Wall clock time and date at job start Tue Mar 31 2020 03:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 120.00382 * 2 1 4 4 C 1.53002 * 109.46962 * 275.60524 * 3 2 1 5 5 H 1.08997 * 112.73674 * 45.52520 * 4 3 2 6 6 C 1.53496 * 113.46685 * 274.77811 * 4 3 2 7 7 C 1.53614 * 83.30318 * 219.17052 * 6 4 3 8 8 N 1.47066 * 88.00688 * 26.02228 * 7 6 4 9 9 C 1.36938 * 136.06147 * 152.89699 * 8 7 6 10 10 H 1.07999 * 120.00318 * 185.41911 * 9 8 7 11 11 C 1.38811 * 119.99727 * 5.41148 * 9 8 7 12 12 N 1.31622 * 120.00081 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99849 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47424 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47273 * 120.00538 * 13 11 9 16 16 H 1.48508 * 109.47150 * 240.00453 * 13 11 9 17 17 C 1.34783 * 120.00076 * 180.27118 * 2 1 3 18 18 O 1.21273 * 119.99997 * 175.15534 * 17 2 1 19 19 C 1.50696 * 119.99496 * 355.15925 * 17 2 1 20 20 H 1.09002 * 109.67359 * 315.09161 * 19 17 2 21 21 C 1.53351 * 109.67259 * 194.59536 * 19 17 2 22 22 C 1.52919 * 108.67614 * 172.73318 * 21 19 17 23 23 N 1.45758 * 110.48334 * 50.75383 * 22 21 19 24 24 C 1.33343 * 124.10874 * 340.94453 * 23 22 21 25 25 O 1.21287 * 118.24465 * 182.22139 * 24 23 22 26 26 C 1.50195 * 123.52488 * 2.14183 * 24 23 22 27 27 H 1.09003 * 109.47281 * 275.08996 * 1 2 3 28 28 H 1.09006 * 109.46933 * 35.08285 * 1 2 3 29 29 H 1.08997 * 109.47496 * 155.08442 * 1 2 3 30 30 H 1.09001 * 109.46588 * 35.60300 * 3 2 1 31 31 H 1.08997 * 109.47191 * 155.60397 * 3 2 1 32 32 H 1.09003 * 114.20421 * 332.73950 * 6 4 3 33 33 H 1.08994 * 114.20690 * 105.56188 * 6 4 3 34 34 H 1.08993 * 113.41491 * 271.23816 * 7 6 4 35 35 H 1.09003 * 113.55442 * 140.82124 * 7 6 4 36 36 H 0.97000 * 119.99816 * 179.97438 * 12 11 9 37 37 H 1.08994 * 109.60472 * 292.49507 * 21 19 17 38 38 H 1.08999 * 109.60297 * 52.98012 * 21 19 17 39 39 H 1.08998 * 109.30323 * 171.06487 * 22 21 19 40 40 H 1.09002 * 109.30403 * 290.44523 * 22 21 19 41 41 H 0.97002 * 117.94083 * 160.92915 * 23 22 21 42 42 H 1.08999 * 109.44805 * 222.36720 * 26 24 23 43 43 H 1.09006 * 109.35873 * 102.62385 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3306 1.7808 -1.4356 5 1 1.3971 1.7152 -1.9945 6 6 3.5344 1.1933 -2.1851 7 6 3.6523 2.6184 -2.7461 8 7 2.9784 3.0977 -1.5300 9 6 2.9619 4.2590 -0.8044 10 1 2.4194 4.3053 0.1284 11 6 3.6425 5.3765 -1.2676 12 7 4.3034 5.3202 -2.4045 13 14 3.6207 6.9603 -0.2774 14 1 2.8132 6.7637 0.9533 15 1 5.0096 7.3298 0.0962 16 1 3.0222 8.0466 -1.0943 17 6 2.1389 -1.1672 -0.0055 18 8 3.3484 -1.1687 -0.0942 19 6 1.3893 -2.4704 0.0984 20 1 0.6314 -2.3966 0.8783 21 6 2.3671 -3.6030 0.4344 22 6 1.5658 -4.8752 0.7132 23 7 0.6172 -5.1269 -0.3644 24 6 0.2119 -4.2019 -1.2351 25 8 -0.6133 -4.5180 -2.0659 26 6 0.7210 -2.7888 -1.2412 27 1 -0.3634 0.0912 1.0236 28 1 -0.3633 0.8410 -0.5907 29 1 -0.3634 -0.9320 -0.4329 30 1 1.6556 2.0011 0.5983 31 1 3.1897 1.1154 0.4245 32 1 4.3614 0.8971 -1.5398 33 1 3.2737 0.4399 -2.9284 34 1 3.0714 2.7756 -3.6549 35 1 4.6811 2.9666 -2.8381 36 1 4.7787 6.1013 -2.7284 37 1 3.0369 -3.7701 -0.4090 38 1 2.9472 -3.3353 1.3176 39 1 2.2490 -5.7204 0.7966 40 1 1.0229 -4.7607 1.6515 41 1 0.2585 -6.0237 -0.4539 42 1 -0.1114 -2.1039 -1.4025 43 1 1.4471 -2.6699 -2.0455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085543931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:59 Heat of formation + Delta-G solvation = -8.339695 kcal Electronic energy + Delta-G solvation = -24559.255008 eV Core-core repulsion = 21027.574111 eV Total energy + Delta-G solvation = -3531.680897 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96481 -39.57009 -37.97104 -36.50694 -35.32825 -33.46563 -32.15511 -30.05605 -28.54404 -27.85572 -26.77091 -25.09454 -23.59349 -23.34372 -21.88220 -19.58915 -19.19745 -19.03232 -17.62913 -17.24161 -16.73960 -16.44195 -16.01218 -15.46049 -15.27473 -14.77370 -14.56835 -14.18145 -13.98702 -13.84151 -13.60264 -13.39988 -12.82925 -12.65197 -12.33851 -12.11698 -12.00639 -11.84534 -11.47074 -11.38213 -11.25955 -11.05787 -10.84458 -10.74303 -10.39252 -10.36192 -9.84470 -9.76297 -9.57467 -9.43998 -9.36504 -8.78022 -8.30345 -6.84504 -5.75316 -3.07434 2.33822 2.64322 2.95872 3.06419 3.39167 3.43656 3.46827 4.11209 4.29363 4.31749 4.44545 4.47549 4.75344 4.91023 4.93027 4.96148 5.17700 5.27231 5.34062 5.36830 5.46169 5.48651 5.58344 5.62426 5.75097 5.84332 5.90713 6.01607 6.09748 6.41231 6.41948 6.52669 6.66365 6.79091 6.83980 6.96949 7.28591 7.46775 7.55593 7.61325 7.89214 7.99954 8.27118 9.04935 9.72152 10.68117 11.42771 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.032053 B = 0.003298 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.348842 B = 8488.651650 C = 8569.124158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.608 5.608 3 C 0.115 3.885 4 C 0.130 3.870 5 H 0.040 0.960 6 C -0.156 4.156 7 C 0.155 3.845 8 N -0.601 5.601 9 C -0.218 4.218 10 H 0.080 0.920 11 C -0.007 4.007 12 N -0.917 5.917 13 Si 0.910 3.090 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.516 3.484 18 O -0.526 6.526 19 C -0.111 4.111 20 H 0.100 0.900 21 C -0.118 4.118 22 C 0.110 3.890 23 N -0.721 5.721 24 C 0.525 3.475 25 O -0.556 6.556 26 C -0.131 4.131 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.024 0.976 35 H 0.064 0.936 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.399 0.601 42 H 0.112 0.888 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 -20.106 7.510 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.341 5.341 3 C -0.008 4.008 4 C 0.022 3.978 5 H 0.057 0.943 6 C -0.195 4.195 7 C 0.030 3.970 8 N -0.327 5.327 9 C -0.346 4.346 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.564 5.564 13 Si 0.741 3.259 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.302 3.698 18 O -0.402 6.402 19 C -0.132 4.132 20 H 0.118 0.882 21 C -0.156 4.156 22 C -0.015 4.015 23 N -0.373 5.373 24 C 0.312 3.688 25 O -0.434 6.434 26 C -0.171 4.171 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.235 0.765 42 H 0.130 0.870 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.295 -19.631 7.145 22.127 hybrid contribution -0.343 0.773 0.451 0.958 sum -7.637 -18.858 7.597 21.718 Atomic orbital electron populations 1.22020 0.80087 1.03522 1.01979 1.47882 1.06756 1.06591 1.72850 1.21914 0.97389 0.82305 0.99230 1.22414 0.95122 0.87268 0.93003 0.94322 1.23655 0.98801 0.97331 0.99693 1.21996 0.98285 0.87562 0.89173 1.45639 1.50076 1.09567 1.27416 1.18921 1.27947 0.86733 1.00981 0.90214 1.24815 1.00622 0.97757 0.97202 1.69864 1.36595 1.29170 1.20768 0.86076 0.77348 0.83564 0.78931 1.20469 1.21706 1.21771 1.20265 0.87926 0.84751 0.76848 1.90725 1.13836 1.86959 1.48703 1.21450 0.99022 0.94047 0.98730 0.88208 1.21727 0.97261 0.91906 1.04670 1.21455 0.91594 0.98815 0.89587 1.45495 1.46319 1.13678 1.31841 1.20025 0.80889 0.87634 0.80213 1.90784 1.33525 1.80998 1.38111 1.21815 1.03073 0.93770 0.98454 0.92596 0.90556 0.90763 0.91041 0.89347 0.89977 0.93329 0.95855 0.91724 0.93711 0.89744 0.88845 0.90015 0.91375 0.76527 0.86976 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.05 59.84 0.60 1.25 16 2 N -0.61 -8.15 2.87 -181.57 -0.52 -8.67 16 3 C 0.11 2.01 5.39 -4.04 -0.02 1.98 16 4 C 0.13 2.66 4.31 -72.40 -0.31 2.35 16 5 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.16 -3.21 7.72 -26.16 -0.20 -3.41 16 7 C 0.16 3.82 7.28 -8.45 -0.06 3.76 16 8 N -0.60 -15.44 3.65 -176.81 -0.64 -16.09 16 9 C -0.22 -6.06 10.55 -15.06 -0.16 -6.22 16 10 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.62 11.65 55.49 0.65 -26.97 16 13 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 C 0.52 6.78 6.88 -10.98 -0.08 6.70 16 18 O -0.53 -8.88 15.35 5.56 0.09 -8.80 16 19 C -0.11 -0.98 1.74 -91.56 -0.16 -1.14 16 20 H 0.10 0.70 7.61 -51.93 -0.40 0.31 16 21 C -0.12 -0.89 4.63 -26.59 -0.12 -1.01 16 22 C 0.11 0.56 7.17 -4.48 -0.03 0.53 16 23 N -0.72 -5.18 5.45 -61.38 -0.33 -5.51 16 24 C 0.53 5.41 7.71 -11.87 -0.09 5.32 16 25 O -0.56 -8.01 17.78 5.55 0.10 -7.91 16 26 C -0.13 -1.23 5.06 -28.09 -0.14 -1.37 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.79 8.11 -51.93 -0.42 0.36 16 29 H 0.07 0.57 4.07 -51.93 -0.21 0.36 16 30 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 31 H 0.09 1.74 7.09 -51.93 -0.37 1.37 16 32 H 0.08 1.77 7.94 -51.93 -0.41 1.36 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 1.75 7.37 -51.93 -0.38 1.36 16 36 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 38 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.40 2.42 8.80 -40.82 -0.36 2.06 16 42 H 0.11 0.98 5.61 -51.93 -0.29 0.69 16 43 H 0.11 1.12 8.09 -51.93 -0.42 0.70 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -35.30 345.67 -7.97 -43.27 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.61 Total: -0.06 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.87 Total: 8.44 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.85 Total: -57.24 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.18 Total: -16.71 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.30 -7.97 -43.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085543931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.927 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds