1.74 6.10 86.50 0.53 2.27 16 14 C 0.12 4.37 4.40 46.75 0.21 4.58 16 15 C 0.16 7.36 6.93 86.48 0.60 7.95 16 16 N -0.64 -32.29 3.70 -717.43 -2.65 -34.94 16 17 C -0.24 -13.22 10.70 84.03 0.90 -12.32 16 18 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 19 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 20 N -0.95 -56.76 11.38 21.65 0.25 -56.51 16 21 Si 0.98 45.23 29.55 68.60 2.03 47.25 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 C 0.11 4.47 8.46 86.48 0.73 5.20 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.35 6.36 -2.39 -0.02 1.33 16 28 H 0.11 0.93 6.44 -2.39 -0.02 0.92 16 29 H 0.13 0.65 7.38 -2.39 -0.02 0.63 16 30 H 0.13 0.82 8.11 -2.39 -0.02 0.80 16 31 H 0.09 0.46 8.13 -2.39 -0.02 0.44 16 32 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 33 H 0.11 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.40 7.59 8.80 -92.71 -0.82 6.77 16 36 H 0.07 1.66 6.16 -2.39 -0.01 1.64 16 37 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 38 H 0.09 3.81 7.24 -2.39 -0.02 3.79 16 39 H 0.04 1.72 6.71 -2.39 -0.02 1.70 16 40 H 0.03 1.88 7.15 -2.39 -0.02 1.86 16 41 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 2.08 6.98 -2.38 -0.02 2.07 16 Total: -1.00 -79.70 341.20 0.95 -78.75 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.21 Total: 11.91 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 6.32 Total: 26.72 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -7.51 Total: -125.96 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.09 Total: -38.67 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -79.70 0.95 -78.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042897251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.186 kcal (2) G-P(sol) polarization free energy of solvation -79.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds