Wall clock time and date at job start Tue Mar 31 2020 03:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99913 * 2 1 4 4 O 1.21277 * 119.99504 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.00178 * 359.97438 * 3 2 1 6 6 C 1.53003 * 109.47089 * 185.67713 * 5 3 2 7 7 H 1.08999 * 110.21866 * 307.40010 * 6 5 3 8 8 C 1.54482 * 110.24245 * 69.32988 * 6 5 3 9 9 C 1.54859 * 101.65891 * 144.48096 * 8 6 5 10 10 C 1.51282 * 104.20815 * 335.18265 * 9 8 6 11 11 O 1.21280 * 124.94041 * 196.28422 * 10 9 8 12 12 N 1.34421 * 110.11527 * 16.27402 * 10 9 8 13 13 C 1.46500 * 124.34808 * 180.42604 * 12 10 9 14 14 C 1.46502 * 119.99647 * 179.97438 * 2 1 3 15 15 C 1.53948 * 113.73865 * 36.68138 * 14 2 1 16 16 N 1.47581 * 86.11482 * 222.03981 * 15 14 2 17 17 C 1.36935 * 134.49794 * 204.63956 * 16 15 14 18 18 H 1.07998 * 120.00344 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99488 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00260 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47135 * 90.00069 * 21 19 17 23 23 H 1.48498 * 109.46682 * 210.00018 * 21 19 17 24 24 H 1.48499 * 109.46925 * 329.99862 * 21 19 17 25 25 C 1.47589 * 91.01295 * 24.64215 * 16 15 14 26 26 H 1.08997 * 109.47309 * 90.00477 * 1 2 3 27 27 H 1.09003 * 109.47292 * 210.00385 * 1 2 3 28 28 H 1.09009 * 109.47302 * 330.00409 * 1 2 3 29 29 H 1.09000 * 109.47272 * 65.67727 * 5 3 2 30 30 H 1.09001 * 109.47318 * 305.67840 * 5 3 2 31 31 H 1.09007 * 110.96692 * 262.62089 * 8 6 5 32 32 H 1.09000 * 110.97398 * 26.38206 * 8 6 5 33 33 H 1.09004 * 110.46255 * 216.51121 * 9 8 6 34 34 H 1.08994 * 110.49185 * 93.87792 * 9 8 6 35 35 H 1.08999 * 109.47039 * 274.85657 * 13 12 10 36 36 H 1.08996 * 109.47127 * 34.85982 * 13 12 10 37 37 H 1.08999 * 109.46718 * 154.86292 * 13 12 10 38 38 H 1.09005 * 112.93888 * 168.40693 * 14 2 1 39 39 H 1.08992 * 113.77277 * 336.34114 * 15 14 2 40 40 H 1.09004 * 113.76912 * 107.74262 * 15 14 2 41 41 H 0.97001 * 120.00107 * 180.02562 * 20 19 17 42 42 H 1.09001 * 113.76487 * 221.05838 * 25 16 15 43 43 H 1.08998 * 113.77208 * 89.65701 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1671 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3736 3.6316 -0.1432 7 1 3.1575 3.5532 0.6101 8 6 2.9913 3.6364 -1.5591 9 6 3.1322 5.1538 -1.8340 10 6 2.0834 5.7905 -0.9490 11 8 1.6726 6.9256 -1.0651 12 7 1.6729 4.9148 -0.0154 13 6 0.6562 5.2041 0.9990 14 6 2.1974 -1.2688 0.0006 15 6 1.5285 -2.3709 -0.8408 16 7 1.8680 -3.2838 0.2680 17 6 2.0736 -4.6337 0.3712 18 1 2.3180 -5.0712 1.3279 19 6 1.9678 -5.4397 -0.7540 20 7 1.6694 -4.9066 -1.9198 21 14 2.2474 -7.2814 -0.6132 22 1 0.9589 -7.9563 -0.3139 23 1 2.7913 -7.7987 -1.8945 24 1 3.2143 -7.5529 0.4807 25 6 1.8971 -2.1573 1.2212 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8901 0.5138 29 1 0.8368 2.5755 0.9356 30 1 0.6850 2.4871 -0.8356 31 1 3.9649 3.1461 -1.5615 32 1 2.3195 3.1696 -2.2794 33 1 2.9297 5.3715 -2.8827 34 1 4.1274 5.5010 -1.5566 35 1 1.1245 5.6917 1.8540 36 1 -0.1023 5.8625 0.5758 37 1 0.1902 4.2732 1.3221 38 1 3.2615 -1.1452 -0.2012 39 1 0.4569 -2.2281 -0.9798 40 1 2.0533 -2.5939 -1.7698 41 1 1.5951 -5.4700 -2.7059 42 1 2.7161 -2.2099 1.9385 43 1 0.9337 -1.9517 1.6879 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043510002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:48 Heat of formation + Delta-G solvation = -2.020642 kcal Electronic energy + Delta-G solvation = -24133.315994 eV Core-core repulsion = 20601.909111 eV Total energy + Delta-G solvation = -3531.406883 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.88409 -39.74791 -37.85004 -36.64877 -34.57118 -32.98411 -32.15219 -31.11464 -27.81122 -26.87433 -26.76404 -25.51768 -24.87946 -23.17074 -21.81662 -19.84820 -19.50500 -18.53509 -17.53961 -16.97178 -16.64053 -16.47801 -15.83084 -15.49527 -15.34128 -14.85400 -14.13579 -14.07011 -13.89984 -13.87144 -13.39481 -13.03767 -12.91861 -12.56158 -12.54294 -12.44407 -12.24726 -12.02194 -11.83367 -11.58544 -11.36960 -11.22240 -11.19076 -10.94695 -10.75408 -10.31411 -10.12719 -10.01080 -9.64232 -9.59477 -8.96904 -8.86905 -8.24461 -6.98126 -5.85010 -3.18102 2.37792 2.67350 2.72698 3.22808 3.35602 3.40646 3.42307 4.10105 4.22283 4.39749 4.44250 4.62502 4.74189 4.91268 5.02790 5.06936 5.12613 5.15888 5.18339 5.29625 5.37703 5.43753 5.48680 5.52385 5.52748 5.67962 5.78823 5.82298 5.91010 6.00784 6.08319 6.24818 6.35860 6.50350 6.68384 6.85209 7.11818 7.25041 7.44958 7.65564 7.89245 7.95405 8.31288 8.96330 9.62318 10.48502 11.32094 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.040559 B = 0.002858 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.190670 B = 9793.927854 C =10025.088848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.598 5.598 3 C 0.515 3.485 4 O -0.543 6.543 5 C -0.151 4.151 6 C 0.146 3.854 7 H 0.094 0.906 8 C -0.123 4.123 9 C -0.156 4.156 10 C 0.518 3.482 11 O -0.539 6.539 12 N -0.620 5.620 13 C 0.092 3.908 14 C 0.091 3.909 15 C 0.157 3.843 16 N -0.606 5.606 17 C -0.224 4.224 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.108 3.892 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.031 0.969 40 H 0.077 0.923 41 H 0.255 0.745 42 H 0.047 0.953 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 17.629 3.154 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.330 5.330 3 C 0.302 3.698 4 O -0.421 6.421 5 C -0.192 4.192 6 C 0.043 3.957 7 H 0.112 0.888 8 C -0.160 4.160 9 C -0.196 4.196 10 C 0.306 3.694 11 O -0.416 6.416 12 N -0.354 5.354 13 C -0.050 4.050 14 C -0.013 4.013 15 C 0.031 3.969 16 N -0.332 5.332 17 C -0.352 4.352 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.205 1.205 25 C -0.020 4.020 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.134 0.866 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.225 17.886 3.034 18.277 hybrid contribution -0.296 -1.218 0.177 1.266 sum -2.521 16.668 3.211 17.161 Atomic orbital electron populations 1.21800 0.79893 1.02950 1.02059 1.48051 1.06930 1.06287 1.71762 1.20258 0.87972 0.85020 0.76555 1.90687 1.13734 1.87369 1.50301 1.22032 0.99529 0.92727 1.04871 1.21465 0.93520 0.81273 0.99482 0.88783 1.22724 1.03632 0.94862 0.94820 1.22418 0.99643 0.96338 1.01208 1.20951 0.82485 0.84929 0.81058 1.90713 1.60467 1.18029 1.72373 1.48286 1.40660 1.14382 1.32118 1.21585 0.90854 1.01768 0.90810 1.24062 0.98067 0.79768 0.99394 1.22625 0.96552 0.83630 0.94118 1.45658 1.81088 1.02103 1.04372 1.18992 1.41131 0.80159 0.94893 0.90035 1.24805 1.01755 0.98306 0.95420 1.69806 1.53932 1.34247 0.98712 0.86087 0.77806 0.84655 0.77014 1.21557 1.21536 1.20525 1.22976 0.98068 0.87296 0.93613 0.92326 0.90224 0.91755 0.88388 0.88379 0.88002 0.90036 0.88010 0.87726 0.92503 0.90863 0.90659 0.86574 0.95088 0.90494 0.93512 0.93490 0.94782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 8.74 59.85 0.52 1.37 16 2 N -0.60 -8.53 3.09 -175.75 -0.54 -9.07 16 3 C 0.52 6.84 7.42 -10.99 -0.08 6.76 16 4 O -0.54 -8.94 14.61 5.56 0.08 -8.86 16 5 C -0.15 -1.35 3.46 -27.88 -0.10 -1.45 16 6 C 0.15 1.36 2.93 -67.01 -0.20 1.17 16 7 H 0.09 0.96 7.81 -51.93 -0.41 0.55 16 8 C -0.12 -1.10 5.93 -24.97 -0.15 -1.24 16 9 C -0.16 -1.35 6.87 -26.62 -0.18 -1.53 16 10 C 0.52 5.98 8.02 -10.86 -0.09 5.89 16 11 O -0.54 -8.22 17.67 5.56 0.10 -8.12 16 12 N -0.62 -5.96 3.18 -172.70 -0.55 -6.51 16 13 C 0.09 0.69 10.71 59.85 0.64 1.34 16 14 C 0.09 1.68 4.40 -70.15 -0.31 1.37 16 15 C 0.16 3.50 6.93 -2.97 -0.02 3.48 16 16 N -0.61 -15.06 3.70 -178.10 -0.66 -15.71 16 17 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -26.57 11.38 55.49 0.63 -25.94 16 21 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.11 2.13 8.46 -2.97 -0.03 2.11 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.99 6.36 -51.93 -0.33 0.66 16 28 H 0.06 0.49 6.60 -51.92 -0.34 0.15 16 29 H 0.10 0.70 6.04 -51.93 -0.31 0.39 16 30 H 0.10 0.77 7.79 -51.93 -0.40 0.37 16 31 H 0.10 0.98 7.85 -51.93 -0.41 0.57 16 32 H 0.08 0.71 7.81 -51.93 -0.41 0.30 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 37 H 0.07 0.41 6.19 -51.93 -0.32 0.09 16 38 H 0.12 2.36 7.24 -51.93 -0.38 1.99 16 39 H 0.03 0.68 6.71 -51.93 -0.35 0.33 16 40 H 0.08 1.95 7.15 -51.93 -0.37 1.58 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.03 0.63 6.97 -51.93 -0.36 0.27 16 LS Contribution 343.99 15.07 5.18 5.18 Total: -1.00 -33.84 343.99 -7.49 -41.32 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.47 Total: -1.62 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -0.24 Total: 12.67 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -1.12 Total: -57.24 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.18 Total: -16.97 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.84 -7.49 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043510002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.302 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds