Wall clock time and date at job start Tue Mar 31 2020 03:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46762 * 124.35121 * 2 1 4 4 C 1.54481 * 105.47718 * 196.99676 * 3 2 1 5 5 C 1.54633 * 101.76155 * 334.58267 * 4 3 2 6 6 H 1.09004 * 110.59604 * 266.06222 * 5 4 3 7 7 C 1.50701 * 110.48313 * 143.47734 * 5 4 3 8 8 O 1.21280 * 120.00072 * 3.77489 * 7 5 4 9 9 N 1.34768 * 119.99720 * 183.76934 * 7 5 4 10 10 C 1.46504 * 120.00242 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.47310 * 180.02562 * 10 9 7 12 12 C 1.53790 * 113.61281 * 185.00081 * 11 10 9 13 13 C 1.53780 * 87.08032 * 220.01697 * 12 11 10 14 14 N 1.46499 * 113.61180 * 139.97918 * 13 12 11 15 15 C 1.36932 * 119.99549 * 156.53024 * 14 13 12 16 16 H 1.08003 * 120.00354 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00011 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00154 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99635 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99668 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99848 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99841 * 19 17 15 23 23 C 1.53785 * 87.17414 * 25.39089 * 13 12 11 24 24 C 1.34417 * 124.35077 * 179.97438 * 2 1 3 25 25 O 1.21279 * 124.94337 * 359.57710 * 24 2 1 26 26 H 1.09003 * 109.46730 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46940 * 300.04566 * 1 2 3 28 28 H 1.08998 * 109.46956 * 60.04946 * 1 2 3 29 29 H 1.09003 * 110.24229 * 315.99704 * 3 2 1 30 30 H 1.09001 * 110.24576 * 77.90423 * 3 2 1 31 31 H 1.08998 * 110.96824 * 216.46492 * 4 3 2 32 32 H 1.08996 * 110.97103 * 92.70423 * 4 3 2 33 33 H 0.96999 * 120.00303 * 0.02562 * 9 7 5 34 34 H 1.09004 * 109.46882 * 59.99728 * 10 9 7 35 35 H 1.09003 * 109.46759 * 300.00243 * 10 9 7 36 36 H 1.08996 * 112.90905 * 316.24555 * 11 10 9 37 37 H 1.08996 * 113.61028 * 105.46332 * 12 11 10 38 38 H 1.08999 * 113.61203 * 334.56750 * 12 11 10 39 39 H 1.08997 * 113.61166 * 270.80120 * 13 12 11 40 40 H 0.96993 * 120.00302 * 336.52988 * 14 13 12 41 41 H 0.96998 * 119.99442 * 179.97438 * 18 17 15 42 42 H 1.08995 * 113.61712 * 89.15338 * 23 13 12 43 43 H 1.08996 * 113.61627 * 220.06619 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7012 0.7486 -0.4352 5 6 3.6898 -0.7378 -0.0093 6 1 4.1198 -0.8550 0.9855 7 6 4.4407 -1.5787 -1.0094 8 8 5.0045 -1.0503 -1.9441 9 7 4.4856 -2.9179 -0.8649 10 6 5.2160 -3.7354 -1.8368 11 6 5.1101 -5.2105 -1.4445 12 6 5.9461 -6.1460 -2.3339 13 6 4.7661 -7.1302 -2.2722 14 7 4.4941 -7.8008 -3.5461 15 6 3.8407 -9.0040 -3.5604 16 1 3.5254 -9.4585 -2.6328 17 6 3.5825 -9.6393 -4.7674 18 7 2.9539 -10.7956 -4.7813 19 14 4.1271 -8.8528 -6.3719 20 1 3.0442 -7.9763 -6.8862 21 1 4.4206 -9.9138 -7.3687 22 1 5.3495 -8.0431 -6.1365 23 6 3.8631 -5.9129 -2.0119 24 6 2.2235 -1.1097 0.0005 25 8 1.7947 -2.2442 0.0083 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5145 0.8896 28 1 -0.3633 0.5131 -0.8904 29 1 1.8986 1.9381 -0.7105 30 1 2.3290 1.6440 1.0000 31 1 4.4754 1.3011 0.0973 32 1 3.8274 0.8445 -1.5136 33 1 4.0344 -3.3406 -0.1175 34 1 6.2642 -3.4364 -1.8483 35 1 4.7863 -3.5917 -2.8282 36 1 5.2559 -5.3772 -0.3773 37 1 6.8496 -6.5166 -1.8497 38 1 6.1319 -5.7490 -3.3318 39 1 4.8185 -7.8226 -1.4321 40 1 4.7769 -7.3925 -4.3792 41 1 2.7732 -11.2392 -5.6248 42 1 3.4785 -5.4520 -2.9216 43 1 3.0876 -6.0956 -1.2681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091190986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:45 Heat of formation + Delta-G solvation = -33.727651 kcal Electronic energy + Delta-G solvation = -23611.272486 eV Core-core repulsion = 20078.490685 eV Total energy + Delta-G solvation = -3532.781802 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25848 -39.38683 -38.43527 -36.82249 -34.73900 -33.38945 -33.13061 -30.73503 -28.93567 -27.33257 -26.90155 -25.13534 -23.77340 -22.63780 -21.00167 -20.92340 -19.91608 -19.17366 -17.74490 -17.38569 -17.25918 -16.57592 -16.07483 -15.65528 -15.06108 -14.90057 -14.52841 -14.26250 -14.12530 -13.89766 -13.69867 -13.20613 -13.13165 -12.86556 -12.66655 -12.54264 -12.23647 -12.13814 -11.91356 -11.58359 -11.54406 -11.48979 -10.87261 -10.45333 -10.42913 -10.20070 -10.10470 -9.92651 -9.75613 -9.50824 -9.18269 -9.05018 -8.85017 -7.22869 -5.75057 -3.10123 1.99725 2.36974 2.68214 3.08973 3.40264 3.43620 3.47776 3.79074 3.96339 4.40279 4.47515 4.61454 4.72018 4.81969 4.87255 4.93264 4.93718 5.03695 5.08422 5.17911 5.34406 5.36810 5.44343 5.47505 5.63674 5.69185 5.76302 5.85737 5.88496 6.01055 6.22032 6.23121 6.29519 6.42504 6.59230 6.60731 6.74993 7.04296 7.41134 7.70572 8.01977 8.06319 8.44984 9.23025 9.95816 10.15918 11.43345 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.002958 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.109163 B = 9464.337045 C = 9914.842709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.622 5.622 3 C 0.101 3.899 4 C -0.116 4.116 5 C -0.150 4.150 6 H 0.135 0.865 7 C 0.528 3.472 8 O -0.539 6.539 9 N -0.710 5.710 10 C 0.132 3.868 11 C -0.126 4.126 12 C -0.144 4.144 13 C 0.171 3.829 14 N -0.738 5.738 15 C -0.246 4.246 16 H 0.091 0.909 17 C 0.004 3.996 18 N -0.934 5.934 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.276 1.276 23 C -0.158 4.158 24 C 0.525 3.475 25 O -0.512 6.512 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.408 0.592 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.362 0.638 41 H 0.259 0.741 42 H 0.076 0.924 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 27.889 13.946 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.357 5.357 3 C -0.022 4.022 4 C -0.154 4.154 5 C -0.175 4.175 6 H 0.153 0.847 7 C 0.312 3.688 8 O -0.417 6.417 9 N -0.361 5.361 10 C 0.009 3.991 11 C -0.146 4.146 12 C -0.184 4.184 13 C 0.060 3.940 14 N -0.378 5.378 15 C -0.376 4.376 16 H 0.109 0.891 17 C -0.192 4.192 18 N -0.582 5.582 19 Si 0.714 3.286 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.199 4.199 24 C 0.310 3.690 25 O -0.387 6.387 26 H 0.104 0.896 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.243 0.757 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.195 0.805 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.674 27.370 13.303 30.439 hybrid contribution -0.010 0.413 -0.773 0.876 sum 0.664 27.783 12.531 30.485 Atomic orbital electron populations 1.21615 0.77419 1.04203 1.01654 1.48066 1.06791 1.07195 1.73625 1.22184 0.90451 0.87421 1.02165 1.22595 0.96270 0.91793 1.04727 1.22183 0.94971 0.97920 1.02396 0.84701 1.19698 0.80699 0.82783 0.85619 1.90707 1.46200 1.72424 1.32350 1.46017 1.53723 1.06084 1.30242 1.21461 0.96025 0.89459 0.92189 1.22664 1.00213 0.91791 0.99905 1.23444 0.98407 0.97235 0.99274 1.21521 0.91839 0.90626 0.90028 1.42759 1.69241 1.23408 1.02346 1.19148 1.28557 0.94952 0.94938 0.89131 1.24693 1.00508 0.96741 0.97264 1.69706 1.46379 1.16487 1.25609 0.86551 0.78570 0.78578 0.84866 1.21070 1.21720 1.20262 1.23916 0.96229 0.99391 1.00404 1.20349 0.87971 0.84802 0.75831 1.90799 1.77910 1.20573 1.49389 0.89589 0.91833 0.91821 0.89857 0.90651 0.88442 0.88046 0.75675 0.91557 0.91343 0.89067 0.91620 0.90359 0.89902 0.80479 0.93070 0.90535 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 11.14 59.85 0.67 1.27 16 2 N -0.62 -5.02 3.33 -180.29 -0.60 -5.62 16 3 C 0.10 0.49 7.35 -3.12 -0.02 0.47 16 4 C -0.12 -0.73 6.45 -25.10 -0.16 -0.89 16 5 C -0.15 -1.30 3.33 -91.78 -0.31 -1.60 16 6 H 0.14 0.80 8.14 -51.93 -0.42 0.37 16 7 C 0.53 6.55 7.16 -10.99 -0.08 6.47 16 8 O -0.54 -8.30 15.52 5.56 0.09 -8.22 16 9 N -0.71 -8.74 5.26 -60.29 -0.32 -9.05 16 10 C 0.13 1.76 5.51 -4.04 -0.02 1.74 16 11 C -0.13 -1.73 3.75 -89.71 -0.34 -2.06 16 12 C -0.14 -2.23 7.39 -25.91 -0.19 -2.42 16 13 C 0.17 3.31 4.47 -67.12 -0.30 3.01 16 14 N -0.74 -17.86 5.21 -52.64 -0.27 -18.13 16 15 C -0.25 -7.08 10.45 -15.06 -0.16 -7.23 16 16 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 17 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 18 N -0.93 -29.84 13.97 55.49 0.78 -29.06 16 19 Si 0.88 22.62 27.73 -169.99 -4.71 17.91 16 20 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 23 C -0.16 -2.73 7.45 -25.82 -0.19 -2.92 16 24 C 0.52 5.66 7.44 -10.86 -0.08 5.58 16 25 O -0.51 -7.39 16.17 5.56 0.09 -7.30 16 26 H 0.09 0.70 7.53 -51.93 -0.39 0.31 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.85 7.06 -51.93 -0.37 0.48 16 33 H 0.41 4.63 7.68 -40.82 -0.31 4.32 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 39 H 0.08 1.62 8.11 -51.93 -0.42 1.19 16 40 H 0.36 8.64 5.77 -40.82 -0.24 8.40 16 41 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 42 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -36.22 353.08 -7.70 -43.92 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.78 Total: 8.82 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.28 Total: 1.42 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.42 Total: -61.86 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.18 Total: -15.52 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.91 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.22 -7.70 -43.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091190986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.189 kcal (2) G-P(sol) polarization free energy of solvation -36.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds