Wall clock time and date at job start Tue Mar 31 2020 03:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00302 * 2 1 4 4 N 1.34779 * 119.99900 * 180.02562 * 2 1 3 5 5 C 1.47577 * 134.49651 * 179.97438 * 4 2 1 6 6 C 1.53947 * 86.11991 * 155.35919 * 5 4 2 7 7 C 1.50698 * 113.73888 * 137.95170 * 6 5 4 8 8 O 1.21283 * 120.00472 * 1.93111 * 7 6 5 9 9 N 1.34777 * 119.99538 * 181.92449 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 C 1.53009 * 110.64265 * 300.97893 * 10 9 7 12 12 C 1.55154 * 110.72156 * 177.83849 * 10 9 7 13 13 C 1.55389 * 101.36390 * 277.04318 * 12 10 9 14 14 N 1.47415 * 104.87481 * 323.01292 * 13 12 10 15 15 C 1.36941 * 125.65411 * 204.09517 * 14 13 12 16 16 H 1.07989 * 120.00541 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99429 * 0.04459 * 15 14 13 18 18 N 1.31625 * 120.00217 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99894 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47296 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46943 * 120.00181 * 19 17 15 22 22 H 1.48503 * 109.47424 * 239.99907 * 19 17 15 23 23 C 1.47026 * 108.70109 * 24.13489 * 14 13 12 24 24 C 1.47814 * 134.45298 * 359.86644 * 4 2 1 25 25 H 1.08999 * 109.47175 * 240.00220 * 1 2 3 26 26 H 1.09001 * 109.46698 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47009 * 119.99710 * 1 2 3 28 28 H 1.09003 * 113.76464 * 41.05511 * 5 4 2 29 29 H 1.09004 * 113.77142 * 269.66411 * 5 4 2 30 30 H 1.08996 * 113.74195 * 269.15940 * 6 5 4 31 31 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 32 32 H 1.09000 * 109.47055 * 59.29932 * 11 10 9 33 33 H 1.08997 * 109.47044 * 179.30022 * 11 10 9 34 34 H 1.08998 * 109.46903 * 299.29716 * 11 10 9 35 35 H 1.08999 * 111.00630 * 35.21308 * 12 10 9 36 36 H 1.09003 * 111.01004 * 159.06626 * 12 10 9 37 37 H 1.09009 * 110.34195 * 204.16270 * 13 12 10 38 38 H 1.08996 * 110.34927 * 81.87284 * 13 12 10 39 39 H 0.96997 * 119.99859 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.88047 * 239.51985 * 23 14 13 41 41 H 1.09007 * 109.88197 * 118.36211 * 23 14 13 42 42 H 1.09008 * 113.76917 * 90.38213 * 24 4 2 43 43 H 1.09001 * 113.84146 * 318.91701 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6097 -1.5367 -0.0012 6 6 3.1596 -2.8624 0.6391 7 6 3.8592 -4.0744 0.0800 8 8 4.7156 -3.9427 -0.7686 9 7 3.5332 -5.3048 0.5232 10 6 4.2090 -6.4835 -0.0245 11 6 4.0011 -6.5698 -1.5380 12 6 3.7094 -7.7763 0.6727 13 6 4.5841 -7.7891 1.9570 14 7 5.8985 -7.2808 1.5247 15 6 7.0941 -7.5312 2.1437 16 1 8.0061 -7.1100 1.7473 17 6 7.1338 -8.3267 3.2805 18 7 6.0222 -8.8400 3.7637 19 14 8.7647 -8.6690 4.1245 20 1 9.8564 -7.9807 3.3898 21 1 8.7146 -8.1659 5.5209 22 1 9.0197 -10.1319 4.1343 23 6 5.7132 -6.4595 0.3194 24 6 1.7847 -2.5913 0.0013 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 4.2235 -0.9185 0.6540 29 1 4.0332 -1.6521 -0.9989 30 1 3.1497 -2.8423 1.7288 31 1 2.8480 -5.4102 1.2018 32 1 4.3978 -5.6714 -2.0110 33 1 4.5213 -7.4451 -1.9268 34 1 2.9361 -6.6542 -1.7541 35 1 2.6499 -7.7033 0.9183 36 1 3.9064 -8.6537 0.0567 37 1 4.6779 -8.8048 2.3415 38 1 4.1544 -7.1340 2.7148 39 1 6.0500 -9.3962 4.5579 40 1 6.2890 -6.8777 -0.5062 41 1 6.0324 -5.4358 0.5156 42 1 1.6713 -3.0171 -0.9958 43 1 0.9439 -2.8138 0.6583 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046273307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:51 Heat of formation + Delta-G solvation = -5.111753 kcal Electronic energy + Delta-G solvation = -24371.630416 eV Core-core repulsion = 20840.089493 eV Total energy + Delta-G solvation = -3531.540923 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.94737 -39.54349 -38.02268 -36.84912 -34.06974 -32.08736 -31.29995 -30.11258 -28.82303 -28.56597 -26.42559 -25.71997 -24.18770 -23.30795 -20.56884 -20.17725 -19.23275 -19.09216 -17.69209 -17.16757 -16.83641 -16.08549 -15.65600 -15.40241 -14.94845 -14.71469 -14.26461 -13.73705 -13.67295 -13.23025 -13.12588 -12.95071 -12.81396 -12.69727 -12.56871 -12.28805 -12.17104 -11.94327 -11.78325 -11.60579 -11.27406 -10.96089 -10.89048 -10.47106 -10.39159 -10.16569 -10.07763 -9.96213 -9.69389 -9.37031 -8.96011 -8.72846 -8.66688 -6.84075 -5.68036 -3.08359 2.35864 2.49724 2.67673 3.35023 3.38895 3.45108 3.47337 4.02519 4.16017 4.47614 4.60393 4.74630 4.89675 4.93127 4.98617 5.06588 5.17704 5.19188 5.34418 5.36406 5.45180 5.46617 5.52423 5.62878 5.68908 5.83898 5.97809 6.10871 6.18037 6.29851 6.40531 6.46117 6.64054 6.78428 7.07523 7.38930 7.40855 7.61393 7.72571 7.81154 7.88641 8.32074 8.40320 9.20790 9.81377 10.45618 11.36353 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.003382 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.171239 B = 8277.496559 C = 8717.451244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.533 3.467 3 O -0.547 6.547 4 N -0.649 5.649 5 C 0.130 3.870 6 C -0.151 4.151 7 C 0.525 3.475 8 O -0.532 6.532 9 N -0.703 5.703 10 C 0.158 3.842 11 C -0.150 4.150 12 C -0.147 4.147 13 C 0.153 3.847 14 N -0.604 5.604 15 C -0.217 4.217 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.925 5.925 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.137 3.863 24 C 0.120 3.880 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.398 0.602 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.010 0.990 39 H 0.251 0.749 40 H 0.030 0.970 41 H 0.032 0.968 42 H 0.093 0.907 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.609 8.718 -7.416 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.324 3.676 3 O -0.425 6.425 4 N -0.385 5.385 5 C 0.008 3.992 6 C -0.173 4.173 7 C 0.310 3.690 8 O -0.409 6.409 9 N -0.353 5.353 10 C 0.072 3.928 11 C -0.209 4.209 12 C -0.186 4.186 13 C 0.028 3.972 14 N -0.331 5.331 15 C -0.345 4.345 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.574 5.574 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.011 3.989 24 C -0.003 4.003 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.144 0.856 31 H 0.233 0.767 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.028 0.972 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.111 0.889 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.678 9.467 -7.854 18.396 hybrid contribution 0.437 -0.309 0.932 1.075 sum -13.242 9.159 -6.921 17.525 Atomic orbital electron populations 1.21867 0.91239 1.05384 1.04241 1.20507 0.90246 0.81662 0.75231 1.90737 1.70919 1.30446 1.50350 1.50103 1.09313 1.05315 1.73809 1.23037 0.83122 0.90852 1.02203 1.23379 0.96782 0.94257 1.02925 1.19989 0.82909 0.83897 0.82240 1.90689 1.31926 1.86015 1.32230 1.45997 1.41250 1.05524 1.42525 1.21382 0.93842 0.84687 0.92888 1.22050 1.00939 1.03194 0.94689 1.23438 0.99369 0.95234 1.00537 1.22017 0.82960 1.02310 0.89908 1.44510 1.03843 1.56580 1.28120 1.19141 0.84757 1.24711 1.05934 0.90483 1.24761 0.97372 1.00407 0.98255 1.69781 1.24495 1.38500 1.24610 0.85999 0.82677 0.77662 0.79206 1.20523 1.21810 1.21751 1.21595 0.91610 0.95295 0.90407 1.23175 0.96475 0.79318 1.01359 0.89391 0.88921 0.89471 0.89411 0.88022 0.85605 0.76744 0.90827 0.91773 0.93194 0.91858 0.90545 0.87476 0.97164 0.93855 0.95223 0.94978 0.88921 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.07 36.01 0.36 -0.74 16 2 C 0.53 6.08 8.17 -10.98 -0.09 5.99 16 3 O -0.55 -8.79 17.81 5.56 0.10 -8.69 16 4 N -0.65 -6.63 3.61 -178.18 -0.64 -7.28 16 5 C 0.13 1.47 8.17 -2.97 -0.02 1.45 16 6 C -0.15 -1.49 4.33 -90.83 -0.39 -1.89 16 7 C 0.53 7.09 6.58 -10.99 -0.07 7.01 16 8 O -0.53 -9.05 12.86 5.55 0.07 -8.97 16 9 N -0.70 -9.51 5.15 -45.91 -0.24 -9.75 16 10 C 0.16 2.58 0.80 -129.99 -0.10 2.48 16 11 C -0.15 -2.16 8.40 37.16 0.31 -1.84 16 12 C -0.15 -2.47 6.11 -24.32 -0.15 -2.61 16 13 C 0.15 3.46 5.88 -2.27 -0.01 3.45 16 14 N -0.60 -15.18 3.40 -169.77 -0.58 -15.75 16 15 C -0.22 -6.04 10.27 -15.06 -0.15 -6.19 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 18 N -0.92 -26.28 10.09 55.49 0.56 -25.72 16 19 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 C 0.14 2.94 6.16 -3.07 -0.02 2.92 16 24 C 0.12 0.87 8.18 -2.83 -0.02 0.85 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.10 1.24 7.43 -51.93 -0.39 0.86 16 30 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.40 4.43 8.48 -40.82 -0.35 4.09 16 32 H 0.07 1.15 6.19 -51.93 -0.32 0.82 16 33 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 36 H 0.08 1.28 8.05 -51.93 -0.42 0.87 16 37 H 0.11 2.78 5.87 -51.92 -0.31 2.47 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.03 0.65 7.80 -51.93 -0.41 0.25 16 41 H 0.03 0.75 6.69 -51.92 -0.35 0.40 16 42 H 0.09 0.64 8.09 -51.92 -0.42 0.22 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 348.45 15.07 5.25 5.25 Total: -1.00 -34.63 348.45 -7.68 -42.30 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.72 Total: 1.21 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -0.46 Total: 10.41 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.90 Total: -58.49 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.17 Total: -17.67 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.63 -7.68 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046273307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.193 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds