Wall clock time and date at job start Tue Mar 31 2020 03:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34417 * 124.35057 * 2 1 4 4 O 1.21284 * 124.94521 * 0.36573 * 3 2 1 5 5 C 1.51282 * 110.11809 * 180.38545 * 3 2 1 6 6 C 1.54856 * 104.20939 * 16.26505 * 5 3 2 7 7 C 1.46765 * 124.35125 * 179.97438 * 2 1 3 8 8 H 1.09006 * 110.24262 * 43.91845 * 7 2 1 9 9 C 1.50694 * 110.24802 * 282.00902 * 7 2 1 10 10 O 1.21279 * 119.99987 * 342.62628 * 9 7 2 11 11 N 1.34783 * 120.00272 * 162.62835 * 9 7 2 12 12 C 1.46499 * 119.99918 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46882 * 180.02562 * 12 11 9 14 14 H 1.08997 * 112.85474 * 43.80022 * 13 12 11 15 15 C 1.53781 * 113.61406 * 174.99788 * 13 12 11 16 16 C 1.53786 * 87.17350 * 140.02181 * 15 13 12 17 17 H 1.09000 * 113.61138 * 220.06261 * 16 15 13 18 18 N 1.46496 * 113.61518 * 89.15486 * 16 15 13 19 19 C 1.36940 * 119.99538 * 154.99700 * 18 16 15 20 20 H 1.07999 * 120.00330 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99727 * 180.02562 * 19 18 16 22 22 N 1.31615 * 119.99969 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99953 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46609 * 90.00050 * 23 21 19 25 25 H 1.48497 * 109.47072 * 209.99981 * 23 21 19 26 26 H 1.48490 * 109.47326 * 330.00481 * 23 21 19 27 27 C 1.53782 * 113.68747 * 272.53320 * 13 12 11 28 28 H 1.08992 * 109.46944 * 270.02662 * 1 2 3 29 29 H 1.08998 * 109.46629 * 30.02743 * 1 2 3 30 30 H 1.09002 * 109.47119 * 150.01969 * 1 2 3 31 31 H 1.09001 * 110.49020 * 134.93157 * 5 3 2 32 32 H 1.09000 * 110.49061 * 257.44205 * 5 3 2 33 33 H 1.08995 * 111.04136 * 217.10313 * 6 5 3 34 34 H 1.08999 * 110.99696 * 93.26793 * 6 5 3 35 35 H 0.96999 * 119.99505 * 359.97438 * 11 9 7 36 36 H 1.08995 * 109.47324 * 59.99404 * 12 11 9 37 37 H 1.09003 * 109.46872 * 299.99751 * 12 11 9 38 38 H 1.09002 * 113.61445 * 254.61180 * 15 13 12 39 39 H 1.09002 * 113.61408 * 25.42911 * 15 13 12 40 40 H 0.97001 * 120.00117 * 335.00621 * 18 16 15 41 41 H 0.96999 * 120.00047 * 180.02562 * 22 21 19 42 42 H 1.08997 * 113.61668 * 334.55355 * 27 13 12 43 43 H 1.08998 * 113.61674 * 105.37864 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7947 2.2443 0.0063 5 6 3.6898 0.7378 -0.0096 6 6 3.7016 -0.7509 -0.4357 7 6 2.2931 -1.2117 0.0005 8 1 1.8977 -1.9391 -0.7085 9 6 2.3445 -1.8076 1.3837 10 8 2.0282 -1.1385 2.3444 11 7 2.7421 -3.0843 1.5531 12 6 2.7915 -3.6637 2.8978 13 6 3.2725 -5.1136 2.8109 14 1 4.1181 -5.2392 2.1347 15 6 3.4766 -5.7781 4.1826 16 6 2.8653 -7.0504 3.5722 17 1 2.1930 -7.5792 4.2478 18 7 3.8519 -7.9322 2.9435 19 6 3.5937 -9.2715 2.8215 20 1 2.6626 -9.6775 3.1883 21 6 4.5287 -10.1071 2.2263 22 7 4.2804 -11.3943 2.1086 23 14 6.1389 -9.4046 1.5912 24 1 7.1571 -9.4458 2.6715 25 1 6.6095 -10.2110 0.4364 26 1 5.9302 -7.9988 1.1611 27 6 2.1401 -6.1272 2.5761 28 1 -0.3633 0.0005 1.0276 29 1 -0.3632 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 4.2329 1.3458 -0.7331 32 1 4.1198 0.8554 0.9851 33 1 4.4753 -1.3042 0.0965 34 1 3.8270 -0.8474 -1.5142 35 1 2.9947 -3.6196 0.7847 36 1 1.7965 -3.6366 3.3419 37 1 3.4811 -3.0889 3.5159 38 1 4.5242 -5.8882 4.4629 39 1 2.8704 -5.3391 4.9750 40 1 4.6881 -7.5674 2.6139 41 1 4.9339 -11.9783 1.6930 42 1 1.1674 -5.7847 2.9290 43 1 2.1078 -6.5180 1.5591 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086451212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:25 Heat of formation + Delta-G solvation = -31.088247 kcal Electronic energy + Delta-G solvation = -23624.985878 eV Core-core repulsion = 20092.318529 eV Total energy + Delta-G solvation = -3532.667349 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26340 -39.51275 -38.61349 -36.48866 -34.90578 -33.40839 -33.09373 -30.81793 -29.23125 -27.09673 -27.00165 -25.26485 -23.73905 -22.95640 -21.84385 -20.96769 -19.79038 -18.77393 -17.89425 -17.71225 -17.15996 -16.38348 -15.90938 -15.54216 -15.36600 -14.91676 -14.53970 -14.25585 -14.06572 -13.93503 -13.65993 -13.58255 -13.12362 -12.95076 -12.85815 -12.61327 -12.59378 -12.14441 -11.90867 -11.75875 -11.63351 -11.45153 -10.98422 -10.59803 -10.48488 -10.28540 -10.16620 -10.07582 -9.76046 -9.63440 -9.22916 -9.04543 -8.97426 -7.38287 -5.86696 -3.23409 2.18012 2.29762 2.51821 3.04228 3.26964 3.30928 3.37156 3.87731 3.94544 4.25465 4.41610 4.48815 4.63286 4.80954 4.82320 4.86793 4.92252 4.99164 5.19593 5.21644 5.31338 5.33508 5.33697 5.40212 5.42772 5.47122 5.66159 5.74867 5.81228 6.03038 6.03641 6.14161 6.18382 6.39532 6.52509 6.63841 6.69084 6.80158 7.24586 7.82090 7.90860 7.94945 8.32852 9.10339 9.82378 10.01341 11.31361 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026761 B = 0.002831 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.048266 B = 9886.442453 C =10297.762234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.601 5.601 3 C 0.525 3.475 4 O -0.531 6.531 5 C -0.156 4.156 6 C -0.120 4.120 7 C 0.112 3.888 8 H 0.113 0.887 9 C 0.497 3.503 10 O -0.530 6.530 11 N -0.720 5.720 12 C 0.131 3.869 13 C -0.123 4.123 14 H 0.090 0.910 15 C -0.149 4.149 16 C 0.173 3.827 17 H 0.072 0.928 18 N -0.729 5.729 19 C -0.248 4.248 20 H 0.092 0.908 21 C 0.006 3.994 22 N -0.931 5.931 23 Si 0.885 3.115 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.278 1.278 27 C -0.167 4.167 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.403 0.597 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.362 0.638 41 H 0.261 0.739 42 H 0.072 0.928 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 20.926 -5.965 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.335 5.335 3 C 0.313 3.687 4 O -0.407 6.407 5 C -0.196 4.196 6 C -0.158 4.158 7 C 0.003 3.997 8 H 0.131 0.869 9 C 0.280 3.720 10 O -0.405 6.405 11 N -0.372 5.372 12 C 0.008 3.992 13 C -0.142 4.142 14 H 0.109 0.891 15 C -0.189 4.189 16 C 0.061 3.939 17 H 0.090 0.910 18 N -0.370 5.370 19 C -0.378 4.378 20 H 0.110 0.890 21 C -0.190 4.190 22 N -0.578 5.578 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.204 1.204 27 C -0.208 4.208 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.195 0.805 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.081 21.746 -5.243 22.580 hybrid contribution 1.248 -0.063 -0.832 1.501 sum -1.833 21.683 -6.075 22.593 Atomic orbital electron populations 1.21602 0.77416 1.03053 1.02519 1.47808 1.06551 1.05883 1.73225 1.20806 0.89212 0.84158 0.74489 1.90726 1.78736 1.20903 1.50332 1.22397 0.94899 0.97046 1.05234 1.22635 0.94119 0.95704 1.03310 1.21644 0.93796 0.89013 0.95207 0.86937 1.20932 0.77602 0.82106 0.91315 1.90735 1.47513 1.60531 1.41744 1.46073 1.67831 1.12538 1.10802 1.21494 1.01495 0.93401 0.82796 1.22754 1.00098 0.91582 0.99779 0.89149 1.23467 1.01804 0.98286 0.95298 1.21032 0.91275 0.88735 0.92871 0.91024 1.42509 1.18035 1.05516 1.70898 1.19110 1.03676 0.81740 1.33279 0.89028 1.24694 0.98206 0.95284 1.00850 1.69695 1.35973 1.02833 1.49327 0.86552 0.85091 0.78073 0.78751 1.20999 1.21648 1.20434 1.23892 0.96423 0.97954 1.02495 0.92117 0.90331 0.90943 0.87505 0.87451 0.88448 0.88363 0.76254 0.91352 0.91698 0.91396 0.90002 0.80526 0.92930 0.90990 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 10.95 59.85 0.66 1.48 16 2 N -0.60 -5.92 2.55 -174.03 -0.44 -6.37 16 3 C 0.53 6.09 8.02 -10.86 -0.09 6.00 16 4 O -0.53 -8.21 17.60 5.55 0.10 -8.11 16 5 C -0.16 -1.18 6.86 -26.62 -0.18 -1.37 16 6 C -0.12 -0.63 6.71 -24.97 -0.17 -0.80 16 7 C 0.11 0.83 3.49 -68.16 -0.24 0.59 16 8 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 9 C 0.50 5.14 6.99 -10.99 -0.08 5.06 16 10 O -0.53 -7.82 16.57 5.56 0.09 -7.73 16 11 N -0.72 -6.57 5.56 -60.30 -0.33 -6.90 16 12 C 0.13 1.43 5.51 -4.04 -0.02 1.41 16 13 C -0.12 -1.51 3.63 -89.81 -0.33 -1.84 16 14 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.15 -2.04 7.38 -25.92 -0.19 -2.23 16 16 C 0.17 3.01 4.57 -67.02 -0.31 2.70 16 17 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 18 N -0.73 -16.02 5.12 -52.54 -0.27 -16.29 16 19 C -0.25 -6.67 10.45 -15.06 -0.16 -6.83 16 20 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -28.32 13.97 55.49 0.78 -27.54 16 23 Si 0.89 20.97 27.74 -169.99 -4.71 16.26 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.06 6.52 56.52 0.37 -5.69 16 27 C -0.17 -2.39 7.44 -25.82 -0.19 -2.58 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.44 7.89 -51.93 -0.41 0.03 16 34 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.40 2.80 8.47 -40.82 -0.35 2.45 16 36 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 40 H 0.36 7.74 5.76 -40.82 -0.24 7.50 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.07 0.93 7.90 -51.93 -0.41 0.52 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -35.46 357.14 -7.68 -43.15 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.88 Total: 6.49 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.39 Total: 1.66 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.27 Total: -57.10 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.19 Total: -15.84 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.71 Total: 16.26 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.46 -7.68 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086451212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.060 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds