Wall clock time and date at job start Tue Mar 31 2020 03:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99913 * 2 1 4 4 O 1.21277 * 119.99504 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.00178 * 359.97438 * 3 2 1 6 6 C 1.53003 * 109.47089 * 185.67713 * 5 3 2 7 7 H 1.08999 * 110.21866 * 307.40010 * 6 5 3 8 8 C 1.54482 * 110.24245 * 69.32988 * 6 5 3 9 9 C 1.54859 * 101.65891 * 144.48096 * 8 6 5 10 10 C 1.51282 * 104.20815 * 335.18265 * 9 8 6 11 11 O 1.21280 * 124.94041 * 196.28422 * 10 9 8 12 12 N 1.34421 * 110.11527 * 16.27402 * 10 9 8 13 13 C 1.46500 * 124.34808 * 180.42604 * 12 10 9 14 14 C 1.46502 * 119.99647 * 179.97438 * 2 1 3 15 15 C 1.53948 * 113.73865 * 36.68138 * 14 2 1 16 16 N 1.47581 * 86.11482 * 222.03981 * 15 14 2 17 17 C 1.36935 * 134.49794 * 204.63956 * 16 15 14 18 18 H 1.07998 * 120.00344 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99488 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00260 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47135 * 90.00069 * 21 19 17 23 23 H 1.48498 * 109.46682 * 210.00018 * 21 19 17 24 24 H 1.48499 * 109.46925 * 329.99862 * 21 19 17 25 25 C 1.47589 * 91.01295 * 24.64215 * 16 15 14 26 26 H 1.08997 * 109.47309 * 90.00477 * 1 2 3 27 27 H 1.09003 * 109.47292 * 210.00385 * 1 2 3 28 28 H 1.09009 * 109.47302 * 330.00409 * 1 2 3 29 29 H 1.09000 * 109.47272 * 65.67727 * 5 3 2 30 30 H 1.09001 * 109.47318 * 305.67840 * 5 3 2 31 31 H 1.09007 * 110.96692 * 262.62089 * 8 6 5 32 32 H 1.09000 * 110.97398 * 26.38206 * 8 6 5 33 33 H 1.09004 * 110.46255 * 216.51121 * 9 8 6 34 34 H 1.08994 * 110.49185 * 93.87792 * 9 8 6 35 35 H 1.08999 * 109.47039 * 274.85657 * 13 12 10 36 36 H 1.08996 * 109.47127 * 34.85982 * 13 12 10 37 37 H 1.08999 * 109.46718 * 154.86292 * 13 12 10 38 38 H 1.09005 * 112.93888 * 168.40693 * 14 2 1 39 39 H 1.08992 * 113.77277 * 336.34114 * 15 14 2 40 40 H 1.09004 * 113.76912 * 107.74262 * 15 14 2 41 41 H 0.97001 * 120.00107 * 180.02562 * 20 19 17 42 42 H 1.09001 * 113.76487 * 221.05838 * 25 16 15 43 43 H 1.08998 * 113.77208 * 89.65701 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1671 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3736 3.6316 -0.1432 7 1 3.1575 3.5532 0.6101 8 6 2.9913 3.6364 -1.5591 9 6 3.1322 5.1538 -1.8340 10 6 2.0834 5.7905 -0.9490 11 8 1.6726 6.9256 -1.0651 12 7 1.6729 4.9148 -0.0154 13 6 0.6562 5.2041 0.9990 14 6 2.1974 -1.2688 0.0006 15 6 1.5285 -2.3709 -0.8408 16 7 1.8680 -3.2838 0.2680 17 6 2.0736 -4.6337 0.3712 18 1 2.3180 -5.0712 1.3279 19 6 1.9678 -5.4397 -0.7540 20 7 1.6694 -4.9066 -1.9198 21 14 2.2474 -7.2814 -0.6132 22 1 0.9589 -7.9563 -0.3139 23 1 2.7913 -7.7987 -1.8945 24 1 3.2143 -7.5529 0.4807 25 6 1.8971 -2.1573 1.2212 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8901 0.5138 29 1 0.8368 2.5755 0.9356 30 1 0.6850 2.4871 -0.8356 31 1 3.9649 3.1461 -1.5615 32 1 2.3195 3.1696 -2.2794 33 1 2.9297 5.3715 -2.8827 34 1 4.1274 5.5010 -1.5566 35 1 1.1245 5.6917 1.8540 36 1 -0.1023 5.8625 0.5758 37 1 0.1902 4.2732 1.3221 38 1 3.2615 -1.1452 -0.2012 39 1 0.4569 -2.2281 -0.9798 40 1 2.0533 -2.5939 -1.7698 41 1 1.5951 -5.4700 -2.7059 42 1 2.7161 -2.2099 1.9385 43 1 0.9337 -1.9517 1.6879 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043510002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:46 Heat of formation + Delta-G solvation = -25.147980 kcal Electronic energy + Delta-G solvation = -24134.318870 eV Core-core repulsion = 20601.909111 eV Total energy + Delta-G solvation = -3532.409759 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77030 -40.92804 -39.29385 -37.62611 -35.87941 -34.04236 -33.67374 -32.07302 -29.56453 -27.82880 -27.52037 -26.60511 -26.53237 -24.70844 -22.77100 -21.18909 -20.34109 -19.80069 -18.84870 -18.40228 -17.70170 -17.42601 -17.10652 -16.64395 -16.56493 -16.17087 -15.69066 -15.06074 -14.99289 -14.75408 -14.53469 -14.16957 -13.88397 -13.73201 -13.56486 -13.33951 -13.20374 -13.18293 -13.11837 -13.00808 -12.81135 -12.67217 -12.52734 -12.09729 -11.96565 -11.94374 -11.84963 -11.52511 -10.93056 -10.86968 -10.72849 -9.76247 -9.49895 -8.94944 -7.92839 -5.26593 1.46375 1.48115 1.51331 1.56889 1.67225 1.83502 2.20599 2.49751 3.26942 3.33005 3.43472 3.50251 3.69910 3.72803 3.88196 4.04422 4.22362 4.31021 4.37063 4.39456 4.44103 4.49830 4.55771 4.63478 4.73048 4.77534 4.85325 4.87185 4.88455 4.93496 5.02574 5.11532 5.19224 5.21479 5.27294 5.48478 5.52223 5.72941 5.90805 6.05745 6.53737 6.89921 7.11450 7.23472 7.57941 8.51412 9.23967 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.040559 B = 0.002858 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.190670 B = 9793.927854 C =10025.088848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.600 5.600 3 C 0.515 3.485 4 O -0.578 6.578 5 C -0.138 4.138 6 C 0.148 3.852 7 H 0.087 0.913 8 C -0.121 4.121 9 C -0.149 4.149 10 C 0.509 3.491 11 O -0.583 6.583 12 N -0.614 5.614 13 C 0.083 3.917 14 C 0.119 3.881 15 C 0.160 3.840 16 N -0.638 5.638 17 C -0.236 4.236 18 H 0.085 0.915 19 C -0.064 4.064 20 N -0.951 5.951 21 Si 0.980 3.020 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.269 1.269 25 C 0.113 3.887 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.250 0.750 42 H 0.049 0.951 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 18.301 4.328 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.332 5.332 3 C 0.304 3.696 4 O -0.458 6.458 5 C -0.178 4.178 6 C 0.044 3.956 7 H 0.105 0.895 8 C -0.158 4.158 9 C -0.189 4.189 10 C 0.298 3.702 11 O -0.464 6.464 12 N -0.346 5.346 13 C -0.057 4.057 14 C 0.013 3.987 15 C 0.034 3.966 16 N -0.365 5.365 17 C -0.364 4.364 18 H 0.102 0.898 19 C -0.257 4.257 20 N -0.600 5.600 21 Si 0.808 3.192 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.194 1.194 25 C -0.013 4.013 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.303 18.575 4.254 19.340 hybrid contribution 0.040 -1.365 -0.133 1.372 sum -3.263 17.211 4.122 17.996 Atomic orbital electron populations 1.22038 0.77491 1.04484 1.03052 1.47994 1.08250 1.04928 1.72066 1.20945 0.87702 0.85815 0.75097 1.90686 1.15635 1.87880 1.51589 1.21995 0.99125 0.89335 1.07328 1.21417 0.93496 0.81268 0.99390 0.89536 1.22698 1.03358 0.94878 0.94908 1.22423 0.99363 0.95796 1.01326 1.21379 0.82655 0.84524 0.81594 1.90688 1.62100 1.19871 1.73708 1.48358 1.40499 1.13955 1.31826 1.21801 0.90372 1.03267 0.90302 1.23218 0.96900 0.81335 0.97201 1.22497 0.96595 0.84931 0.92588 1.45991 1.81457 1.02327 1.06738 1.19369 1.40162 0.81830 0.95030 0.89750 1.25626 1.02376 1.02518 0.95225 1.69989 1.55507 1.35345 0.99145 0.85066 0.77808 0.79589 0.76784 1.21101 1.22098 1.19406 1.23091 0.99167 0.85506 0.93501 0.91677 0.91583 0.87308 0.85374 0.86263 0.88850 0.89516 0.87033 0.86679 0.92161 0.91461 0.87791 0.88731 0.94449 0.94419 0.94149 0.93283 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 8.74 127.77 1.12 2.44 16 2 N -0.60 -15.76 3.09 -828.33 -2.56 -18.32 16 3 C 0.52 12.37 7.42 87.66 0.65 13.02 16 4 O -0.58 -18.34 14.61 -3.02 -0.04 -18.39 16 5 C -0.14 -1.91 3.46 29.85 0.10 -1.80 16 6 C 0.15 2.36 2.93 45.45 0.13 2.50 16 7 H 0.09 1.58 7.81 -2.39 -0.02 1.56 16 8 C -0.12 -1.94 5.93 31.73 0.19 -1.75 16 9 C -0.15 -2.36 6.87 30.67 0.21 -2.15 16 10 C 0.51 11.07 8.02 87.90 0.71 11.77 16 11 O -0.58 -17.51 17.67 -3.03 -0.05 -17.57 16 12 N -0.61 -10.30 3.18 -818.89 -2.61 -12.91 16 13 C 0.08 1.02 10.71 127.77 1.37 2.39 16 14 C 0.12 4.35 4.40 46.75 0.21 4.56 16 15 C 0.16 7.24 6.93 86.48 0.60 7.84 16 16 N -0.64 -31.89 3.70 -717.37 -2.65 -34.55 16 17 C -0.24 -13.01 10.70 84.03 0.90 -12.11 16 18 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 19 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 20 N -0.95 -56.24 11.38 21.65 0.25 -56.00 16 21 Si 0.98 44.95 29.55 68.60 2.03 46.97 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C 0.11 4.37 8.46 86.48 0.73 5.10 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.45 6.36 -2.39 -0.02 1.43 16 28 H 0.11 1.07 6.60 -2.38 -0.02 1.05 16 29 H 0.13 1.08 6.04 -2.39 -0.01 1.07 16 30 H 0.12 1.28 7.79 -2.39 -0.02 1.26 16 31 H 0.09 1.70 7.85 -2.38 -0.02 1.68 16 32 H 0.09 1.31 7.81 -2.39 -0.02 1.29 16 33 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.94 8.04 -2.39 -0.02 0.92 16 37 H 0.10 0.65 6.19 -2.39 -0.01 0.63 16 38 H 0.09 3.91 7.24 -2.38 -0.02 3.89 16 39 H 0.04 1.64 6.71 -2.39 -0.02 1.62 16 40 H 0.04 1.99 7.15 -2.38 -0.02 1.97 16 41 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 2.02 6.97 -2.39 -0.02 2.00 16 Total: -1.00 -75.65 343.99 2.74 -72.91 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.01 Total: 9.16 kcal Atomic # 6 Polarization: 21.30 SS G_CDS: 7.38 Total: 28.68 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -7.57 Total: -121.77 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.10 Total: -35.96 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -75.65 2.74 -72.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043510002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.759 kcal (2) G-P(sol) polarization free energy of solvation -75.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds