Wall clock time and date at job start Tue Mar 31 2020 03:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00319 * 2 1 4 4 C 1.52998 * 109.46803 * 275.66268 * 3 2 1 5 5 H 1.09004 * 112.96885 * 66.94815 * 4 3 2 6 6 C 1.53940 * 113.77085 * 295.26538 * 4 3 2 7 7 C 1.53945 * 86.29312 * 222.09335 * 6 4 3 8 8 N 1.47583 * 113.76744 * 198.76750 * 4 3 2 9 9 C 1.36938 * 134.49772 * 318.94807 * 8 4 3 10 10 H 1.08003 * 119.99382 * 0.74374 * 9 8 4 11 11 C 1.38810 * 120.00071 * 180.75186 * 9 8 4 12 12 N 1.31616 * 120.00278 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99886 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47110 * 89.99442 * 13 11 9 15 15 H 1.48498 * 109.47245 * 209.99572 * 13 11 9 16 16 H 1.48496 * 109.47050 * 329.99834 * 13 11 9 17 17 C 1.34775 * 119.99804 * 179.97438 * 2 1 3 18 18 O 1.21284 * 119.99977 * 179.97438 * 17 2 1 19 19 C 1.50695 * 120.00347 * 0.02562 * 17 2 1 20 20 H 1.09009 * 110.21524 * 320.47229 * 19 17 2 21 21 C 1.54479 * 110.24735 * 82.49074 * 19 17 2 22 22 C 1.54626 * 101.76578 * 93.58772 * 21 19 17 23 23 C 1.51283 * 104.25591 * 24.57965 * 22 21 19 24 24 O 1.21282 * 124.94318 * 164.00777 * 23 22 21 25 25 N 1.34414 * 110.11519 * 344.14858 * 23 22 21 26 26 C 1.46501 * 124.35192 * 179.43401 * 25 23 22 27 27 H 1.09000 * 109.47298 * 264.48429 * 1 2 3 28 28 H 1.09004 * 109.46996 * 24.47722 * 1 2 3 29 29 H 1.08989 * 109.47219 * 144.47927 * 1 2 3 30 30 H 1.09004 * 109.47332 * 35.66034 * 3 2 1 31 31 H 1.09004 * 109.47252 * 155.65951 * 3 2 1 32 32 H 1.09005 * 113.74492 * 336.43647 * 6 4 3 33 33 H 1.08996 * 113.74407 * 107.64273 * 6 4 3 34 34 H 1.08994 * 113.77350 * 137.90654 * 7 6 4 35 35 H 1.09001 * 113.77306 * 269.30767 * 7 6 4 36 36 H 0.96998 * 120.00412 * 180.02562 * 12 11 9 37 37 H 1.09004 * 110.97260 * 211.70969 * 21 19 17 38 38 H 1.09005 * 110.96980 * 335.43334 * 21 19 17 39 39 H 1.08998 * 110.48785 * 143.48012 * 22 21 19 40 40 H 1.09000 * 110.48675 * 265.98536 * 22 21 19 41 41 H 1.08998 * 109.47077 * 269.69771 * 26 25 23 42 42 H 1.09008 * 109.47011 * 149.69686 * 26 25 23 43 43 H 1.08998 * 109.47356 * 29.70178 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3292 1.7814 -1.4355 5 1 1.3736 2.0691 -1.8738 6 6 3.1800 0.8744 -2.3428 7 6 3.7991 2.1727 -2.8914 8 7 3.3943 2.7877 -1.6123 9 6 3.8315 3.8608 -0.8826 10 1 3.3587 4.1030 0.0578 11 6 4.8820 4.6375 -1.3517 12 7 5.4583 4.3422 -2.4975 13 14 5.4778 6.1018 -0.3566 14 1 6.5457 5.6638 0.5777 15 1 6.0171 7.1374 -1.2742 16 1 4.3444 6.6683 0.4177 17 6 2.1388 -1.1672 0.0005 18 8 3.3516 -1.1672 0.0001 19 6 1.3854 -2.4723 0.0005 20 1 0.5135 -2.4039 0.6512 21 6 0.9546 -2.8409 -1.4365 22 6 2.1232 -3.7442 -1.8940 23 6 2.6999 -4.2884 -0.6057 24 8 3.4467 -5.2408 -0.5266 25 7 2.2618 -3.5648 0.4389 26 6 2.6183 -3.8289 1.8351 27 1 -0.3634 -0.0988 1.0229 28 1 -0.3633 0.9353 -0.4258 29 1 -0.3633 -0.8363 -0.5970 30 1 1.6561 2.0009 0.5991 31 1 3.1901 1.1152 0.4236 32 1 3.8862 0.2473 -1.7984 33 1 2.5978 0.3190 -3.0781 34 1 4.8788 2.1198 -3.0311 35 1 3.2761 2.5769 -3.7581 36 1 6.1926 4.8847 -2.8252 37 1 0.0140 -3.3919 -1.4326 38 1 0.8805 -1.9512 -2.0619 39 1 1.7552 -4.5548 -2.5230 40 1 2.8718 -3.1585 -2.4275 41 1 1.8907 -4.5123 2.2729 42 1 2.6191 -2.8926 2.3933 43 1 3.6104 -4.2782 1.8781 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085780327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:34 Heat of formation + Delta-G solvation = 3.958649 kcal Electronic energy + Delta-G solvation = -25030.256685 eV Core-core repulsion = 21499.109084 eV Total energy + Delta-G solvation = -3531.147601 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.11650 -39.27816 -37.70214 -36.21441 -35.33305 -32.98422 -32.13716 -29.52610 -27.80755 -27.68986 -26.82020 -26.29618 -23.34949 -23.05966 -22.09966 -20.07570 -19.08260 -18.92318 -17.61361 -16.89982 -16.60325 -16.26119 -15.70594 -15.35975 -15.07882 -14.65486 -14.24731 -13.94766 -13.72609 -13.62080 -13.40376 -13.30728 -12.81089 -12.78884 -12.57511 -12.41642 -12.30329 -11.95247 -11.71383 -11.48833 -11.36564 -11.02451 -10.86190 -10.68427 -10.43670 -10.00628 -9.90316 -9.82257 -9.69473 -9.52136 -8.79338 -8.76553 -8.40728 -6.83902 -5.72618 -3.05168 2.42921 2.57586 2.73585 3.17669 3.40824 3.44963 3.47244 4.11184 4.16872 4.30247 4.48957 4.57289 4.84154 4.98959 5.04291 5.12441 5.19340 5.29287 5.33388 5.40821 5.45999 5.53361 5.57239 5.57668 5.62091 5.67779 5.85623 5.92782 6.09763 6.24483 6.35598 6.52576 6.65621 6.74634 6.79857 6.90993 7.30192 7.42810 7.55428 7.64948 8.02698 8.04372 8.26243 9.07655 9.74806 10.64607 11.44310 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.023635 B = 0.003894 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.420223 B = 7189.556035 C = 7276.888936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.606 5.606 3 C 0.115 3.885 4 C 0.129 3.871 5 H 0.041 0.959 6 C -0.158 4.158 7 C 0.161 3.839 8 N -0.600 5.600 9 C -0.224 4.224 10 H 0.078 0.922 11 C -0.006 4.006 12 N -0.919 5.919 13 Si 0.909 3.091 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.497 3.503 18 O -0.513 6.513 19 C 0.114 3.886 20 H 0.108 0.892 21 C -0.120 4.120 22 C -0.155 4.155 23 C 0.526 3.474 24 O -0.532 6.532 25 N -0.602 5.602 26 C 0.099 3.901 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.023 0.977 36 H 0.253 0.747 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.454 -14.492 4.266 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C -0.008 4.008 4 C 0.021 3.979 5 H 0.058 0.942 6 C -0.196 4.196 7 C 0.035 3.965 8 N -0.326 5.326 9 C -0.352 4.352 10 H 0.095 0.905 11 C -0.203 4.203 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.281 3.719 18 O -0.387 6.387 19 C 0.006 3.994 20 H 0.126 0.874 21 C -0.158 4.158 22 C -0.195 4.195 23 C 0.315 3.685 24 O -0.409 6.409 25 N -0.336 5.336 26 C -0.042 4.042 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.150 -14.720 4.468 20.901 hybrid contribution 0.116 1.273 0.555 1.394 sum -14.033 -13.447 5.023 20.074 Atomic orbital electron populations 1.21856 0.80001 1.03629 1.01472 1.47831 1.06695 1.06354 1.73191 1.21868 0.97803 0.82254 0.98897 1.22499 0.92875 0.89671 0.92853 0.94190 1.23818 0.99494 0.97661 0.98619 1.22175 0.99792 0.86421 0.88074 1.45933 1.33975 1.31314 1.21399 1.18964 1.12545 1.02762 1.00886 0.90451 1.24762 0.98886 0.99408 0.97230 1.69829 1.25940 1.40677 1.20161 0.86168 0.78681 0.82234 0.78942 1.21544 1.21676 1.20755 1.20809 0.88510 0.85159 0.77398 1.90769 1.13467 1.86727 1.47787 1.21661 0.93084 0.86034 0.98659 0.87436 1.22587 0.98866 1.01330 0.93018 1.22349 0.99187 1.01237 0.96740 1.20810 0.79581 0.81830 0.86302 1.90714 1.35942 1.27873 1.86322 1.47829 1.49280 1.29145 1.07303 1.21535 1.01491 1.01404 0.79796 0.92687 0.90272 0.91405 0.91421 0.88886 0.89706 0.94062 0.91089 0.95874 0.93685 0.88686 0.88327 0.87617 0.87153 0.92467 0.91150 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 9.80 59.84 0.59 1.16 16 2 N -0.61 -7.69 2.79 -181.58 -0.51 -8.20 16 3 C 0.11 1.96 5.38 -4.04 -0.02 1.94 16 4 C 0.13 2.54 4.58 -66.87 -0.31 2.24 16 5 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 6 C -0.16 -3.14 7.25 -25.81 -0.19 -3.33 16 7 C 0.16 3.92 7.50 -2.97 -0.02 3.90 16 8 N -0.60 -15.33 3.58 -170.73 -0.61 -15.94 16 9 C -0.22 -6.25 10.51 -15.06 -0.16 -6.40 16 10 H 0.08 2.06 7.83 -52.48 -0.41 1.64 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 12 N -0.92 -27.76 11.40 55.49 0.63 -27.12 16 13 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.50 6.79 6.40 -10.99 -0.07 6.72 16 18 O -0.51 -9.61 14.51 5.55 0.08 -9.53 16 19 C 0.11 1.10 2.55 -68.17 -0.17 0.92 16 20 H 0.11 0.70 7.31 -51.92 -0.38 0.32 16 21 C -0.12 -0.88 5.77 -25.10 -0.14 -1.03 16 22 C -0.16 -1.54 6.85 -26.74 -0.18 -1.72 16 23 C 0.53 7.24 8.02 -10.86 -0.09 7.15 16 24 O -0.53 -9.31 17.59 5.56 0.10 -9.22 16 25 N -0.60 -7.18 2.56 -174.02 -0.45 -7.62 16 26 C 0.10 1.04 10.96 59.85 0.66 1.69 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 29 H 0.07 0.35 5.94 -51.94 -0.31 0.04 16 30 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 31 H 0.09 1.93 7.26 -51.93 -0.38 1.55 16 32 H 0.08 1.86 6.56 -51.93 -0.34 1.52 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.94 7.19 -51.93 -0.37 1.56 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.71 7.59 -51.93 -0.39 0.32 16 39 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -36.79 349.71 -7.49 -44.28 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.77 Total: -2.18 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -0.21 Total: 12.95 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.93 Total: -58.89 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.18 Total: -18.75 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.79 -7.49 -44.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085780327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.239 kcal (2) G-P(sol) polarization free energy of solvation -36.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds