Wall clock time and date at job start Tue Mar 31 2020 03:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34417 * 124.35057 * 2 1 4 4 O 1.21284 * 124.94521 * 0.36573 * 3 2 1 5 5 C 1.51282 * 110.11809 * 180.38545 * 3 2 1 6 6 C 1.54856 * 104.20939 * 16.26505 * 5 3 2 7 7 C 1.46765 * 124.35125 * 179.97438 * 2 1 3 8 8 H 1.09006 * 110.24262 * 43.91845 * 7 2 1 9 9 C 1.50694 * 110.24802 * 282.00902 * 7 2 1 10 10 O 1.21279 * 119.99987 * 342.62628 * 9 7 2 11 11 N 1.34783 * 120.00272 * 162.62835 * 9 7 2 12 12 C 1.46499 * 119.99918 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46882 * 180.02562 * 12 11 9 14 14 H 1.08997 * 112.85474 * 43.80022 * 13 12 11 15 15 C 1.53781 * 113.61406 * 174.99788 * 13 12 11 16 16 C 1.53786 * 87.17350 * 140.02181 * 15 13 12 17 17 H 1.09000 * 113.61138 * 220.06261 * 16 15 13 18 18 N 1.46496 * 113.61518 * 89.15486 * 16 15 13 19 19 C 1.36940 * 119.99538 * 154.99700 * 18 16 15 20 20 H 1.07999 * 120.00330 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99727 * 180.02562 * 19 18 16 22 22 N 1.31615 * 119.99969 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99953 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46609 * 90.00050 * 23 21 19 25 25 H 1.48497 * 109.47072 * 209.99981 * 23 21 19 26 26 H 1.48490 * 109.47326 * 330.00481 * 23 21 19 27 27 C 1.53782 * 113.68747 * 272.53320 * 13 12 11 28 28 H 1.08992 * 109.46944 * 270.02662 * 1 2 3 29 29 H 1.08998 * 109.46629 * 30.02743 * 1 2 3 30 30 H 1.09002 * 109.47119 * 150.01969 * 1 2 3 31 31 H 1.09001 * 110.49020 * 134.93157 * 5 3 2 32 32 H 1.09000 * 110.49061 * 257.44205 * 5 3 2 33 33 H 1.08995 * 111.04136 * 217.10313 * 6 5 3 34 34 H 1.08999 * 110.99696 * 93.26793 * 6 5 3 35 35 H 0.96999 * 119.99505 * 359.97438 * 11 9 7 36 36 H 1.08995 * 109.47324 * 59.99404 * 12 11 9 37 37 H 1.09003 * 109.46872 * 299.99751 * 12 11 9 38 38 H 1.09002 * 113.61445 * 254.61180 * 15 13 12 39 39 H 1.09002 * 113.61408 * 25.42911 * 15 13 12 40 40 H 0.97001 * 120.00117 * 335.00621 * 18 16 15 41 41 H 0.96999 * 120.00047 * 180.02562 * 22 21 19 42 42 H 1.08997 * 113.61668 * 334.55355 * 27 13 12 43 43 H 1.08998 * 113.61674 * 105.37864 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7947 2.2443 0.0063 5 6 3.6898 0.7378 -0.0096 6 6 3.7016 -0.7509 -0.4357 7 6 2.2931 -1.2117 0.0005 8 1 1.8977 -1.9391 -0.7085 9 6 2.3445 -1.8076 1.3837 10 8 2.0282 -1.1385 2.3444 11 7 2.7421 -3.0843 1.5531 12 6 2.7915 -3.6637 2.8978 13 6 3.2725 -5.1136 2.8109 14 1 4.1181 -5.2392 2.1347 15 6 3.4766 -5.7781 4.1826 16 6 2.8653 -7.0504 3.5722 17 1 2.1930 -7.5792 4.2478 18 7 3.8519 -7.9322 2.9435 19 6 3.5937 -9.2715 2.8215 20 1 2.6626 -9.6775 3.1883 21 6 4.5287 -10.1071 2.2263 22 7 4.2804 -11.3943 2.1086 23 14 6.1389 -9.4046 1.5912 24 1 7.1571 -9.4458 2.6715 25 1 6.6095 -10.2110 0.4364 26 1 5.9302 -7.9988 1.1611 27 6 2.1401 -6.1272 2.5761 28 1 -0.3633 0.0005 1.0276 29 1 -0.3632 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 4.2329 1.3458 -0.7331 32 1 4.1198 0.8554 0.9851 33 1 4.4753 -1.3042 0.0965 34 1 3.8270 -0.8474 -1.5142 35 1 2.9947 -3.6196 0.7847 36 1 1.7965 -3.6366 3.3419 37 1 3.4811 -3.0889 3.5159 38 1 4.5242 -5.8882 4.4629 39 1 2.8704 -5.3391 4.9750 40 1 4.6881 -7.5674 2.6139 41 1 4.9339 -11.9783 1.6930 42 1 1.1674 -5.7847 2.9290 43 1 2.1078 -6.5180 1.5591 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086451212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:24 Heat of formation + Delta-G solvation = -57.675702 kcal Electronic energy + Delta-G solvation = -23626.138796 eV Core-core repulsion = 20092.318529 eV Total energy + Delta-G solvation = -3533.820267 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00134 -40.51671 -39.70657 -37.34464 -36.05751 -34.98628 -33.76966 -32.65258 -30.12993 -28.06849 -27.65832 -26.43070 -25.39196 -23.81167 -22.99130 -21.74929 -20.63397 -20.05692 -19.54710 -18.66770 -17.90783 -17.23442 -16.81509 -16.56593 -16.37467 -16.09437 -15.99180 -15.24795 -15.09184 -14.74401 -14.72467 -14.62367 -14.52275 -14.02007 -13.79404 -13.57194 -13.34512 -13.25019 -13.07992 -12.99731 -12.67756 -12.39854 -12.27468 -12.15132 -11.85331 -11.61192 -11.53445 -11.20352 -11.00851 -10.92974 -10.81772 -10.07275 -9.81394 -9.27366 -8.00492 -5.34548 1.37251 1.39514 1.45207 1.52313 1.52379 1.83833 2.31063 2.50983 3.26442 3.29936 3.43409 3.53868 3.63734 3.77145 3.87062 3.92265 4.04378 4.16161 4.29743 4.30166 4.36286 4.40755 4.55229 4.72230 4.77482 4.78261 4.79632 4.92308 4.95364 5.00146 5.02547 5.11029 5.28473 5.34342 5.36166 5.50958 5.57675 5.82969 5.95251 6.24635 6.54045 7.01437 7.10287 7.21504 7.86758 8.05953 9.21061 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026761 B = 0.002831 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.048266 B = 9886.442453 C =10297.762234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.604 5.604 3 C 0.509 3.491 4 O -0.584 6.584 5 C -0.154 4.154 6 C -0.107 4.107 7 C 0.111 3.889 8 H 0.151 0.849 9 C 0.498 3.502 10 O -0.580 6.580 11 N -0.708 5.708 12 C 0.140 3.860 13 C -0.101 4.101 14 H 0.096 0.904 15 C -0.136 4.136 16 C 0.143 3.857 17 H 0.053 0.947 18 N -0.732 5.732 19 C -0.233 4.233 20 H 0.054 0.946 21 C -0.068 4.068 22 N -0.986 5.986 23 Si 0.958 3.042 24 H -0.282 1.282 25 H -0.298 1.298 26 H -0.242 1.242 27 C -0.154 4.154 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.417 0.583 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.368 0.632 41 H 0.258 0.742 42 H 0.087 0.913 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 22.382 -7.443 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.336 5.336 3 C 0.299 3.701 4 O -0.464 6.464 5 C -0.194 4.194 6 C -0.145 4.145 7 C 0.003 3.997 8 H 0.168 0.832 9 C 0.283 3.717 10 O -0.459 6.459 11 N -0.361 5.361 12 C 0.016 3.984 13 C -0.120 4.120 14 H 0.115 0.885 15 C -0.175 4.175 16 C 0.034 3.966 17 H 0.071 0.929 18 N -0.374 5.374 19 C -0.364 4.364 20 H 0.072 0.928 21 C -0.259 4.259 22 N -0.637 5.637 23 Si 0.785 3.215 24 H -0.208 1.208 25 H -0.225 1.225 26 H -0.166 1.166 27 C -0.194 4.194 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.148 0.852 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.202 0.798 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.569 23.218 -6.725 24.223 hybrid contribution 0.615 -0.559 -0.257 0.870 sum -0.954 22.659 -6.982 23.729 Atomic orbital electron populations 1.21679 0.77322 1.04337 1.01704 1.48031 1.07092 1.06519 1.71912 1.21601 0.91166 0.83800 0.73578 1.90683 1.79976 1.22982 1.52801 1.22446 0.92038 0.99312 1.05563 1.22759 0.92871 0.93447 1.05409 1.21951 0.95100 0.88657 0.93958 0.83157 1.21458 0.76370 0.81877 0.91969 1.90729 1.49797 1.61751 1.43625 1.45935 1.67129 1.12349 1.10668 1.21271 1.01000 0.92361 0.83788 1.22560 0.99066 0.91756 0.98600 0.88537 1.23369 1.01848 0.95647 0.96682 1.21380 0.91419 0.89641 0.94174 0.92865 1.42399 1.19316 1.04068 1.71646 1.19049 1.01905 0.84090 1.31341 0.92831 1.25571 1.02617 0.95548 1.02132 1.69895 1.37572 1.04732 1.51456 0.85367 0.79573 0.78961 0.77594 1.20807 1.22490 1.16592 1.23723 0.97759 0.97292 1.00648 0.93977 0.90921 0.87838 0.85716 0.88118 0.87002 0.85176 0.74538 0.92080 0.91736 0.91395 0.87984 0.79809 0.93373 0.89421 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.48 10.95 127.77 1.40 2.88 16 2 N -0.60 -10.85 2.55 -823.08 -2.10 -12.95 16 3 C 0.51 11.42 8.02 87.90 0.71 12.13 16 4 O -0.58 -18.55 17.60 -3.04 -0.05 -18.60 16 5 C -0.15 -1.99 6.86 30.67 0.21 -1.77 16 6 C -0.11 -0.66 6.71 31.73 0.21 -0.44 16 7 C 0.11 1.22 3.49 44.70 0.16 1.38 16 8 H 0.15 0.59 8.14 -2.38 -0.02 0.57 16 9 C 0.50 8.81 6.99 87.65 0.61 9.42 16 10 O -0.58 -16.33 16.57 -3.03 -0.05 -16.38 16 11 N -0.71 -10.14 5.56 -463.07 -2.57 -12.71 16 12 C 0.14 2.57 5.51 86.38 0.48 3.04 16 13 C -0.10 -2.10 3.63 -10.27 -0.04 -2.14 16 14 H 0.10 1.97 8.14 -2.39 -0.02 1.96 16 15 C -0.14 -3.33 7.38 31.12 0.23 -3.10 16 16 C 0.14 4.79 4.57 45.58 0.21 5.00 16 17 H 0.05 1.94 8.10 -2.39 -0.02 1.93 16 18 N -0.73 -31.19 5.12 -320.15 -1.64 -32.83 16 19 C -0.23 -12.67 10.45 84.03 0.88 -11.80 16 20 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 21 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 22 N -0.99 -61.67 13.97 21.65 0.30 -61.37 16 23 Si 0.96 42.62 27.74 68.60 1.90 44.52 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 26 H -0.24 -9.19 6.52 99.48 0.65 -8.54 16 27 C -0.15 -4.01 7.44 31.18 0.23 -3.78 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 1.25 7.93 -2.39 -0.02 1.23 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.11 0.44 7.89 -2.39 -0.02 0.42 16 34 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.42 3.72 8.47 -92.71 -0.79 2.94 16 36 H 0.06 1.26 7.85 -2.39 -0.02 1.24 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 40 H 0.37 14.67 5.76 -92.71 -0.53 14.13 16 41 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.09 2.03 7.90 -2.39 -0.02 2.01 16 43 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -81.87 357.14 1.18 -80.69 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -0.36 Total: 22.17 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.75 Total: 7.47 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -6.01 Total: -119.87 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.10 Total: -34.98 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.90 Total: 44.52 kcal Total: -81.87 1.18 -80.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086451212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.012 kcal (2) G-P(sol) polarization free energy of solvation -81.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds