Wall clock time and date at job start Tue Mar 31 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00295 * 2 1 4 4 N 1.34782 * 120.00057 * 180.02562 * 2 1 3 5 5 C 1.47211 * 126.70028 * 359.68657 * 4 2 1 6 6 C 1.53759 * 106.40400 * 148.94141 * 5 4 2 7 7 H 1.08997 * 112.86820 * 141.43034 * 6 5 4 8 8 C 1.54306 * 109.07942 * 266.66822 * 6 5 4 9 9 N 1.48524 * 104.68958 * 136.30107 * 8 6 5 10 10 C 1.46907 * 110.99954 * 200.77238 * 9 8 6 11 11 C 1.50701 * 109.46913 * 290.12622 * 10 9 8 12 12 O 1.21298 * 120.00222 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00375 * 179.97438 * 11 10 9 14 14 C 1.37101 * 120.00601 * 179.97438 * 13 11 10 15 15 H 1.07996 * 119.99517 * 359.97438 * 14 13 11 16 16 C 1.38953 * 120.00068 * 180.02562 * 14 13 11 17 17 N 1.31402 * 119.99632 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99886 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46873 * 90.00104 * 18 16 14 20 20 H 1.48498 * 109.46989 * 209.99844 * 18 16 14 21 21 H 1.48496 * 109.47245 * 330.00032 * 18 16 14 22 22 C 1.50364 * 104.82452 * 320.80596 * 9 8 6 23 23 C 1.54301 * 103.80704 * 38.61431 * 22 9 8 24 24 C 1.53004 * 112.04773 * 99.65890 * 23 22 9 25 25 C 1.47206 * 126.70566 * 179.97438 * 4 2 1 26 26 H 1.08996 * 109.47253 * 269.99534 * 1 2 3 27 27 H 1.08994 * 109.46952 * 29.99616 * 1 2 3 28 28 H 1.09001 * 109.47024 * 149.99538 * 1 2 3 29 29 H 1.09001 * 110.06551 * 268.17493 * 5 4 2 30 30 H 1.08999 * 110.06670 * 29.70129 * 5 4 2 31 31 H 1.09001 * 110.38907 * 255.09992 * 8 6 5 32 32 H 1.08996 * 110.39277 * 17.49796 * 8 6 5 33 33 H 1.09002 * 109.46936 * 50.12360 * 10 9 8 34 34 H 1.09001 * 109.47230 * 170.12777 * 10 9 8 35 35 H 0.97006 * 119.99808 * 0.02562 * 13 11 10 36 36 H 0.97002 * 119.99829 * 180.02562 * 17 16 14 37 37 H 1.09002 * 110.29525 * 280.35775 * 22 9 8 38 38 H 1.08995 * 111.34065 * 157.38544 * 22 9 8 39 39 H 1.08999 * 109.47597 * 181.97424 * 24 23 22 40 40 H 1.08998 * 109.47404 * 301.98295 * 24 23 22 41 41 H 1.08998 * 109.46555 * 61.97367 * 24 23 22 42 42 H 1.08999 * 110.06592 * 330.29525 * 25 4 2 43 43 H 1.08999 * 110.06909 * 91.76794 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5986 -2.5193 0.0053 6 6 2.5838 -3.4196 -0.7583 7 1 2.6826 -4.4106 -0.3153 8 6 2.1603 -3.4873 -2.2405 9 7 3.4276 -3.3421 -3.0013 10 6 3.1676 -2.8987 -4.3776 11 6 2.5087 -4.0135 -5.1483 12 8 2.2787 -5.0733 -4.6049 13 7 2.1748 -3.8331 -6.4415 14 6 1.5758 -4.8474 -7.1430 15 1 1.3719 -5.7912 -6.6593 16 6 1.2322 -4.6615 -8.4764 17 7 0.6585 -5.6339 -9.1487 18 14 1.5857 -3.0292 -9.3131 19 1 2.9381 -3.0694 -9.9252 20 1 0.5713 -2.7847 -10.3697 21 1 1.5288 -1.9360 -8.3097 22 6 4.2170 -2.3126 -2.2410 23 6 3.9266 -2.6443 -0.7623 24 6 5.0591 -3.4487 -0.1210 25 6 3.6429 -1.3391 -0.0011 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5139 29 1 1.4855 -2.8733 1.0300 30 1 0.6315 -2.5122 -0.4974 31 1 1.6942 -4.4481 -2.4588 32 1 1.4787 -2.6707 -2.4785 33 1 2.5095 -2.0299 -4.3612 34 1 4.1093 -2.6324 -4.8575 35 1 2.3591 -2.9857 -6.8763 36 1 0.4190 -5.5042 -10.0797 37 1 3.8625 -1.3105 -2.4821 38 1 5.2837 -2.3989 -2.4472 39 1 4.7960 -3.6894 0.9090 40 1 5.2127 -4.3707 -0.6817 41 1 5.9758 -2.8590 -0.1335 42 1 4.1179 -0.4995 -0.5085 43 1 4.0111 -1.4144 1.0220 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101100323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:10 Heat of formation + Delta-G solvation = -51.784161 kcal Electronic energy + Delta-G solvation = -24618.677385 eV Core-core repulsion = 21085.112594 eV Total energy + Delta-G solvation = -3533.564791 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99765 -39.02853 -38.15562 -35.64622 -33.96626 -33.06943 -31.69821 -31.15411 -30.19354 -27.91604 -26.34956 -26.04531 -24.73837 -22.86048 -21.24797 -19.80131 -19.34026 -19.18219 -18.22129 -17.13139 -16.36140 -16.03729 -15.58467 -15.23667 -14.96746 -14.85248 -14.61048 -14.12144 -13.77234 -13.49612 -13.21992 -13.14053 -12.88983 -12.77629 -12.64290 -12.46566 -12.39816 -12.19797 -11.93393 -11.77718 -11.49473 -11.30946 -11.08989 -10.89056 -10.76569 -10.65509 -10.59541 -10.07803 -9.98326 -9.55934 -8.95542 -8.63322 -8.19218 -8.08820 -6.31834 -3.83083 2.39980 2.75827 3.02207 3.06650 3.14713 3.73026 3.85633 4.07376 4.09749 4.32591 4.37343 4.60512 4.83286 4.84764 4.94148 4.98413 5.03832 5.10391 5.19988 5.29765 5.30055 5.41579 5.44642 5.46065 5.55759 5.58819 5.63305 5.69939 5.78164 5.81280 5.87030 5.92366 6.00811 6.05406 6.20073 6.32904 6.95842 7.06766 7.28949 7.57698 7.91991 8.13662 8.59718 8.94638 9.42050 9.83021 10.81333 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.003817 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.660684 B = 7333.574462 C = 7914.498568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.529 3.471 3 O -0.551 6.551 4 N -0.617 5.617 5 C 0.103 3.897 6 C -0.097 4.097 7 H 0.106 0.894 8 C 0.045 3.955 9 N -0.483 5.483 10 C 0.032 3.968 11 C 0.455 3.545 12 O -0.560 6.560 13 N -0.592 5.592 14 C -0.304 4.304 15 H 0.120 0.880 16 C 0.042 3.958 17 N -0.882 5.882 18 Si 0.878 3.122 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.270 1.270 22 C 0.041 3.959 23 C -0.073 4.073 24 C -0.126 4.126 25 C 0.112 3.888 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.661 9.492 18.777 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.319 3.681 3 O -0.429 6.429 4 N -0.352 5.352 5 C -0.020 4.020 6 C -0.117 4.117 7 H 0.124 0.876 8 C -0.082 4.082 9 N -0.207 5.207 10 C -0.100 4.100 11 C 0.240 3.760 12 O -0.441 6.441 13 N -0.232 5.232 14 C -0.433 4.433 15 H 0.137 0.863 16 C -0.161 4.161 17 N -0.522 5.522 18 Si 0.705 3.295 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.196 1.196 22 C -0.087 4.087 23 C -0.074 4.074 24 C -0.184 4.184 25 C -0.011 4.011 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.202 0.798 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.941 8.843 18.870 21.208 hybrid contribution -0.286 2.024 -0.985 2.269 sum 3.655 10.866 17.884 21.244 Atomic orbital electron populations 1.21906 0.91291 1.05147 1.04744 1.20500 0.90391 0.81817 0.75381 1.90722 1.70844 1.30642 1.50649 1.48583 1.07563 1.05911 1.73111 1.22233 0.97685 0.81432 1.00649 1.22830 0.93290 0.99020 0.96527 0.87551 1.23258 0.91538 1.02944 0.90501 1.65422 1.15327 1.39846 1.00086 1.22078 1.00844 0.96323 0.90774 1.19584 0.84459 0.89342 0.82600 1.90538 1.57324 1.27599 1.68647 1.42215 1.55756 1.14930 1.10274 1.19419 1.34849 0.95571 0.93430 0.86270 1.25021 0.97217 0.97619 0.96228 1.69616 1.40631 1.31728 1.10208 0.86691 0.79182 0.83447 0.80186 1.19574 1.20174 1.19593 1.23597 0.99675 0.93890 0.91512 1.22016 0.95948 0.94215 0.95262 1.21663 0.96361 1.00279 1.00068 1.22115 0.81048 0.97560 1.00333 0.88792 0.88799 0.89910 0.90974 0.89856 0.87869 0.94466 0.93382 0.89185 0.79765 0.91623 0.93769 0.89604 0.92443 0.90916 0.92343 0.90150 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.93 36.00 0.36 -1.01 16 2 C 0.53 6.31 7.99 -10.98 -0.09 6.22 16 3 O -0.55 -8.81 17.33 5.56 0.10 -8.71 16 4 N -0.62 -6.51 3.32 -171.63 -0.57 -7.08 16 5 C 0.10 0.89 6.14 -3.26 -0.02 0.87 16 6 C -0.10 -1.01 3.72 -88.45 -0.33 -1.34 16 7 H 0.11 1.03 7.90 -51.93 -0.41 0.62 16 8 C 0.05 0.65 5.26 -2.24 -0.01 0.64 16 9 N -0.48 -7.49 5.05 -229.92 -1.16 -8.65 16 10 C 0.03 0.54 5.34 -4.97 -0.03 0.51 16 11 C 0.45 10.23 7.58 -10.99 -0.08 10.15 16 12 O -0.56 -14.61 14.41 5.54 0.08 -14.53 16 13 N -0.59 -14.08 5.09 -10.96 -0.06 -14.14 16 14 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 15 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 16 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 17 N -0.88 -25.67 13.96 55.50 0.77 -24.89 16 18 Si 0.88 19.42 27.74 -169.99 -4.71 14.70 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.27 -5.48 6.52 56.52 0.37 -5.12 16 22 C 0.04 0.50 5.73 -1.20 -0.01 0.49 16 23 C -0.07 -0.73 1.06 -152.36 -0.16 -0.89 16 24 C -0.13 -1.06 8.52 37.16 0.32 -0.75 16 25 C 0.11 1.14 5.94 -3.28 -0.02 1.12 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.56 6.48 -51.93 -0.34 0.22 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.66 6.01 -51.93 -0.31 0.35 16 31 H 0.10 1.77 6.90 -51.93 -0.36 1.41 16 32 H 0.04 0.53 7.21 -51.93 -0.37 0.16 16 33 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 34 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 35 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.04 0.56 7.39 -51.93 -0.38 0.17 16 38 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.92 7.34 -51.93 -0.38 0.54 16 43 H 0.07 0.62 7.88 -51.93 -0.41 0.21 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -34.49 341.83 -7.25 -41.74 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.53 Total: 8.04 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -0.32 Total: 8.36 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -1.01 Total: -54.76 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.18 Total: -23.24 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.49 -7.25 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101100323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.042 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds