Wall clock time and date at job start Tue Mar 31 2020 03:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00302 * 2 1 4 4 N 1.34779 * 119.99900 * 180.02562 * 2 1 3 5 5 C 1.47577 * 134.49651 * 179.97438 * 4 2 1 6 6 C 1.53947 * 86.11991 * 155.35919 * 5 4 2 7 7 C 1.50698 * 113.73888 * 137.95170 * 6 5 4 8 8 O 1.21283 * 120.00472 * 1.93111 * 7 6 5 9 9 N 1.34777 * 119.99538 * 181.92449 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 C 1.53009 * 110.64265 * 300.97893 * 10 9 7 12 12 C 1.55154 * 110.72156 * 177.83849 * 10 9 7 13 13 C 1.55389 * 101.36390 * 277.04318 * 12 10 9 14 14 N 1.47415 * 104.87481 * 323.01292 * 13 12 10 15 15 C 1.36941 * 125.65411 * 204.09517 * 14 13 12 16 16 H 1.07989 * 120.00541 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99429 * 0.04459 * 15 14 13 18 18 N 1.31625 * 120.00217 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99894 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47296 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46943 * 120.00181 * 19 17 15 22 22 H 1.48503 * 109.47424 * 239.99907 * 19 17 15 23 23 C 1.47026 * 108.70109 * 24.13489 * 14 13 12 24 24 C 1.47814 * 134.45298 * 359.86644 * 4 2 1 25 25 H 1.08999 * 109.47175 * 240.00220 * 1 2 3 26 26 H 1.09001 * 109.46698 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47009 * 119.99710 * 1 2 3 28 28 H 1.09003 * 113.76464 * 41.05511 * 5 4 2 29 29 H 1.09004 * 113.77142 * 269.66411 * 5 4 2 30 30 H 1.08996 * 113.74195 * 269.15940 * 6 5 4 31 31 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 32 32 H 1.09000 * 109.47055 * 59.29932 * 11 10 9 33 33 H 1.08997 * 109.47044 * 179.30022 * 11 10 9 34 34 H 1.08998 * 109.46903 * 299.29716 * 11 10 9 35 35 H 1.08999 * 111.00630 * 35.21308 * 12 10 9 36 36 H 1.09003 * 111.01004 * 159.06626 * 12 10 9 37 37 H 1.09009 * 110.34195 * 204.16270 * 13 12 10 38 38 H 1.08996 * 110.34927 * 81.87284 * 13 12 10 39 39 H 0.96997 * 119.99859 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.88047 * 239.51985 * 23 14 13 41 41 H 1.09007 * 109.88197 * 118.36211 * 23 14 13 42 42 H 1.09008 * 113.76917 * 90.38213 * 24 4 2 43 43 H 1.09001 * 113.84146 * 318.91701 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6097 -1.5367 -0.0012 6 6 3.1596 -2.8624 0.6391 7 6 3.8592 -4.0744 0.0800 8 8 4.7156 -3.9427 -0.7686 9 7 3.5332 -5.3048 0.5232 10 6 4.2090 -6.4835 -0.0245 11 6 4.0011 -6.5698 -1.5380 12 6 3.7094 -7.7763 0.6727 13 6 4.5841 -7.7891 1.9570 14 7 5.8985 -7.2808 1.5247 15 6 7.0941 -7.5312 2.1437 16 1 8.0061 -7.1100 1.7473 17 6 7.1338 -8.3267 3.2805 18 7 6.0222 -8.8400 3.7637 19 14 8.7647 -8.6690 4.1245 20 1 9.8564 -7.9807 3.3898 21 1 8.7146 -8.1659 5.5209 22 1 9.0197 -10.1319 4.1343 23 6 5.7132 -6.4595 0.3194 24 6 1.7847 -2.5913 0.0013 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 4.2235 -0.9185 0.6540 29 1 4.0332 -1.6521 -0.9989 30 1 3.1497 -2.8423 1.7288 31 1 2.8480 -5.4102 1.2018 32 1 4.3978 -5.6714 -2.0110 33 1 4.5213 -7.4451 -1.9268 34 1 2.9361 -6.6542 -1.7541 35 1 2.6499 -7.7033 0.9183 36 1 3.9064 -8.6537 0.0567 37 1 4.6779 -8.8048 2.3415 38 1 4.1544 -7.1340 2.7148 39 1 6.0500 -9.3962 4.5579 40 1 6.2890 -6.8777 -0.5062 41 1 6.0324 -5.4358 0.5156 42 1 1.6713 -3.0171 -0.9958 43 1 0.9439 -2.8138 0.6583 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046273307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:49 Heat of formation + Delta-G solvation = -30.740173 kcal Electronic energy + Delta-G solvation = -24372.741748 eV Core-core repulsion = 20840.089493 eV Total energy + Delta-G solvation = -3532.652255 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90240 -40.66713 -39.20615 -38.07295 -35.70020 -33.66295 -32.28990 -31.55094 -30.32552 -29.40060 -27.52489 -27.15402 -25.56255 -24.58348 -22.23997 -21.38290 -20.40874 -20.00498 -19.02875 -18.45312 -17.96498 -17.16568 -16.84973 -16.64199 -16.39748 -16.01959 -15.55725 -15.35150 -14.94628 -14.35827 -14.11400 -14.01647 -13.95138 -13.71164 -13.58290 -13.34323 -13.27051 -13.22508 -13.01335 -12.88581 -12.82621 -12.76471 -12.13597 -12.01038 -11.97228 -11.91740 -11.66201 -11.48860 -11.08515 -10.74718 -10.54341 -9.98104 -9.82444 -8.86664 -7.78566 -5.21319 1.45446 1.45884 1.53797 1.56207 1.62075 1.71411 2.29781 2.48522 3.19814 3.30860 3.47791 3.63307 3.74668 3.86638 3.97413 4.06748 4.17827 4.22839 4.33640 4.46368 4.50971 4.59055 4.66072 4.67719 4.72255 4.75849 4.87622 4.92841 4.95750 5.02414 5.06901 5.10849 5.15112 5.39294 5.44438 5.65660 5.73722 5.83814 6.33326 6.60988 6.69404 7.05201 7.12765 7.34539 7.79059 8.41492 9.22502 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.003382 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.171239 B = 8277.496559 C = 8717.451244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.523 3.477 3 O -0.608 6.608 4 N -0.648 5.648 5 C 0.117 3.883 6 C -0.140 4.140 7 C 0.525 3.475 8 O -0.571 6.571 9 N -0.696 5.696 10 C 0.170 3.830 11 C -0.141 4.141 12 C -0.126 4.126 13 C 0.154 3.846 14 N -0.624 5.624 15 C -0.240 4.240 16 H 0.067 0.933 17 C -0.060 4.060 18 N -0.942 5.942 19 Si 0.975 3.025 20 H -0.275 1.275 21 H -0.290 1.290 22 H -0.287 1.287 23 C 0.135 3.865 24 C 0.135 3.865 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.414 0.586 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.073 0.927 38 H -0.003 1.003 39 H 0.248 0.752 40 H 0.017 0.983 41 H 0.008 0.992 42 H 0.104 0.896 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.428 8.218 -7.613 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.316 3.684 3 O -0.490 6.490 4 N -0.384 5.384 5 C -0.006 4.006 6 C -0.162 4.162 7 C 0.311 3.689 8 O -0.450 6.450 9 N -0.347 5.347 10 C 0.084 3.916 11 C -0.199 4.199 12 C -0.165 4.165 13 C 0.029 3.971 14 N -0.350 5.350 15 C -0.369 4.369 16 H 0.085 0.915 17 C -0.253 4.253 18 N -0.592 5.592 19 Si 0.804 3.196 20 H -0.200 1.200 21 H -0.217 1.217 22 H -0.214 1.214 23 C 0.009 3.991 24 C 0.014 3.986 25 H 0.133 0.867 26 H 0.108 0.892 27 H 0.129 0.871 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.159 0.841 31 H 0.251 0.749 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.015 0.985 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.026 0.974 42 H 0.122 0.878 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.547 8.941 -8.052 20.459 hybrid contribution 1.395 -0.149 0.994 1.719 sum -15.152 8.792 -7.058 18.887 Atomic orbital electron populations 1.21888 0.86998 1.06129 1.06583 1.21496 0.92188 0.80879 0.73860 1.90708 1.72439 1.32614 1.53193 1.50205 1.08712 1.06583 1.72862 1.22990 0.84257 0.91966 1.01425 1.23315 0.98148 0.91189 1.03536 1.20551 0.82285 0.84598 0.81446 1.90685 1.33658 1.86561 1.34079 1.45872 1.41241 1.04783 1.42843 1.21135 0.90356 0.85650 0.94507 1.21965 1.03045 1.02482 0.92427 1.23276 1.00570 0.95483 0.97141 1.21855 0.83044 0.99683 0.92516 1.44793 1.04002 1.57264 1.28982 1.19376 0.85875 1.25043 1.06652 0.91463 1.25498 1.00501 1.00399 0.98866 1.70011 1.25888 1.38652 1.24602 0.85064 0.79296 0.77370 0.77911 1.19977 1.21719 1.21400 1.21698 0.95636 0.93066 0.88679 1.23387 0.95904 0.76743 1.02615 0.86688 0.89153 0.87079 0.90721 0.89488 0.84098 0.74911 0.92223 0.91886 0.89816 0.87497 0.90205 0.90907 0.98538 0.94198 0.96496 0.97412 0.87841 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 10.07 71.24 0.72 -0.82 16 2 C 0.52 11.19 8.17 87.66 0.72 11.91 16 3 O -0.61 -19.87 17.81 -3.02 -0.05 -19.93 16 4 N -0.65 -12.02 3.61 -836.03 -3.02 -15.04 16 5 C 0.12 2.63 8.17 86.49 0.71 3.34 16 6 C -0.14 -2.46 4.33 -10.87 -0.05 -2.51 16 7 C 0.52 13.39 6.58 87.66 0.58 13.97 16 8 O -0.57 -19.43 12.86 -3.04 -0.04 -19.47 16 9 N -0.70 -17.12 5.15 -417.57 -2.15 -19.27 16 10 C 0.17 5.27 0.80 4.79 0.00 5.27 16 11 C -0.14 -3.69 8.40 71.99 0.61 -3.09 16 12 C -0.13 -3.91 6.11 32.15 0.20 -3.72 16 13 C 0.15 6.93 5.88 87.03 0.51 7.44 16 14 N -0.62 -31.97 3.40 -691.04 -2.35 -34.31 16 15 C -0.24 -13.73 10.27 84.03 0.86 -12.86 16 16 H 0.07 3.84 7.83 -2.92 -0.02 3.82 16 17 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 18 N -0.94 -54.29 10.09 21.65 0.22 -54.07 16 19 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 23 C 0.14 5.88 6.16 86.73 0.53 6.41 16 24 C 0.14 1.42 8.18 86.45 0.71 2.13 16 25 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.09 0.97 8.12 -2.39 -0.02 0.95 16 27 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.09 2.21 7.43 -2.39 -0.02 2.19 16 30 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.41 7.67 8.48 -92.71 -0.79 6.89 16 32 H 0.06 1.77 6.19 -2.39 -0.01 1.76 16 33 H 0.06 1.66 8.12 -2.39 -0.02 1.64 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.11 2.43 8.06 -2.39 -0.02 2.41 16 36 H 0.08 2.47 8.05 -2.39 -0.02 2.45 16 37 H 0.07 3.82 5.87 -2.38 -0.01 3.81 16 38 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 40 H 0.02 0.77 7.80 -2.39 -0.02 0.75 16 41 H 0.01 0.38 6.69 -2.38 -0.02 0.36 16 42 H 0.10 0.96 8.09 -2.38 -0.02 0.94 16 43 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -80.49 348.45 1.42 -79.07 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.23 Total: 10.61 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 6.56 Total: 24.58 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -7.30 Total: -122.70 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.09 Total: -39.40 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -80.49 1.42 -79.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046273307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.328 kcal (2) G-P(sol) polarization free energy of solvation -80.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds