Wall clock time and date at job start Tue Mar 31 2020 03:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46762 * 124.35121 * 2 1 4 4 C 1.54481 * 105.47718 * 196.99676 * 3 2 1 5 5 C 1.54633 * 101.76155 * 334.58267 * 4 3 2 6 6 H 1.09004 * 110.59604 * 266.06222 * 5 4 3 7 7 C 1.50701 * 110.48313 * 143.47734 * 5 4 3 8 8 O 1.21280 * 120.00072 * 3.77489 * 7 5 4 9 9 N 1.34768 * 119.99720 * 183.76934 * 7 5 4 10 10 C 1.46504 * 120.00242 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.47310 * 180.02562 * 10 9 7 12 12 C 1.53790 * 113.61281 * 185.00081 * 11 10 9 13 13 C 1.53780 * 87.08032 * 220.01697 * 12 11 10 14 14 N 1.46499 * 113.61180 * 139.97918 * 13 12 11 15 15 C 1.36932 * 119.99549 * 156.53024 * 14 13 12 16 16 H 1.08003 * 120.00354 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00011 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00154 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99635 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99668 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99848 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99841 * 19 17 15 23 23 C 1.53785 * 87.17414 * 25.39089 * 13 12 11 24 24 C 1.34417 * 124.35077 * 179.97438 * 2 1 3 25 25 O 1.21279 * 124.94337 * 359.57710 * 24 2 1 26 26 H 1.09003 * 109.46730 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46940 * 300.04566 * 1 2 3 28 28 H 1.08998 * 109.46956 * 60.04946 * 1 2 3 29 29 H 1.09003 * 110.24229 * 315.99704 * 3 2 1 30 30 H 1.09001 * 110.24576 * 77.90423 * 3 2 1 31 31 H 1.08998 * 110.96824 * 216.46492 * 4 3 2 32 32 H 1.08996 * 110.97103 * 92.70423 * 4 3 2 33 33 H 0.96999 * 120.00303 * 0.02562 * 9 7 5 34 34 H 1.09004 * 109.46882 * 59.99728 * 10 9 7 35 35 H 1.09003 * 109.46759 * 300.00243 * 10 9 7 36 36 H 1.08996 * 112.90905 * 316.24555 * 11 10 9 37 37 H 1.08996 * 113.61028 * 105.46332 * 12 11 10 38 38 H 1.08999 * 113.61203 * 334.56750 * 12 11 10 39 39 H 1.08997 * 113.61166 * 270.80120 * 13 12 11 40 40 H 0.96993 * 120.00302 * 336.52988 * 14 13 12 41 41 H 0.96998 * 119.99442 * 179.97438 * 18 17 15 42 42 H 1.08995 * 113.61712 * 89.15338 * 23 13 12 43 43 H 1.08996 * 113.61627 * 220.06619 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7012 0.7486 -0.4352 5 6 3.6898 -0.7378 -0.0093 6 1 4.1198 -0.8550 0.9855 7 6 4.4407 -1.5787 -1.0094 8 8 5.0045 -1.0503 -1.9441 9 7 4.4856 -2.9179 -0.8649 10 6 5.2160 -3.7354 -1.8368 11 6 5.1101 -5.2105 -1.4445 12 6 5.9461 -6.1460 -2.3339 13 6 4.7661 -7.1302 -2.2722 14 7 4.4941 -7.8008 -3.5461 15 6 3.8407 -9.0040 -3.5604 16 1 3.5254 -9.4585 -2.6328 17 6 3.5825 -9.6393 -4.7674 18 7 2.9539 -10.7956 -4.7813 19 14 4.1271 -8.8528 -6.3719 20 1 3.0442 -7.9763 -6.8862 21 1 4.4206 -9.9138 -7.3687 22 1 5.3495 -8.0431 -6.1365 23 6 3.8631 -5.9129 -2.0119 24 6 2.2235 -1.1097 0.0005 25 8 1.7947 -2.2442 0.0083 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5145 0.8896 28 1 -0.3633 0.5131 -0.8904 29 1 1.8986 1.9381 -0.7105 30 1 2.3290 1.6440 1.0000 31 1 4.4754 1.3011 0.0973 32 1 3.8274 0.8445 -1.5136 33 1 4.0344 -3.3406 -0.1175 34 1 6.2642 -3.4364 -1.8483 35 1 4.7863 -3.5917 -2.8282 36 1 5.2559 -5.3772 -0.3773 37 1 6.8496 -6.5166 -1.8497 38 1 6.1319 -5.7490 -3.3318 39 1 4.8185 -7.8226 -1.4321 40 1 4.7769 -7.3925 -4.3792 41 1 2.7732 -11.2392 -5.6248 42 1 3.4785 -5.4520 -2.9216 43 1 3.0876 -6.0956 -1.2681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091190986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:43 Heat of formation + Delta-G solvation = -61.140824 kcal Electronic energy + Delta-G solvation = -23612.461211 eV Core-core repulsion = 20078.490685 eV Total energy + Delta-G solvation = -3533.970526 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.01653 -40.47629 -39.66469 -37.57920 -36.12989 -35.02981 -33.86676 -32.76046 -29.80333 -28.20047 -27.66429 -26.50772 -25.58325 -23.46571 -22.34236 -21.82832 -21.01266 -20.41196 -19.37828 -18.53476 -17.93565 -17.37800 -17.20329 -16.68253 -16.37449 -16.16676 -15.77071 -15.68829 -14.92404 -14.78297 -14.78182 -14.64980 -14.18063 -13.98518 -13.76143 -13.43957 -13.29383 -13.22714 -13.10664 -13.06713 -12.70602 -12.69120 -12.17433 -12.03629 -11.94236 -11.75588 -11.62668 -11.22161 -11.06394 -10.93565 -10.85679 -10.09904 -9.76661 -9.29262 -8.04738 -5.37336 1.18112 1.35332 1.38615 1.45735 1.54520 2.02196 2.22754 2.46184 3.18328 3.25303 3.33897 3.56136 3.65993 3.74349 3.89044 3.95928 4.05603 4.15242 4.25552 4.34035 4.35947 4.41860 4.52483 4.63569 4.69679 4.74148 4.85463 4.91261 4.94132 4.98754 5.00118 5.14778 5.18938 5.30392 5.40976 5.47147 5.62245 5.75937 5.96439 6.21267 6.45741 6.97372 7.05857 7.12219 7.83725 8.02193 9.17016 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.002958 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.109163 B = 9464.337045 C = 9914.842709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.621 5.621 3 C 0.101 3.899 4 C -0.111 4.111 5 C -0.143 4.143 6 H 0.167 0.833 7 C 0.523 3.477 8 O -0.573 6.573 9 N -0.709 5.709 10 C 0.137 3.863 11 C -0.099 4.099 12 C -0.129 4.129 13 C 0.147 3.853 14 N -0.744 5.744 15 C -0.233 4.233 16 H 0.058 0.942 17 C -0.066 4.066 18 N -0.985 5.985 19 Si 0.954 3.046 20 H -0.282 1.282 21 H -0.293 1.293 22 H -0.250 1.250 23 C -0.157 4.157 24 C 0.512 3.488 25 O -0.562 6.562 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.413 0.587 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.365 0.635 41 H 0.258 0.742 42 H 0.060 0.940 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 31.390 15.001 34.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.354 5.354 3 C -0.021 4.021 4 C -0.149 4.149 5 C -0.167 4.167 6 H 0.185 0.815 7 C 0.308 3.692 8 O -0.453 6.453 9 N -0.360 5.360 10 C 0.013 3.987 11 C -0.118 4.118 12 C -0.169 4.169 13 C 0.038 3.962 14 N -0.385 5.385 15 C -0.364 4.364 16 H 0.076 0.924 17 C -0.258 4.258 18 N -0.635 5.635 19 Si 0.782 3.218 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.175 1.175 23 C -0.198 4.198 24 C 0.298 3.702 25 O -0.441 6.441 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.146 0.854 32 H 0.096 0.904 33 H 0.250 0.750 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.199 0.801 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.048 30.966 14.414 34.218 hybrid contribution -0.503 -0.630 -0.987 1.274 sum 1.546 30.337 13.426 33.211 Atomic orbital electron populations 1.21744 0.76762 1.03252 1.03604 1.48306 1.07564 1.07634 1.71937 1.22449 0.88895 0.86269 1.04437 1.22651 0.98212 0.90377 1.03670 1.22251 0.93130 0.98472 1.02865 0.81546 1.20327 0.80257 0.82802 0.85782 1.90690 1.47768 1.72982 1.33876 1.46029 1.53513 1.06348 1.30069 1.21298 0.96634 0.89270 0.91493 1.22510 0.96751 0.91570 1.00925 1.23308 0.97812 0.95700 1.00052 1.21924 0.95022 0.91266 0.87981 1.42781 1.69140 1.22257 1.04329 1.19135 1.27510 0.96091 0.93678 0.92414 1.25524 1.01490 0.97536 1.01217 1.69885 1.48688 1.18530 1.26430 0.85414 0.79026 0.77669 0.79725 1.20890 1.21997 1.17487 1.23770 0.97300 0.98788 0.99946 1.20760 0.89128 0.84739 0.75555 1.90766 1.78854 1.22492 1.51974 0.92011 0.89208 0.90498 0.88231 0.87517 0.85446 0.90420 0.75049 0.90375 0.93497 0.86449 0.89401 0.90293 0.90437 0.80140 0.93344 0.92159 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 11.14 127.77 1.42 2.42 16 2 N -0.62 -8.75 3.33 -842.90 -2.81 -11.56 16 3 C 0.10 0.63 7.35 86.83 0.64 1.27 16 4 C -0.11 -1.08 6.45 31.65 0.20 -0.87 16 5 C -0.14 -2.16 3.33 -11.54 -0.04 -2.20 16 6 H 0.17 1.40 8.14 -2.38 -0.02 1.38 16 7 C 0.52 12.31 7.16 87.66 0.63 12.93 16 8 O -0.57 -17.19 15.52 -3.03 -0.05 -17.23 16 9 N -0.71 -16.54 5.26 -463.06 -2.43 -18.97 16 10 C 0.14 3.44 5.51 86.38 0.48 3.92 16 11 C -0.10 -2.49 3.75 -10.20 -0.04 -2.53 16 12 C -0.13 -3.71 7.39 31.12 0.23 -3.48 16 13 C 0.15 5.60 4.47 45.52 0.20 5.81 16 14 N -0.74 -35.93 5.21 -320.44 -1.67 -37.60 16 15 C -0.23 -13.72 10.45 84.04 0.88 -12.84 16 16 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 17 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 18 N -0.98 -64.87 13.97 21.65 0.30 -64.57 16 19 Si 0.95 47.15 27.73 68.60 1.90 49.06 16 20 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 21 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 22 H -0.25 -11.15 6.52 99.48 0.65 -10.50 16 23 C -0.16 -5.37 7.45 31.18 0.23 -5.14 16 24 C 0.51 10.49 7.44 87.90 0.65 11.14 16 25 O -0.56 -16.36 16.17 -3.03 -0.05 -16.41 16 26 H 0.06 1.02 7.53 -2.39 -0.02 1.00 16 27 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 1.18 7.06 -2.39 -0.02 1.16 16 33 H 0.41 8.85 7.68 -92.71 -0.71 8.13 16 34 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.05 1.40 7.85 -2.39 -0.02 1.38 16 36 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.08 2.29 8.07 -2.39 -0.02 2.28 16 39 H 0.08 3.02 8.11 -2.39 -0.02 3.00 16 40 H 0.37 17.01 5.77 -92.71 -0.53 16.47 16 41 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 42 H 0.06 2.26 7.90 -2.39 -0.02 2.24 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -82.28 353.08 0.87 -81.41 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.28 Total: 29.03 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 5.96 Total: 6.85 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -6.61 Total: -132.70 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.10 Total: -33.65 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.90 Total: 49.06 kcal Total: -82.28 0.87 -81.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091190986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.268 kcal (2) G-P(sol) polarization free energy of solvation -82.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds