Wall clock time and date at job start Tue Mar 31 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46763 * 124.35211 * 2 1 4 4 C 1.54478 * 105.47333 * 197.04098 * 3 2 1 5 5 H 1.09001 * 111.00017 * 216.45500 * 4 3 2 6 6 C 1.50704 * 110.97174 * 92.70438 * 4 3 2 7 7 O 1.21284 * 119.99693 * 6.16723 * 6 4 3 8 8 N 1.34774 * 119.99893 * 186.16563 * 6 4 3 9 9 C 1.46500 * 119.99794 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47113 * 180.02562 * 9 8 6 11 11 C 1.53774 * 113.61225 * 174.99957 * 10 9 8 12 12 C 1.53781 * 87.08091 * 140.06649 * 11 10 9 13 13 N 1.46498 * 113.61376 * 89.11579 * 12 11 10 14 14 C 1.36943 * 119.99727 * 156.53173 * 13 12 11 15 15 H 1.07998 * 120.00392 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99586 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00460 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99694 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47297 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00129 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00122 * 18 16 14 22 22 C 1.53780 * 87.17069 * 334.52544 * 12 11 10 23 23 C 1.54626 * 101.76643 * 334.58502 * 4 3 2 24 24 C 1.34419 * 124.34637 * 180.02562 * 2 1 3 25 25 O 1.21284 * 124.94422 * 359.53958 * 24 2 1 26 26 H 1.08991 * 109.47505 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47080 * 299.94865 * 1 2 3 28 28 H 1.09004 * 109.47302 * 59.94531 * 1 2 3 29 29 H 1.08997 * 110.24409 * 78.04105 * 3 2 1 30 30 H 1.08996 * 110.24873 * 316.03888 * 3 2 1 31 31 H 0.97000 * 120.00100 * 0.02562 * 8 6 4 32 32 H 1.08998 * 109.47217 * 60.00274 * 9 8 6 33 33 H 1.09000 * 109.46965 * 300.00366 * 9 8 6 34 34 H 1.08994 * 112.84869 * 43.80717 * 10 9 8 35 35 H 1.09002 * 113.61602 * 25.51796 * 11 10 9 36 36 H 1.09005 * 113.61537 * 254.61412 * 11 10 9 37 37 H 1.09001 * 113.61363 * 219.93399 * 12 11 10 38 38 H 0.96998 * 120.00095 * 336.52633 * 13 12 11 39 39 H 0.97001 * 119.99952 * 359.97438 * 17 16 14 40 40 H 1.09001 * 113.61466 * 140.02553 * 22 12 11 41 41 H 1.09003 * 113.61382 * 270.92509 * 22 12 11 42 42 H 1.09002 * 110.48870 * 143.47665 * 23 4 3 43 43 H 1.09007 * 110.48553 * 266.12327 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7008 0.7487 -0.4363 5 1 4.4759 1.3007 0.0955 6 6 3.8744 0.8819 -1.9274 7 8 3.0100 1.4110 -2.5936 8 7 4.9901 0.4130 -2.5204 9 6 5.1586 0.5420 -3.9700 10 6 6.5001 -0.0665 -4.3837 11 6 6.7218 -0.0920 -5.9051 12 6 8.1817 0.2981 -5.6197 13 7 9.0679 -0.8512 -5.4202 14 6 10.4144 -0.7228 -5.6344 15 1 10.8229 0.2256 -5.9508 16 6 11.2542 -1.8117 -5.4448 17 7 10.7564 -2.9676 -5.0597 18 14 13.0908 -1.6367 -5.7376 19 1 13.7610 -2.9341 -5.4671 20 1 13.6401 -0.5977 -4.8299 21 1 13.3316 -1.2392 -7.1480 22 6 7.6783 0.9229 -4.3079 23 6 3.6897 -0.7379 -0.0111 24 6 2.2234 -1.1098 -0.0005 25 8 1.7945 -2.2443 0.0070 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5130 0.8905 28 1 -0.3634 0.5147 -0.8895 29 1 2.3310 1.6426 1.0004 30 1 1.8983 1.9384 -0.7099 31 1 5.6812 -0.0105 -1.9876 32 1 5.1369 1.5962 -4.2459 33 1 4.3497 0.0168 -4.4779 34 1 6.6997 -1.0213 -3.8973 35 1 6.1618 0.6745 -6.4409 36 1 6.6128 -1.0830 -6.3458 37 1 8.5847 1.0262 -6.3237 38 1 8.7010 -1.7030 -5.1363 39 1 9.8026 -3.0585 -4.9080 40 1 8.3410 0.7508 -3.4598 41 1 7.3793 1.9664 -4.4077 42 1 4.2323 -1.3459 -0.7351 43 1 4.1197 -0.8533 0.9839 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091058994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:26 Heat of formation + Delta-G solvation = -64.147175 kcal Electronic energy + Delta-G solvation = -23527.057780 eV Core-core repulsion = 19992.956889 eV Total energy + Delta-G solvation = -3534.100891 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.96709 -40.58516 -39.80021 -37.39534 -36.23631 -35.23302 -33.93511 -31.83663 -29.14823 -28.62740 -27.51426 -26.53136 -25.61094 -24.30087 -23.02949 -21.30901 -20.65574 -20.08508 -19.45056 -18.63458 -17.85012 -17.17122 -16.93607 -16.76659 -16.49849 -16.28290 -15.94953 -15.48641 -15.18712 -14.93609 -14.78954 -14.63034 -14.54560 -13.73385 -13.53521 -13.41783 -13.30680 -13.16374 -12.98380 -12.87253 -12.79032 -12.52446 -12.49178 -11.95068 -11.78200 -11.58639 -11.35701 -11.09138 -11.01667 -10.90048 -10.74534 -10.11760 -9.78840 -9.11102 -8.39176 -5.33499 1.43021 1.52423 1.59691 1.69085 1.85526 2.00780 2.13825 2.71423 3.21374 3.29445 3.38633 3.56618 3.60365 3.69499 3.78787 3.89611 3.99883 4.23070 4.30513 4.31587 4.33586 4.44115 4.62548 4.63963 4.66008 4.71004 4.76564 4.80186 4.84793 4.85216 4.90555 5.01865 5.20802 5.26443 5.44208 5.46310 5.51210 5.66691 6.01408 6.47925 6.49463 7.02688 7.09852 7.15601 8.00400 8.11024 9.12519 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026226 B = 0.002684 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.380701 B =10429.789882 C =10934.347789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.622 5.622 3 C 0.114 3.886 4 C -0.114 4.114 5 H 0.174 0.826 6 C 0.513 3.487 7 O -0.578 6.578 8 N -0.716 5.716 9 C 0.141 3.859 10 C -0.102 4.102 11 C -0.137 4.137 12 C 0.146 3.854 13 N -0.732 5.732 14 C -0.331 4.331 15 H 0.067 0.933 16 C -0.105 4.105 17 N -0.976 5.976 18 Si 1.127 2.873 19 H -0.295 1.295 20 H -0.276 1.276 21 H -0.279 1.279 22 C -0.148 4.148 23 C -0.140 4.140 24 C 0.499 3.501 25 O -0.587 6.587 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.414 0.586 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.361 0.639 39 H 0.244 0.756 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.743 12.951 12.793 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.355 5.355 3 C -0.008 4.008 4 C -0.135 4.135 5 H 0.191 0.809 6 C 0.300 3.700 7 O -0.457 6.457 8 N -0.367 5.367 9 C 0.017 3.983 10 C -0.120 4.120 11 C -0.176 4.176 12 C 0.036 3.964 13 N -0.373 5.373 14 C -0.463 4.463 15 H 0.085 0.915 16 C -0.296 4.296 17 N -0.624 5.624 18 Si 0.952 3.048 19 H -0.221 1.221 20 H -0.202 1.202 21 H -0.205 1.205 22 C -0.189 4.189 23 C -0.180 4.180 24 C 0.288 3.712 25 O -0.469 6.469 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.107 0.893 31 H 0.250 0.750 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.193 0.807 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.107 12.190 12.238 23.618 hybrid contribution -1.436 -0.100 -0.069 1.441 sum -17.543 12.090 12.169 24.536 Atomic orbital electron populations 1.21680 0.77329 1.03073 1.03220 1.48343 1.07522 1.07669 1.71940 1.22251 0.87757 0.86662 1.04165 1.22430 1.01424 0.97971 0.91722 0.80911 1.20888 0.80993 0.77137 0.90973 1.90692 1.42888 1.45417 1.66752 1.45983 1.21190 1.60539 1.09004 1.21253 0.95966 1.00815 0.80242 1.22526 0.93455 0.99121 0.96928 1.23360 0.96824 1.01992 0.95445 1.21333 0.89617 0.89503 0.95922 1.42313 1.03949 1.09173 1.81837 1.20412 0.85532 0.98476 1.41862 0.91465 1.27180 1.09782 0.92195 1.00404 1.71002 1.13485 1.25899 1.51988 0.82634 0.70067 0.75331 0.76791 1.22071 1.20203 1.20512 1.23716 0.96811 0.98656 0.99692 1.22439 0.92977 0.95194 1.07381 1.21539 0.91039 0.84108 0.74540 1.90704 1.79743 1.23172 1.53242 0.91772 0.89145 0.91468 0.86188 0.89330 0.74983 0.90962 0.92574 0.90183 0.87531 0.92731 0.92655 0.80711 0.94548 0.93131 0.88686 0.87987 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.33 11.14 127.77 1.42 2.75 16 2 N -0.62 -11.02 3.33 -842.92 -2.81 -13.83 16 3 C 0.11 1.28 6.73 86.83 0.58 1.87 16 4 C -0.11 -1.23 3.54 -10.48 -0.04 -1.27 16 5 H 0.17 0.42 8.14 -2.39 -0.02 0.40 16 6 C 0.51 10.11 7.16 87.66 0.63 10.73 16 7 O -0.58 -16.04 15.51 -3.04 -0.05 -16.09 16 8 N -0.72 -13.62 5.28 -463.05 -2.45 -16.06 16 9 C 0.14 3.22 5.51 86.38 0.48 3.70 16 10 C -0.10 -2.70 3.64 -10.18 -0.04 -2.74 16 11 C -0.14 -4.07 7.38 31.12 0.23 -3.84 16 12 C 0.15 5.47 4.55 45.52 0.21 5.67 16 13 N -0.73 -35.69 5.31 -320.45 -1.70 -37.39 16 14 C -0.33 -18.24 9.97 84.03 0.84 -17.40 16 15 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 16 C -0.10 -5.97 5.50 84.86 0.47 -5.51 16 17 N -0.98 -60.30 13.70 21.65 0.30 -60.01 16 18 Si 1.13 51.03 29.92 68.60 2.05 53.08 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 22 C -0.15 -4.42 7.45 31.21 0.23 -4.19 16 23 C -0.14 -1.87 6.39 30.59 0.20 -1.67 16 24 C 0.50 11.34 8.02 87.90 0.71 12.05 16 25 O -0.59 -19.21 17.35 -3.04 -0.05 -19.26 16 26 H 0.06 1.20 7.53 -2.39 -0.02 1.18 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 1.26 6.94 -2.39 -0.02 1.25 16 31 H 0.41 6.28 8.29 -92.71 -0.77 5.52 16 32 H 0.07 1.64 7.86 -2.39 -0.02 1.63 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.11 2.61 8.10 -2.39 -0.02 2.59 16 36 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.06 2.13 8.11 -2.39 -0.02 2.11 16 38 H 0.36 18.37 6.73 -92.71 -0.62 17.74 16 39 H 0.24 14.98 6.77 -92.71 -0.63 14.35 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.09 2.38 7.91 -2.39 -0.02 2.36 16 42 H 0.10 1.54 7.51 -2.39 -0.02 1.52 16 43 H 0.15 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -80.66 355.57 0.98 -79.68 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.23 Total: 29.73 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.91 Total: 0.15 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -6.66 Total: -127.29 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.10 Total: -35.35 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -80.66 0.98 -79.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091058994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.532 kcal (2) G-P(sol) polarization free energy of solvation -80.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds